CmaCh04G004480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G004480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 2289975 .. 2290271 (+)
RNA-Seq Expression	CmaCh04G004480
Synteny	CmaCh04G004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCGTTTTGAACCTTTGATTTTTATTCTTCTTCTTCTTCTTCCCTGAAATTTATGAACTGTACAAGAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

mRNA sequence

ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

Coding sequence (CDS)

ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

Protein sequence

MGCHNWSNGGEALLFLSAIIINDRWKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEEKRATSFRVPRKTTGAITQ

Homology

[Close]

BLAST of CmaCh04G004480 vs. ExPASy TrEMBL
Match: A0A0A0KWD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000730 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 1  MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60
          M CHNWSNGGE L FLSAIIINDR +  +S   L    +      + RS+RN EPSGEEE
Sbjct: 1  MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60

[Close]

BLAST of CmaCh04G004480 vs. NCBI nr
Match: KGN52752.1 (hypothetical protein Csa_015318 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 1  MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60
          M CHNWSNGGE L FLSAIIINDR +  +S   L    +      + RS+RN EPSGEEE
Sbjct: 1  MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60

The following BLAST results are available for this feature:

BLAST of CmaCh04G004480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G004480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWD1	1.3e-06	55.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000730 PE=4 SV=1	[more]

BLAST of CmaCh04G004480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52752.1	2.6e-06	55.74	hypothetical protein Csa_015318 [Cucumis sativus]	[more]

BLAST of CmaCh04G004480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G004480.1	CmaCh04G004480.1	mRNA