CmaCh04G003740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G003740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Polyadenylate-binding protein 1-like
Location	Cma_Chr04: 1867429 .. 1875837 (-)
RNA-Seq Expression	CmaCh04G003740
Synteny	CmaCh04G003740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGGATCCGAAACCTAATCTTCAGCAATTGGGAACCAGTAGACAAAATACACATACCAACCAGCGATCGAGAGGCCACCGGAGACGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCACGAGCACGAGCACGAAGTCTATGGCGGCGATATTCCCGACGACGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACGCCAACTCGAAGGTAGCTTCTCGAGTTCTTCTCTGTTTTTTCCGAGCCTTTTTCATGGAGTTTCGTCTTTGATTCTGTGTATTTTCGAACGGTTCAGGACTTGGAGGACATGAAGAGGAGACTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGGTATCTTCCTTTTTTATCTCTGTACTTCAGTAAGTTAGTTCTTGATTTCTTTTATTGATCTTGGCTTGGTTTAAGGCTTAATTTTTACCGGTTTTTAATGGCGGTGGGAGGATTTAAATTGCCTGGATGAGCCTAGTCTTAACATTGATCACATGTTTGCACATTGAAGAGAGTGAATTTAAGTTGCAAACTGTGAATCAAGTTCATGAAGTTCCAAGATCTGTTAGGGCTGAACCTTATTGAAGTGATTTAGTGGGTAAGTAGGAGAGTTTTGTGATAACACAAGGTTGTCGGATCGTATAAATAAAAGGCTTCTTAAATTGGTTGAGAGCCCTAGTGGGAAGTATGGTCTAGATGAGGTTAAATGCCCAACTTACCAAAGAGTTTTATACTAAACTAACCTAAGAGTTTTATAAACGTTGTCACTTTTTATAAACAGTCGAAGTCCCGTTAGTTTTTGATAAACATCTTCAAAGTTCGGTTTCTTGGGAAGAGAAAAGAAAAGGTCGTTAGATCTAGGAAATTTTGAAGTTCGTGAAGTGTTATTTAACATTGTTATGTCCAATGGGTGCATAGCATTCTTCGATTTTTCTTTGTAGTCTCAAGTTTTTTTGTCTTTTATTTTATAAATCAACCAGAAAGTTTTAAGACTCTGTATTTTGATGGTATTTGACAAATTTCTTATAATGTTCGTCTTTCATCCGGGTGGAACCAAAGTTAAGTTGTCTCTCTTTTCTTATTTATGCTATTTGAATCTGGAACTTCTTTTTTTTCACAATTATGTTGCTTTAATTGTCATAGTTGGGCAATAATTTTCACTTTATTAACAAAACAAATTGATTGTTTTAATGTCCTCTTATTTCCTATGCTGTCAAAATGGTACGAACTTTTAGCAAGATGAACGTGTTCTACGTGGCATGTGCATGTCTGCTCATTAGATACTCTATAGGATTGTTATCTGATGAATACTACTTTTCTTGTTATCATTTATCTTCTTTTTGGTGGTTAGAAGTATATTAATCAGTGGAAGTTTTATCTCATACTTGGTTAACAATTTTTTTAGGGTTTGTTGTTTGTTTGTAACTAACTCGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTGAGATTTATCACCCTTCTCATTCACTATGTCATTTTAATATTGAAGTTTTTTCCGTACACATTTATAGTATTATATCTTTAGCATTGGTCTCCTTTTCGTTTCTCTTTAGTCATCTAACAACCATGGATTGGTCTTTACTATTTATATTCGAATTATCTCAAGTACCGGAATAAAAATATTGAAAAACTTTTTATTTTATTTATTTATTTTTAAAAATCTTTTACTTTGAGTGACATTCTTTCATTAAAGAGTAATTTCAGTCAAGAAATGTAAAAGATAAAACAATTATCATTACGGAATACTGCGCCACAAATTATAATATTTTGAACTTAGAAAAAATTAAGTCATATTTTTTTCAGTTTTTCTTTGTGGAAAATTGTTAAGCTGTTGCCACAACTAATAAAACAGAAAGTGCACGTCGAGAAGACCCTTGGAACATAGCTAAATCTAGTACCTGTTCCCAGCCATGCTCTTCCCATTGAAAAAGATTTCTTTATAGCTGTAGCCCCCAATCATGTCTTTGCTGTGTGGATCCATAAGGTCTTAGCGTTTTTGTAAAGTCAATGCCCATGTGACAACTAGTTTATATTATATTCAGGCTAGCTGAGTCGGCAAGTTCTTCATGAAGTTGTAATGAAGGAAGGATCAAATTCTGCAAATGGTTGGTATCAGAGTAGTGTGAGAATAAATGGTCTCGGTCTTGCTCTGCTTTCATACAGATCAAACAACAGCCAGGATTTTTATTAGAACATCTCTTTTGCAATCTATTCCCTCTGTTGACGCTCTCTCGGGAAAGGGACCTAAGAATTGCTATAGCTCCTTCCCTGATTTCCTTGCATTTATTGAGTAATGAAGTTCCAAATAACTTGCTAATTTCTAACTTATCCTGGTTTCTTCTTGTTACTACCCTTCTTGAATTGGTGCTGCTGTCATTCCGAGCTTCTTGCACTTGCTAGTTCTTTTCCCTTTATAATCTCTTATAATCTCGAAAGCCCTAAACAATAATGTTGATTTTCCACTCACGTATCCTGCCAAAAGGAAAGCGAATGCGCCCACTTAGGGCTACACACACTTCCAATCTTCCTTTCTTCTAAACCTCCATTCCTTCATTTTTCATATATGCATACCACGATCACCACCTTATCCCATAGGGCGCTAGACTCTTTTGGAAATCTCAATAACCTCTTATCCATAGTGCCCATATGCTGATGCTTAGCCCAACCTTTTAATGTTGCAATTATTGACCATAAAGACATAAAACCCAATCAGTATAGGGAAAAGAATTCATCGGCACGATCAATCTTAAGAAGTGATCAAAATTTTGGACCTTCGTAGAGTGTAACCTTTCTGATTGTATGTTCAATTTATGTGAAGTTTATATTGAATATATGTCAAATCATTATCAGCTGTTACGAGGAATTATATTTTATCAATATTTCTAATATTTGGCTCTAAAGATATCTTTCCTTTAACTTGCTCCTAATCTTAAAAGTCTTGATGGATGGCGGATTGAAGTGTTATTTCTCCTTGGGCATACTTTTCTTTTTTGTCTCTCTCCCAATTTCACAAGGTTTTTCAATGTCATATTTCAATACAAGATTTATTTTTTTCTGTTGTGGTTTTTACTTCAGGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTGACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTATTTTAAACTTCAGTTTATGTAAGAACATTATGTTAATAATTTATTTCACCCATACGCCCCTAATACCGAATGTATATCGGAGCGGAGAACGACGTTGTCGATTTTTGAACTTCACCAAGCTTGACGCTCATCTTAGATAAATTATATTGAGTTTTACTACTGACCATAGTCGATTTTTGGTACATTTTGCAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGGGGTCGCCGCCCTTTCATGGCAGATGCACCTTTTTATCCTTCGTATGGTTATGGGTAAGTGCTGAAATACTATATTGCTTCTCACAAGATGATACTTTTCTGTGTGGATGGTTCATTTTCAGACACAGAAACATTATGTGCACTCCTAAAGAATTATCAACTTCCTATGTATATTGTTGAAAAAGTGAATAGTCAACTTCCTTCTACTTTCAGCTTTATAATGCAAGTTTCTATCTTCTTATTTTATGCAGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAACGATTGTTCGAGTTCAGCAGTTCATTCGTCGAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTGTACTCTATTCATGTTTTAAAATCCGACTCAAAGAGTTTCTTTTTTATGAACTTGGTACCAGTTTTAGCTTGTGGGGGTTAAAGATTTGTGGTTTGCTTCTTTAGTTTGCTCTGGAAGAGCTAAAAAACCATTAGAGAGTTTTAAAGAAAGAAAATTAAGGAAACTGAAGGACACAGCCTTTTGTATGGTGAATTGGAACTGATCATGACGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCTCCCTTTTTTTCCAATTTGATTATATTTGGATATGTTTTAGTTTATTAAATTGCAGATTTTCAAATAAGTTGGGATTTACTTTAATTTTTAAATCTCTCTTCAATTTTCAATTTTAAAGCTCTCTTCGATAATAGCTCGCTATTGGCTTATTGAAGAGGACGAGATTGGCTTATTGAAGAGGACGAGATATGGTAAGAGATTATGTGAAGGATCCTAAAACCCCAAGCTGATAATCTCTTGGATAATCTCGGTGCTTGAGTACCCTCTAATCGATTGGTCGTACGTTCGAATCCTACAATAAGTACTTGTTGGACCTCCATTTCTCGAGAGGAGGCGGAGCTGTATTTCCCCAACGGCTGACTAGTGGTAGTAGAAAAATAAACTTGAGTGAGCTTCACATGTATTACTAAACACGAACCAAGCACAGATTCAGTAATAAAGCCAATTTTAAACTTATATATACCATTCCCATTTCTACGCTACATTATTAAATTTTCTTTCCAAACTATAAAATCGAACTTTATTGTGACCTAAAATGGAGTTTGAACATAATAATAATAAATTAAAAATAATAATAATAAATAAATAAATATATATATATATACTTGCACCGAAGCATAGTTAGCGGGCATATTTCATTATTTTGAGTTAATTTCTCTCTGGGTTGTGAATGTAGCCATTGCCGCGAAGAACTTTGAAGGAGATCAGACCGCTAGCAAGTTCAACAATCTTTTGGGGTTCGAATTTTGACTTCAAGTCAACGAGCTTCCAATTCGACGAGTCAGATATCCAATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCCCCATCATCGTAAGTGTGTTGCTTGATCGTTCTCGTGTTCTATCGTTTTTTCTCTTTGTTTAATACTGTTTTCATTTTGATTATTGCTTCAATTCGTTTTTTCTACTTTGTTGAGGGATTGATTTATAGGACCGCCTGTCGATTGATGAATTATTTTTTGTTTGGTAAATAACTATCAGGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTCGCCAATCCGACCTACATTCACTGTACGTTCTTCCAAAATTTAGGGTTTCTGTGCGATTGAAAATATCAGTTGCCTGAAACTTCAACTTGGAGTGTGCGATTGTATACTAACTCTGTGGCATAGAGTGCGATTGTATACTAACTCTGTGGCATAGAGGGAAAAGCTATTAGATGTCCCAAAACGATGGGATTAAGAAAATGAAACAATCAAAATATCAAAAAGTAATTAAGAAAAGGAAAAAAAAAAAATCCACTAGATTCGTTTCGTTGTAGTTAAAGAATTACTTCAATCTGTAACCGTGATCGACATGAACAACAGCGAATCTGAAGACAGATTCAGGAAGAAAATGGATCAAAGAAAAAGGTCACTACTAAATATCAGATTTGGCATTAAGAGCCAATGTTCCTTTTAAATTTGCATCTTTATGAGCTAGATTTTTCATCTTTTAGGCCTGATTACTGCTGTAACTTACTGTTATTCCTACAAAACCATCATATAATTTATCTAATGAGCCTACACAACTCAGAGGTTGGTGCTCGTCTTGTTGATCGTTCTGCCTTGTAAGATGTGTTAGCATTGTACAATTCCATAATGTGGTTCGACATATAATCGTTCCATAAATTTTATTCTTTTGATGATATGATTTGGTCTCTTATGACGGAAGTTGTGAGATCTCACATTGGTTGGAGAGAGGAATGACTCGTTTCTTATAAGGGCGTGGCAACCTCTCCCTAGTAGATGCATTTTAAAACCGTAAGGTTGATAGCGATACGTAACGGACCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATGATATGCTAACGAGAATGCTGAGCCCCTAAGGGGTGGATCGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGAAAACCTCCTCCTAGTAGACACGTTTTAGAATTATGAGGCTAATGACGATATGTAATGGGCCAAAGTGGACAATATCTGCTAGCGGTGGGTTTGGGCTATTACAAAAGTACATTTCTGAAGTATGACACAAAATTTTAGGGTAGTATCTTCATGTACTCACTTGGATTTGCATCTTAATGAATAATGCATGCACACTGGCATTGAAATGTTGGAAAAAATGCTTTTTATGCCGTTCTTATAGCTGATCATCTAGTTTTATGCAGATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTGAGTCGGATCTTTCCCTCTCGTGTTAAGCTTTTCGTGAACTGATTATGCTATTGGTATTAACATCAATGTTTTCTAGGTATCCTCATTGCCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGTTAACTTCTGCTATTTTGTTCAACTTTCCTTTTGAGATCTGAATATTATTATTGCAAATGGCATGAACTTGCTGATGAGACAAAATTTAATGACAAATACTTTTTTGCTTCCTGACCTGTTTGATCTTTATGAGCTGATATTTCCAGTTCCTTTTTCTTAGTATTTTAACACAGTTGCATTGTTGGGAATTCCTTAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCTGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCACCGATGCAGTATGGTATTCCCCCTGGATCTGGACTTTCAAAGAACGACATGAAGAACGCAGCAATTGATCGACGAAAGAGAAAACATGTAATCTGTTGCATTTCATTTGTTTATTTATTTGGTTCTTTTTTAAAATCTTATTAGTGCTCTGTGAGATCTCACATCGGTTGGAGAGGAAAACAAAGCATTCCTTATAAGGGTGAGGAAACCTCTCCCTAACAGATGCGTTTTAAAATCCTGAGGCTGACGGTTATACGTAACGGGCCAAAACGGACAATATCTGCTAGTAGTGAGCTTGGGCTGGGCTGTTACAAATGGTATAAGAGCCAGACACCGAACGGTGTGCCAGCTAGGACGCTGGGCTCTCAAGGGGAGTGGATTGTGAGATCCCACGTCGGTTGGAGAGGAGAATAAAACATTCTGTATAAAGGTGTGGAAACCTTTCCCTGACATATACGTTTTAAAACCGTGAGGCTGACGGCAATACGTAAAAAGGGCCAAAGCGGACAATATCTATTAACAGTGGGCTTAGGCGGTTAGATAGTGTGTTAGAATACATGCCTTTTCCTTTGCCCATTCAAAACTCTCTTTTCTTTTGTGTTTTGACAGGAAAGAAGTATGTAGTACGTAGTTTAGCCAAAACTAGGCTGGATGCGGGAGCAGCTCGTGAGGTAATCTGCATTGATGTCAAAACTTAA

mRNA sequence

ACAGGATCCGAAACCTAATCTTCAGCAATTGGGAACCAGTAGACAAAATACACATACCAACCAGCGATCGAGAGGCCACCGGAGACGGAGGCGGAGATGGAGCATAATTTCAACTACGACGAGCACGAGCACGAGCACGAGCACGAAGTCTATGGCGGCGATATTCCCGACGACGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGACTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTGACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGGGGTCGCCGCCCTTTCATGGCAGATGCACCTTTTTATCCTTCGTATGGTTATGGACACAGAAACATTATGTGCACTCCTAAAGAATTATCAACTTCCTATAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAACGATTGTTCGAGTTCAGCAGTTCATTCGTCGAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTTCAACGAGCTTCCAATTCGACGAGTCAGATATCCAATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCCCCATCATCGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTCGCCAATCCGACCTACATTCACTATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTATCCTCATTGCCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCTGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCACCGATGCAGTATGGTATTCCCCCTGGATCTGGACTTTCAAAGAACGACATGAAGAACGCAGCAATTGATCGACGAAAGAGAAAACATTATGTAGTACGTAGTTTAGCCAAAACTAGGCTGGATGCGGGAGCAGCTCGTGAGGTAATCTGCATTGATGTCAAAACTTAA

Coding sequence (CDS)

ATGGAGCATAATTTCAACTACGACGAGCACGAGCACGAGCACGAGCACGAAGTCTATGGCGGCGATATTCCCGACGACGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGACTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTGACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGGGGTCGCCGCCCTTTCATGGCAGATGCACCTTTTTATCCTTCGTATGGTTATGGACACAGAAACATTATGTGCACTCCTAAAGAATTATCAACTTCCTATAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAGGAGGGTGTATAATGCTCGTACTACTACCGCAAACGATTGTTCGAGTTCAGCAGTTCATTCGTCGAGGGCTCAATTTCCATCTCTATAACTTGGAGGGTGTGGATTTCAACGAGCTTCCAATTCGACGAGTCAGATATCCAATGGCTTCTAATTATGGATTAAACGAAGAAGCAGCTGATTCCCCATCATCGCCTACGAATGTGTACAAGGATCCAGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTCGCCAATCCGACCTACATTCACTATCTGGCTCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAGCCGGAGTATATTAAGTATATAATGTATCCTCATTGCCTCTTTTTTCTTGAACTTCTACAAAATGCGAACTTCCGAAGTGCAATGGCTCATCCTGCCAACAAGGAATTGGCACACAGGCAGCAATTTTACTTCTGGAAGAACTATAGGAACAATCGTTTGAAACATATTTTACCGCGATCATTTCCTGAACCTGCTGCGCTACCACCCCCAGTTTCTGCTCCATCTCAGGCACCTGTGCCTACCACAGCCCCTGCCATGGCAGCTTCTCCTGCTGCTACACCTGCCCTTTCACCGATGCAGTATGGTATTCCCCCTGGATCTGGACTTTCAAAGAACGACATGAAGAACGCAGCAATTGATCGACGAAAGAGAAAACATTATGTAGTACGTAGTTTAGCCAAAACTAGGCTGGATGCGGGAGCAGCTCGTGAGGTAATCTGCATTGATGTCAAAACTTAA

Protein sequence

MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQAADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKNDMKNAAIDRRKRKHYVVRSLAKTRLDAGAAREVICIDVKT

Homology

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BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-73
Identity = 144/202 (71.29%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 300 MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 359
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 360 AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 419
           AFIGYLKYLQYWQ+PEYIK+IMYPHCL+FLELLQN NFR+AMAHPANKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 420 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPG 479
           NYRNNRLKHILPR  PEP    PPV     AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPV-----APSTSLPPAPSATAALSPALSPMQY----N 180

Query: 480 SGLSKNDMKN---AAIDRRKRK 499
           + LSKND +N     IDRRKRK
Sbjct: 181 NMLSKNDTRNMGATGIDRRKRK 193

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BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.1e-72
Identity = 150/214 (70.09%), Postives = 171/214 (79.91%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNANSKDLEDMKRRLKEIE 72
           E EHEVYGG+IP++ E + D +       EEG    D+     ++S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 73  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHF 132
           EEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVD+RS+YVGNVDYACTPEEVQQHF
Sbjct: 66  EEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQQHF 125

Query: 133 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 192
           QSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPG
Sbjct: 126 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 185

Query: 193 MKQYRGR-RPNPYGFRGRRPFMADAPFYPSYGYG 223
           M+Q+RGR RP    FR  R FM   PFYP Y YG
Sbjct: 186 MRQFRGRGRP----FRPMRGFMPGVPFYPPYAYG 213

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BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-69
Identity = 148/211 (70.14%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEEEA 72
           E EHEVYGG+IPD  EMD D++  +   D    DD        K+L++MK+RLKE+E+EA
Sbjct: 3   EEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDA-----VKELDEMKKRLKEMEDEA 62

Query: 73  GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSC 132
            ALREMQAKVEKEMGA  +D +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 63  AALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 122

Query: 133 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 192
           GTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 123 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 182

Query: 193 YRGRRPNPY-GFRGRRPFMADAPFYPSYGYG 223
           +RGRR NPY G+R RRPFM+   + P YGYG
Sbjct: 183 FRGRRFNPYMGYRFRRPFMSPYMYSP-YGYG 205

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BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-65
Identity = 148/214 (69.16%), Postives = 163/214 (76.17%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIE 72
           E EHEVYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+E
Sbjct: 3   EEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEME 62

Query: 73  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHF 132
           EEA ALREMQAKVEKEMGA Q D +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HF
Sbjct: 63  EEAAALREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHF 122

Query: 133 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 192
           Q+CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPG
Sbjct: 123 QTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPG 182

Query: 193 MKQYRGRRPNP-YGFRGRRPFMADAPFYPSYGYG 223
           MKQY   R NP  G+R RRPF+    FY  YGYG
Sbjct: 183 MKQYHPGRFNPSMGYRFRRPFVPPY-FYSPYGYG 202

[Close]

BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-36
Identity = 91/174 (52.30%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 47  DAEPTNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEV 106
           D +  +   K+L +MK R+ E+E EA  LR MQ +++ E          T A + +KE +
Sbjct: 3   DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE----------TEALRNDKESI 62

Query: 107 DARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNA 166
           DA+SVYVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NA
Sbjct: 63  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 122

Query: 167 LLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSY 220
           LLLN S LH R LKV+ KRTNVPGM + RGR       RGR  +   A  +  Y
Sbjct: 123 LLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL
Match: A0A4U5MIM5 (Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_0000306630 PE=3 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 4.2e-162
Identity = 323/504 (64.09%), Postives = 357/504 (70.83%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60
           M+H  +++E EHEHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y D      NSKDLED
Sbjct: 1   MDHLHDHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEYQD-----PNSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120
           MK+RLKEIEEEAGALREMQAKVEKEMGAVQ DS   SATQAEKEEVD+RS+YVGNVDY+C
Sbjct: 61  MKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVDYSC 120

Query: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180
           TPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKV 180

Query: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGS 240
           SAKRTNVPGMKQ+RGRRP+PYGFR RRPFMA APFYP+YGYG                  
Sbjct: 181 SAKRTNVPGMKQFRGRRPSPYGFRSRRPFMA-APFYPAYGYG------------------ 240

Query: 241 EVQAADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPM 300
                                                                   R P 
Sbjct: 241 --------------------------------------------------------RVP- 300

Query: 301 ASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEA 360
                           P  +YKDPDDGRQRFL+ELEFVQCLANPTYIHYLAQNRY EDEA
Sbjct: 301 ---------------RPKKIYKDPDDGRQRFLMELEFVQCLANPTYIHYLAQNRYFEDEA 360

Query: 361 FIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKN 420
           FIGYLKYLQYWQ+PEY+K+IMYPHCL+FLELLQNANFR+AMAHP NKELAHRQQF+FWKN
Sbjct: 361 FIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFRNAMAHPGNKELAHRQQFFFWKN 404

Query: 421 YRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPA---MAASPAATPALSPMQYGIP 480
           YRNNRLKHILPR  PEP   PP  + P   P P  + A   M+A+P A P  SPM YG+P
Sbjct: 421 YRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAATLGMSAAPGAVP--SPMPYGMP 404

Query: 481 PGSGLSKNDMKNAAIDRRKRKHYV 502
           PGS   K D++++  DRRKRK  V
Sbjct: 481 PGSAFGKIDIRSSGSDRRKRKKEV 404

[Close]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL
Match: A0A498JLW5 (RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 1.4e-157
Identity = 318/498 (63.86%), Postives = 363/498 (72.89%), Query Frame = 0


Query: 11  EHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEE 70
           E +HEHEVYG +IP+D   D D+   +  AD+E Y+D    + NSK+LEDMK+RLKEIEE
Sbjct: 2   EEQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYND----DPNSKELEDMKKRLKEIEE 61

Query: 71  EAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EAGALR+MQAKVEKEMGAVQ D+SS SA+QAEKEEVD+RS+YVGNVDYACTPEEVQQHFQ
Sbjct: 62  EAGALRDMQAKVEKEMGAVQ-DTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQ 121

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           SCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHGRQLKVSAKRTNVPG+
Sbjct: 122 SCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGL 181

Query: 191 KQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQAADAVQT 250
           KQYRGRRPNP+ FR RRPF+  APFYPS+GYG       P  L +               
Sbjct: 182 KQYRGRRPNPF-FRSRRPFIPAAPFYPSFGYGRVPRFRRPMSLRSE-------------- 241

Query: 251 ILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASNYGL---N 310
                 + +LLP  +    + +     +  +++   D  E       +       L   +
Sbjct: 242 ------IFLLLPLPLEIEDEELLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVAD 301

Query: 311 EEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKY 370
              A      +++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKY
Sbjct: 302 PIPAHCHRRTSSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKY 361

Query: 371 LQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLK 430
           LQYWQ+PEY ++IMYPHCLFFLE LQNANFR+AMAHP NKELAHRQQFYFWKNYRNNRLK
Sbjct: 362 LQYWQRPEYTRFIMYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLK 421

Query: 431 HILPRSFPEPA-ALPPPVSAPSQAPVPTTAPAMAASPAAT---PALSPMQYGIPPGSGLS 490
           HILPR  PEP  ALPPP  AP Q  VP   P  A + + T   PA SPMQY +PPGS   
Sbjct: 422 HILPRPLPEPVPALPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGSA-P 470

Query: 491 KNDMKNAAIDRRKRKHYV 502
           K + +N  +DRRKRKH V
Sbjct: 482 KVEPRNTGVDRRKRKHLV 470

[Close]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL
Match: A0A803P1V0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 7.2e-146
Identity = 295/455 (64.84%), Postives = 318/455 (69.89%), Query Frame = 0


Query: 56  KDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGN 115
           ++LEDMK+RLKE+EEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVD+RS+YVGN
Sbjct: 10  EELEDMKKRLKEMEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSIYVGN 69

Query: 116 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHG 175
           VDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHG
Sbjct: 70  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHG 129

Query: 176 RQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELST 235
           RQLKVSAKRTNVPGMKQ+RGRR  P  FR RRPF   +PFYPSYGYG             
Sbjct: 130 RQLKVSAKRTNVPGMKQFRGRRAGP--FRSRRPFAPASPFYPSYGYG------------- 189

Query: 236 SYKGSEVQAADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRR 295
                                          RV +F R                      
Sbjct: 190 -------------------------------RVPRFRR---------------------- 249

Query: 296 VRYPMASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY 355
                             P    ++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY
Sbjct: 250 ------------------PMRQKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY 309

Query: 356 LEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQF 415
            EDEAFIGYLKYLQYWQQPEY+K+IMYPHCL+FLELLQNANFR+AMAHP +KELAHRQQF
Sbjct: 310 FEDEAFIGYLKYLQYWQQPEYMKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQF 369

Query: 416 YFWKNYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYG 475
           YFWKNYRNNRLKHILPRS PEP A  P     S  PV  +   MAA+P   P LSPMQY 
Sbjct: 370 YFWKNYRNNRLKHILPRSLPEPPAPTPVPPQQSMPPVAASTIGMAAAPG--PVLSPMQYA 375

Query: 476 IPPGSGLSKNDMKNAAIDRRKRKHYVVRSLAKTRL 511
            P GS L K DM+N   DRRKRK ++  +L   RL
Sbjct: 430 NPQGSSLPKTDMRNTGADRRKRKRFLHVALNAKRL 375

[Close]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL
Match: A0A6N2MJL7 (RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 4.0e-136
Identity = 289/504 (57.34%), Postives = 331/504 (65.67%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60
           ME+  +++E EHEHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y D      NSKDLED
Sbjct: 1   MENLHDHEEDEHEHEHEVYGGEIPDEGEMDADIDMSS-RAEEDEYQD-----PNSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGN--VDY 120
           MK+RLKEIEEEA ALREMQAKVEKEMGAVQ DS   SATQAEKEEVD+RS+YVGN  VDY
Sbjct: 61  MKKRLKEIEEEASALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVRVDY 120

Query: 121 ACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQL 180
           +CTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE DA+QNALLLNESELHGRQL
Sbjct: 121 SCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAIQNALLLNESELHGRQL 180

Query: 181 KVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYK 240
           KVSAKRTNVPGMK +RGRRP+ YGFR RRPFM     YP+YGYG              + 
Sbjct: 181 KVSAKRTNVPGMKLFRGRRPSAYGFRSRRPFMP----YPAYGYG--------------FN 240

Query: 241 GSEVQAADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRY 300
            + +  A+  Q     C                                           
Sbjct: 241 LNIISCAEGFQGSGDLC------------------------------------------- 300

Query: 301 PMASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLED 360
                     +   +     N       G+    L+L             YLAQNRY +D
Sbjct: 301 ----------DTGHTSEQKRNTRNCSTSGKLELSLQLR-----------KYLAQNRYFDD 360

Query: 361 EAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFW 420
           EAFIGYLKYLQYWQ+PEY+K+IMYPHCL+FLELLQN NFR+AMAHP NKELAHRQQF+FW
Sbjct: 361 EAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNVNFRNAMAHPGNKELAHRQQFFFW 415

Query: 421 KNYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPAL-SPMQYGIP 480
           KNYRNNRLKHILPR  PEP   PP  + P Q P    + A    PAA+ A+ SPM YG+P
Sbjct: 421 KNYRNNRLKHILPRPLPEPVTAPPAPAPPPQPPAQPVSAATLGMPAASGAVPSPMPYGMP 415

Query: 481 PGSGLSKNDMKNAAIDRRKRKHYV 502
           PGS   K+D++++  DRRKRK  V
Sbjct: 481 PGSAFGKSDIRSSGSDRRKRKKEV 415

[Close]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL
Match: A0A6J1JNI9 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486896 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 2.2e-118
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60
           MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED
Sbjct: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120
           MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC
Sbjct: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120

Query: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180
           TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180

Query: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYG 223
           SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYG
Sbjct: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYG 222

[Close]

BLAST of CmaCh04G003740 vs. NCBI nr
Match: TKR68723.1 (polyadenylate-binding protein 1-like [Populus alba])

HSP 1 Score: 581.3 bits (1497), Expect = 8.7e-162
Identity = 323/504 (64.09%), Postives = 357/504 (70.83%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60
           M+H  +++E EHEHEHEVYGG+IPD+ EMDAD+DMSS RA+E+ Y D      NSKDLED
Sbjct: 1   MDHLHDHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEYQD-----PNSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120
           MK+RLKEIEEEAGALREMQAKVEKEMGAVQ DS   SATQAEKEEVD+RS+YVGNVDY+C
Sbjct: 61  MKKRLKEIEEEAGALREMQAKVEKEMGAVQ-DSPGASATQAEKEEVDSRSIYVGNVDYSC 120

Query: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180
           TPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKV 180

Query: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGS 240
           SAKRTNVPGMKQ+RGRRP+PYGFR RRPFMA APFYP+YGYG                  
Sbjct: 181 SAKRTNVPGMKQFRGRRPSPYGFRSRRPFMA-APFYPAYGYG------------------ 240

Query: 241 EVQAADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPM 300
                                                                   R P 
Sbjct: 241 --------------------------------------------------------RVP- 300

Query: 301 ASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEA 360
                           P  +YKDPDDGRQRFL+ELEFVQCLANPTYIHYLAQNRY EDEA
Sbjct: 301 ---------------RPKKIYKDPDDGRQRFLMELEFVQCLANPTYIHYLAQNRYFEDEA 360

Query: 361 FIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKN 420
           FIGYLKYLQYWQ+PEY+K+IMYPHCL+FLELLQNANFR+AMAHP NKELAHRQQF+FWKN
Sbjct: 361 FIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFRNAMAHPGNKELAHRQQFFFWKN 404

Query: 421 YRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPA---MAASPAATPALSPMQYGIP 480
           YRNNRLKHILPR  PEP   PP  + P   P P  + A   M+A+P A P  SPM YG+P
Sbjct: 421 YRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAATLGMSAAPGAVP--SPMPYGMP 404

Query: 481 PGSGLSKNDMKNAAIDRRKRKHYV 502
           PGS   K D++++  DRRKRK  V
Sbjct: 481 PGSAFGKIDIRSSGSDRRKRKKEV 404

[Close]

BLAST of CmaCh04G003740 vs. NCBI nr
Match: XP_025014092.1 (polyadenylate-binding protein 2 isoform X1 [Ricinus communis])

HSP 1 Score: 577.4 bits (1487), Expect = 1.3e-160
Identity = 328/502 (65.34%), Postives = 353/502 (70.32%), Query Frame = 0


Query: 8   DEHEH-EHEHEVYGGDIPDDAEMDADLDMSS--GRADEEGYDDAEPTNANSKDLEDMKRR 67
           D+HEH E EHEVYG +IPD+ EMDAD+DMSS     +EE  ++ +  N NSKDLEDMK+R
Sbjct: 2   DQHEHEEQEHEVYGSEIPDEGEMDADIDMSSRPEEEEEEVEEEYDEQNPNSKDLEDMKKR 61

Query: 68  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEE 127
           LKEIEEEAGALREMQAKVEKEMGAVQ DSSS SATQAEKEEVD+RSVYVGNVDYACTPEE
Sbjct: 62  LKEIEEEAGALREMQAKVEKEMGAVQ-DSSSGSATQAEKEEVDSRSVYVGNVDYACTPEE 121

Query: 128 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 187
           VQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR
Sbjct: 122 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 181

Query: 188 TNVPGMKQYRGRRPNPY-GFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQ 247
           TN+PGMKQYRGRRPNPY GFR RRPFM  APF P YGYG                     
Sbjct: 182 TNIPGMKQYRGRRPNPYSGFRSRRPFM-PAPFSPPYGYG--------------------- 241

Query: 248 AADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASN 307
                                                                       
Sbjct: 242 ------------------------------------------------------------ 301

Query: 308 YGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIG 367
                        P ++YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIG
Sbjct: 302 -------------PKSIYKDPDDGKQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIG 361

Query: 368 YLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRN 427
           YLKYLQYWQQPEYIK+IMYPHCLFFLELLQNA+FR+AMAHP NKEL HRQQF+FWKNYRN
Sbjct: 362 YLKYLQYWQQPEYIKFIMYPHCLFFLELLQNASFRNAMAHPGNKELTHRQQFFFWKNYRN 405

Query: 428 NRLKHILPRSFPEPAALPPPVSAP----SQAPVPTTAPAMAASPAATPALSPMQYGIPPG 487
           NRLKHILPR  PEP   PP  + P      +PVP T  AM A+ A+  ALSPM YG+PPG
Sbjct: 422 NRLKHILPRPLPEPVPTPPTSALPLPPLQSSPVPPTTVAMPAASAS--ALSPMPYGMPPG 405

Query: 488 SGLSKNDMKNAAIDRRKRKHYV 502
           S L+KNDM+N  IDRRKRK  V
Sbjct: 482 STLAKNDMRNTGIDRRKRKKEV 405

[Close]

BLAST of CmaCh04G003740 vs. NCBI nr
Match: XP_025014094.1 (polyadenylate-binding protein 2 isoform X2 [Ricinus communis])

HSP 1 Score: 571.6 bits (1472), Expect = 6.9e-159
Identity = 326/502 (64.94%), Postives = 351/502 (69.92%), Query Frame = 0


Query: 8   DEHEH-EHEHEVYGGDIPDDAEMDADLDMSS--GRADEEGYDDAEPTNANSKDLEDMKRR 67
           D+HEH E EHEVYG +IPD+ EMDAD+DMSS     +EE  ++ +  N NSKDLEDMK+R
Sbjct: 2   DQHEHEEQEHEVYGSEIPDEGEMDADIDMSSRPEEEEEEVEEEYDEQNPNSKDLEDMKKR 61

Query: 68  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEE 127
           LKEIEEEAGALREMQAKVEKEMGAVQ DSSS SATQAEKEEVD+RSVYVGNVDYACTPEE
Sbjct: 62  LKEIEEEAGALREMQAKVEKEMGAVQ-DSSSGSATQAEKEEVDSRSVYVGNVDYACTPEE 121

Query: 128 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 187
           VQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR
Sbjct: 122 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 181

Query: 188 TNVPGMKQYRGRRPNPY-GFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQ 247
           TN+PGMKQYRGRRPNPY GFR RRPFM  APF P YG                       
Sbjct: 182 TNIPGMKQYRGRRPNPYSGFRSRRPFM-PAPFSPPYG----------------------- 241

Query: 248 AADAVQTILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASN 307
                                                                       
Sbjct: 242 ------------------------------------------------------------ 301

Query: 308 YGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIG 367
                        P ++YKDPDDG+QRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIG
Sbjct: 302 -------------PKSIYKDPDDGKQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIG 361

Query: 368 YLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRN 427
           YLKYLQYWQQPEYIK+IMYPHCLFFLELLQNA+FR+AMAHP NKEL HRQQF+FWKNYRN
Sbjct: 362 YLKYLQYWQQPEYIKFIMYPHCLFFLELLQNASFRNAMAHPGNKELTHRQQFFFWKNYRN 403

Query: 428 NRLKHILPRSFPEPAALPPPVSAP----SQAPVPTTAPAMAASPAATPALSPMQYGIPPG 487
           NRLKHILPR  PEP   PP  + P      +PVP T  AM A+ A+  ALSPM YG+PPG
Sbjct: 422 NRLKHILPRPLPEPVPTPPTSALPLPPLQSSPVPPTTVAMPAASAS--ALSPMPYGMPPG 403

Query: 488 SGLSKNDMKNAAIDRRKRKHYV 502
           S L+KNDM+N  IDRRKRK  V
Sbjct: 482 STLAKNDMRNTGIDRRKRKKEV 403

[Close]

BLAST of CmaCh04G003740 vs. NCBI nr
Match: RXH94803.1 (hypothetical protein DVH24_024487 [Malus domestica])

HSP 1 Score: 566.2 bits (1458), Expect = 2.9e-157
Identity = 318/498 (63.86%), Postives = 363/498 (72.89%), Query Frame = 0


Query: 11  EHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEE 70
           E +HEHEVYG +IP+D   D D+   +  AD+E Y+D    + NSK+LEDMK+RLKEIEE
Sbjct: 2   EEQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYND----DPNSKELEDMKKRLKEIEE 61

Query: 71  EAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EAGALR+MQAKVEKEMGAVQ D+SS SA+QAEKEEVD+RS+YVGNVDYACTPEEVQQHFQ
Sbjct: 62  EAGALRDMQAKVEKEMGAVQ-DTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQ 121

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           SCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQNALLLNESELHGRQLKVSAKRTNVPG+
Sbjct: 122 SCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGL 181

Query: 191 KQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQAADAVQT 250
           KQYRGRRPNP+ FR RRPF+  APFYPS+GYG       P  L +               
Sbjct: 182 KQYRGRRPNPF-FRSRRPFIPAAPFYPSFGYGRVPRFRRPMSLRSE-------------- 241

Query: 251 ILGGCIMLVLLPQTIVRVQQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASNYGL---N 310
                 + +LLP  +    + +     +  +++   D  E       +       L   +
Sbjct: 242 ------IFLLLPLPLEIEDEELLGLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVAD 301

Query: 311 EEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKY 370
              A      +++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKY
Sbjct: 302 PIPAHCHRRTSSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKY 361

Query: 371 LQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLK 430
           LQYWQ+PEY ++IMYPHCLFFLE LQNANFR+AMAHP NKELAHRQQFYFWKNYRNNRLK
Sbjct: 362 LQYWQRPEYTRFIMYPHCLFFLEQLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLK 421

Query: 431 HILPRSFPEPA-ALPPPVSAPSQAPVPTTAPAMAASPAAT---PALSPMQYGIPPGSGLS 490
           HILPR  PEP  ALPPP  AP Q  VP   P  A + + T   PA SPMQY +PPGS   
Sbjct: 422 HILPRPLPEPVPALPPP--APPQQVVPPVPPVPATTVSVTATAPAPSPMQYSMPPGSA-P 470

Query: 491 KNDMKNAAIDRRKRKHYV 502
           K + +N  +DRRKRKH V
Sbjct: 482 KVEPRNTGVDRRKRKHLV 470

[Close]

BLAST of CmaCh04G003740 vs. NCBI nr
Match: KAF9668146.1 (hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii])

HSP 1 Score: 492.7 bits (1267), Expect = 4.1e-135
Identity = 287/471 (60.93%), Postives = 321/471 (68.15%), Query Frame = 0


Query: 29  MDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGA 88
           MDAD+DMSS RA+E+ Y   EP +         KRRLKEIEEEAGALREMQAKVEKEMGA
Sbjct: 1   MDADVDMSS-RAEEDEYQ--EPNS---------KRRLKEIEEEAGALREMQAKVEKEMGA 60

Query: 89  VQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHP 148
           + +           K        ++  VDY+CTPEEVQQHFQSCGTVNRVTILTDKFG P
Sbjct: 61  ILQVLQRLKL----KRRRWMHDPFM-LVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQP 120

Query: 149 KGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRP 208
           KGFAYVEF+EVDAVQNAL+LNESELHGRQLKVSAKRTNVPGMKQ+RGRR +PYGFR +R 
Sbjct: 121 KGFAYVEFIEVDAVQNALILNESELHGRQLKVSAKRTNVPGMKQFRGRRASPYGFRSQRA 180

Query: 209 FMADAPFYPSYGYGHRNIMCTPKELSTSYKGSEVQAADAVQTILGGCIMLVLLPQTIVRV 268
           FM  APFY  YGY                 GS+VQ   AVQ ILG               
Sbjct: 181 FM-PAPFYSPYGY-----------------GSKVQETYAVQAILGN-------------- 240

Query: 269 QQFIRRGLNFHLYNLEGVDFNELPIRRVRYPMASNYGLNEEAADSPSSPTNVYKDPDDGR 328
                    + +       F E                 E   ++PSSP  +YKDPDDGR
Sbjct: 241 --------TYSVAKTSMASFEEA----------------ENNPETPSSPKKIYKDPDDGR 300

Query: 329 QRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFF 388
           QRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYL YWQ+PEY+K+IMYPHCL+F
Sbjct: 301 QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLLYWQRPEYMKFIMYPHCLYF 360

Query: 389 LELLQNANFRSAMAHPANKELAHRQQFYFWKNYRNNRLKHILPRSFPEPAALPP-PVSAP 448
           LELLQNANFR+AMAHPANKELAHRQQF+FWKNYRNNRLKHILPR  PEPAA PP P   P
Sbjct: 361 LELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHILPRPLPEPAAAPPAPAPVP 393

Query: 449 SQAPVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKNDMKNAAIDRRKRK 499
              PVP     M A+  A P  SPM YG+PPGS   K+D++++  +RRKRK
Sbjct: 421 ---PVPAATLGMLATSGAVP--SPMPYGMPPGSAFGKSDIRSSGSERRKRK 393

[Close]

BLAST of CmaCh04G003740 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 278.1 bits (710), Expect = 1.5e-74
Identity = 144/202 (71.29%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 300 MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 359
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 360 AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 419
           AFIGYLKYLQYWQ+PEYIK+IMYPHCL+FLELLQN NFR+AMAHPANKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 420 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPAMAASPAATPALSPMQYGIPPG 479
           NYRNNRLKHILPR  PEP    PPV     AP  +  PA +A+ A +PALSPMQY     
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPV-----APSTSLPPAPSATAALSPALSPMQY----N 180

Query: 480 SGLSKNDMKN---AAIDRRKRK 499
           + LSKND +N     IDRRKRK
Sbjct: 181 NMLSKNDTRNMGATGIDRRKRK 193

[Close]

BLAST of CmaCh04G003740 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 273.5 bits (698), Expect = 3.6e-73
Identity = 150/214 (70.09%), Postives = 171/214 (79.91%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNANSKDLEDMKRRLKEIE 72
           E EHEVYGG+IP++ E + D +       EEG    D+     ++S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 73  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHF 132
           EEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVD+RS+YVGNVDYACTPEEVQQHF
Sbjct: 66  EEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQQHF 125

Query: 133 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 192
           QSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPG
Sbjct: 126 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 185

Query: 193 MKQYRGR-RPNPYGFRGRRPFMADAPFYPSYGYG 223
           M+Q+RGR RP    FR  R FM   PFYP Y YG
Sbjct: 186 MRQFRGRGRP----FRPMRGFMPGVPFYPPYAYG 213

[Close]

BLAST of CmaCh04G003740 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 264.6 bits (675), Expect = 1.7e-70
Identity = 148/211 (70.14%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRRLKEIEEEA 72
           E EHEVYGG+IPD  EMD D++  +   D    DD        K+L++MK+RLKE+E+EA
Sbjct: 3   EEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDA-----VKELDEMKKRLKEMEDEA 62

Query: 73  GALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSC 132
            ALREMQAKVEKEMGA  +D +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 63  AALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 122

Query: 133 GTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQ 192
           GTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 123 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 182

Query: 193 YRGRRPNPY-GFRGRRPFMADAPFYPSYGYG 223
           +RGRR NPY G+R RRPFM+   + P YGYG
Sbjct: 183 FRGRRFNPYMGYRFRRPFMSPYMYSP-YGYG 205

[Close]

BLAST of CmaCh04G003740 vs. TAIR 10
Match: AT5G19910.2 (SOH1 family protein )

HSP 1 Score: 262.3 bits (669), Expect = 8.3e-70
Identity = 144/232 (62.07%), Postives = 161/232 (69.40%), Query Frame = 0


Query: 300 MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 359
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 360 AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANK------------ 419
           AFIGYLKYLQYWQ+PEYIK+IMYPHCL+FLELLQN NFR+AMAHPANK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 420 ------------------ELAHRQQFYFWKNYRNNRLKHILPRSFPEPAALPPPVSAPSQ 479
                             ELAHRQQFY+WKNYRNNRLKHILPR  PEP    PPV     
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPV----- 180

Query: 480 APVPTTAPAMAASPAATPALSPMQYGIPPGSGLSKNDMKN---AAIDRRKRK 499
           AP  +  PA +A+ A +PALSPMQY     + LSKND +N     IDRRKRK
Sbjct: 181 APSTSLPPAPSATAALSPALSPMQY----NNMLSKNDTRNMGATGIDRRKRK 223

[Close]

BLAST of CmaCh04G003740 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 255.8 bits (652), Expect = 7.8e-68
Identity = 147/250 (58.80%), Postives = 172/250 (68.80%), Query Frame = 0


Query: 13  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNANSKDLEDMKRRLKEIE 72
           E EHEVYGG+IP++ E + D +       EEG    D+     ++S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 73  EEAGALREMQAKVEKEMGAVQ------------------------------------EDS 132
           EEAGALREMQAK EK+MGA Q                                    ++ 
Sbjct: 66  EEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKEI 125

Query: 133 SSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAY 192
            ++  + AEKEEVD+RS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAY
Sbjct: 126 INSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAY 185

Query: 193 VEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPNPYGFRGRRPFMAD 223
           VEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR  R FM  
Sbjct: 186 VEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGFMPG 245

The following BLAST results are available for this feature:

BLAST of CmaCh04G003740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYB1	2.1e-73	71.29	Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O...	[more]
Q93VI4	5.1e-72	70.09	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q9FJN9	2.4e-69	70.14	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	2.1e-65	69.16	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	2.0e-36	52.30	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of CmaCh04G003740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5MIM5	4.2e-162	64.09	Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_000030663...	[more]
A0A498JLW5	1.4e-157	63.86	RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV...	[more]
A0A803P1V0	7.2e-146	64.84	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6N2MJL7	4.0e-136	57.34	RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE...	[more]
A0A6J1JNI9	2.2e-118	100.00	polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh04G003740 vs. NCBI nr


Match Name	E-value	Identity	Description
TKR68723.1	8.7e-162	64.09	polyadenylate-binding protein 1-like [Populus alba]	[more]
XP_025014092.1	1.3e-160	65.34	polyadenylate-binding protein 2 isoform X1 [Ricinus communis]	[more]
XP_025014094.1	6.9e-159	64.94	polyadenylate-binding protein 2 isoform X2 [Ricinus communis]	[more]
RXH94803.1	2.9e-157	63.86	hypothetical protein DVH24_024487 [Malus domestica]	[more]
KAF9668146.1	4.1e-135	60.93	hypothetical protein SADUNF_Sadunf15G0098100 [Salix dunnii]	[more]

BLAST of CmaCh04G003740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19910.1	1.5e-74	71.29	SOH1 family protein	[more]
AT5G51120.1	3.6e-73	70.09	polyadenylate-binding protein 1	[more]
AT5G65260.1	1.7e-70	70.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G19910.2	8.3e-70	62.07	SOH1 family protein	[more]
AT5G51120.2	7.8e-68	58.80	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 10..225
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 10..225
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 110..181 e-value: 8.84104E-47 score: 155.527
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 110..181 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 111..179 e-value: 1.3E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 109..185 score: 16.773018
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..182 e-value: 3.0E-27 score: 97.3
IPR008831	Mediator complex, subunit Med31	PFAM	PF05669	Med31	coord: 329..421 e-value: 4.5E-34 score: 116.4
IPR038089	Mediator of RNA polymerase II, subunit Med31 superfamily	GENE3D	1.10.10.1340	Mediator of RNA polymerase II, submodule Med31 (Soh1)	coord: 316..418 e-value: 1.1E-39 score: 136.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 98..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003740.1	CmaCh04G003740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0003676	nucleic acid binding