CmaCh03G012260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G012260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 8122698 .. 8123160 (-)
RNA-Seq ExpressionCmaCh03G012260
SyntenyCmaCh03G012260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCTTAGTCCTCATCTTATCAATGATGATCTTGAGCTACACTTGCTCAGTGACTTCAAGAAGGATTGCTTTGGCAGGGTTTCATGAACAAGGAAACCAACATTTCTTAAAGCAATCAAAAACGGCTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCATTAGCAACCATCACTCTTTGCCTAGAGAGTACTTCAACGAGAAGGGTGGAGCTTCGCAAGGAAATGACAATGGAAGTGGGTAACTATTGCAAATCTAGAAGGCTAATATGTACTATTTGATATAGCATATCAGAAGATCCTAGTTCTTTTTGCTCTAGCTGTTGATGTTCCTATGTTCCAAGGAGTAGGCAGAGTATGAGGGTAGAGGGAGGTGCGCTTTCCTCCAGTAATCATATACCTTCTGCTAGAAAATCCGAAGGACTAATAATGGTCATCCCTTAG

mRNA sequence

ATGAAGTTCTTAGTCCTCATCTTATCAATGATGATCTTGAGCTACACTTGCTCAGTGACTTCAAGAAGGATTGCTTTGGCAGGGTTTCATGAACAAGGAAACCAACATTTCTTAAAGCAATCAAAAACGGCTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCATTAGCAACCATCACTCTTTGCCTAGAGAGTACTTCAACGAGAAGGGTGGAGCTTCGCAAGGAAATGACAATGGAAGTGGGCAGAGTATGAGGGTAGAGGGAGGTGCGCTTTCCTCCAGTAATCATATACCTTCTGCTAGAAAATCCGAAGGACTAATAATGGTCATCCCTTAG

Coding sequence (CDS)

ATGAAGTTCTTAGTCCTCATCTTATCAATGATGATCTTGAGCTACACTTGCTCAGTGACTTCAAGAAGGATTGCTTTGGCAGGGTTTCATGAACAAGGAAACCAACATTTCTTAAAGCAATCAAAAACGGCTGAAGAAAATAACAGCAGAAAGAGCAATTTCAAGCACCCAGAAAGTGGCATTAGCAACCATCACTCTTTGCCTAGAGAGTACTTCAACGAGAAGGGTGGAGCTTCGCAAGGAAATGACAATGGAAGTGGGCAGAGTATGAGGGTAGAGGGAGGTGCGCTTTCCTCCAGTAATCATATACCTTCTGCTAGAAAATCCGAAGGACTAATAATGGTCATCCCTTAG

Protein sequence

MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESGISNHHSLPREYFNEKGGASQGNDNGSGQSMRVEGGALSSSNHIPSARKSEGLIMVIP
Homology
BLAST of CmaCh03G012260 vs. ExPASy TrEMBL
Match: A0A0A0KK82 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446330 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 69/87 (79.31%), Postives = 74/87 (85.06%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
          MKFLVLILSMMILSYTCS TSRRIAL G H QGNQ+F KQ++  EENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPREYFNEKGGASQGNDNGSG 88
          +SNHHSLPREYFN     SQGNDN +G
Sbjct: 61 VSNHHSLPREYFNN----SQGNDNDNG 83

BLAST of CmaCh03G012260 vs. ExPASy TrEMBL
Match: A0A5A7TVP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00070 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.3e-26
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
          MKFLVLILS MILSYTCS TSRRIAL G H QGNQ+F KQ++  EENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSTMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPREYFNEKGGASQGNDNGSG 88
          ISNHHSLPREYFN     SQGNDN +G
Sbjct: 61 ISNHHSLPREYFNN----SQGNDNDNG 83

BLAST of CmaCh03G012260 vs. ExPASy TrEMBL
Match: A0A2P5FV74 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024730 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRK-SNFKHPES 60
          MK   LIL +M ++ TC     R  L G + Q  ++ L + KT E N   K S+ K+PE 
Sbjct: 1  MKVAALILILM-MATTCLAAPLRGMLGGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYPER 60

Query: 61 GISNHHSLPREYFNEKGGASQG-----NDNGSGQ 89
           I+NHHS+PR+Y+N+KGG SQG     +D+G+GQ
Sbjct: 61 NINNHHSIPRQYYNDKGGNSQGDGSDNSDSGTGQ 93

BLAST of CmaCh03G012260 vs. ExPASy TrEMBL
Match: A0A2P5CH57 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153340 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.0e-05
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRK-SNFKHPES 60
          MK   L L +M ++ TC    RR  LAG + Q  ++ L + KT E N   K S+ K+ E 
Sbjct: 1  MKVAALFLILM-MATTCLAAPRRAMLAGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYAER 60

Query: 61 GISNHHSLPREYFNEKGGASQG-----NDNGSGQ 89
           I+NHHS+PR+Y+N+KGG  QG     +D+G+GQ
Sbjct: 61 KINNHHSIPRQYYNDKGGNYQGDGSDNSDSGTGQ 93

BLAST of CmaCh03G012260 vs. ExPASy TrEMBL
Match: A0A7N2M795 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
          MK +VL L +M++S +C    RR  L G + Q  Q +  Q + A E++  +S  ++P+S 
Sbjct: 1  MKLVVLFLVIMVVSSSCLAVPRRGMLGGIYGQ-EQLYHAQKRKAMEDSKEESKVEYPDSS 60

Query: 61 ISNHHSLPREYFNEKGGASQGNDNGSGQ 89
          I+NHH++PR+ FN   G+SQG +  S +
Sbjct: 61 INNHHTIPRQNFNSGDGSSQGENGESNE 87

BLAST of CmaCh03G012260 vs. NCBI nr
Match: KAG6604413.1 (hypothetical protein SDJN03_05022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 97/104 (93.27%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
           MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQ+KTAEEN SRKSNFKHPESG
Sbjct: 1   MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQAKTAEENKSRKSNFKHPESG 60

Query: 61  ISNHHSLPREYFNEKGGASQGNDNGSG--QSMRVEGGALSSSNH 103
           ISNHHSLPREYFNEKGGASQGNDNGSG  Q  R EGGALSSSNH
Sbjct: 61  ISNHHSLPREYFNEKGGASQGNDNGSGSRQGTREEGGALSSSNH 104

BLAST of CmaCh03G012260 vs. NCBI nr
Match: KAE8647398.1 (hypothetical protein Csa_003831 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 86/131 (65.65%), Postives = 94/131 (71.76%), Query Frame = 0

Query: 1   MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
           MKFLVLILSMMILSYTCS TSRRIAL G H QGNQ+F KQ++  EENNSRKSNFKHPESG
Sbjct: 1   MKFLVLILSMMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61  ISNHHSLPREYFNEKGGASQGNDNGSG--------------QSMRVEGGALSSSNHIPSA 118
           +SNHHSLPREYFN     SQGNDN +G              Q MRVEGG LS  N    +
Sbjct: 61  VSNHHSLPREYFNN----SQGNDNDNGNGGSGVPVFQGVGNQVMRVEGGGLSYCNRYHLS 120

BLAST of CmaCh03G012260 vs. NCBI nr
Match: KAA0047240.1 (hypothetical protein E6C27_scaffold908G00330 [Cucumis melo var. makuwa] >TYK05876.1 hypothetical protein E5676_scaffold432G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRKSNFKHPESG 60
          MKFLVLILS MILSYTCS TSRRIAL G H QGNQ+F KQ++  EENNSRKSNFKHPESG
Sbjct: 1  MKFLVLILSTMILSYTCSATSRRIALGGLHGQGNQYFFKQAQKVEENNSRKSNFKHPESG 60

Query: 61 ISNHHSLPREYFNEKGGASQGNDNGSG 88
          ISNHHSLPREYFN     SQGNDN +G
Sbjct: 61 ISNHHSLPREYFNN----SQGNDNDNG 83

BLAST of CmaCh03G012260 vs. NCBI nr
Match: POO01696.1 (hypothetical protein TorRG33x02_024730 [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRK-SNFKHPES 60
          MK   LIL +M ++ TC     R  L G + Q  ++ L + KT E N   K S+ K+PE 
Sbjct: 1  MKVAALILILM-MATTCLAAPLRGMLGGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYPER 60

Query: 61 GISNHHSLPREYFNEKGGASQG-----NDNGSGQ 89
           I+NHHS+PR+Y+N+KGG SQG     +D+G+GQ
Sbjct: 61 NINNHHSIPRQYYNDKGGNSQGDGSDNSDSGTGQ 93

BLAST of CmaCh03G012260 vs. NCBI nr
Match: PON60348.1 (hypothetical protein PanWU01x14_153340 [Parasponia andersonii])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 1  MKFLVLILSMMILSYTCSVTSRRIALAGFHEQGNQHFLKQSKTAEENNSRK-SNFKHPES 60
          MK   L L +M ++ TC    RR  LAG + Q  ++ L + KT E N   K S+ K+ E 
Sbjct: 1  MKVAALFLILM-MATTCLAAPRRAMLAGIYGQEQRYRLGKGKTIEGNKMEKMSSVKYAER 60

Query: 61 GISNHHSLPREYFNEKGGASQG-----NDNGSGQ 89
           I+NHHS+PR+Y+N+KGG  QG     +D+G+GQ
Sbjct: 61 KINNHHSIPRQYYNDKGGNYQGDGSDNSDSGTGQ 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK821.7e-2679.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446330 PE=4 SV=1[more]
A0A5A7TVP96.3e-2679.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P5FV741.6e-0543.62Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024730 PE=4 SV... [more]
A0A2P5CH578.0e-0542.55Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153340 PE... [more]
A0A7N2M7958.9e-0437.50Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6604413.13.8e-4193.27hypothetical protein SDJN03_05022, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647398.12.1e-3165.65hypothetical protein Csa_003831 [Cucumis sativus][more]
KAA0047240.11.3e-2579.31hypothetical protein E6C27_scaffold908G00330 [Cucumis melo var. makuwa] >TYK0587... [more]
POO01696.13.3e-0543.62hypothetical protein TorRG33x02_024730 [Trema orientale][more]
PON60348.11.7e-0442.55hypothetical protein PanWU01x14_153340 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..106
NoneNo IPR availablePANTHERPTHR36040OS04G0188500 PROTEINcoord: 1..90
NoneNo IPR availablePANTHERPTHR36040:SF5BNAC01G24170D PROTEINcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G012260.1CmaCh03G012260.1mRNA