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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCGTTTTGAACCTTTGATTTTTATTCTTCTTCTTCTTCTTCCCTGAAATTTATGAACTGTACAAGAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA mRNA sequence ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA Coding sequence (CDS) ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA Protein sequence MGCHNWSNGGEALLFLSAIIINDRWKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEEKRATSFRVPRKTTGAITQ
Homology
BLAST of CmaCh04G004480 vs. ExPASy TrEMBL
Match: A0A0A0KWD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000730 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06 Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 1 MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60 M CHNWSNGGE L FLSAIIINDR + +S L + + RS+RN EPSGEEE Sbjct: 1 MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60
BLAST of CmaCh04G004480 vs. NCBI nr
Match: KGN52752.1 (hypothetical protein Csa_015318 [Cucumis sativus]) HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06 Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 1 MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60 M CHNWSNGGE L FLSAIIINDR + +S L + + RS+RN EPSGEEE Sbjct: 1 MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KWD1 | 1.3e-06 | 55.74 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000730 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN52752.1 | 2.6e-06 | 55.74 | hypothetical protein Csa_015318 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..77 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..66 |
Relationships
The following mRNA feature(s) are a part of this gene:
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