CmaCh03G003380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G003380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	BHLH domain-containing protein
Location	Cma_Chr03: 4099121 .. 4099675 (+)
RNA-Seq Expression	CmaCh03G003380
Synteny	CmaCh03G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGCGAAACCAGAAGGGAGAAGATGAAGAAGAACGGTGGTGGTAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGAGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGTGGCACCAAAATGGACACCGTGTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACTCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCACCGCCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCTCTGAAAACGAGGTTGTTAAAATGGAGGAGCCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

mRNA sequence

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGCGAAACCAGAAGGGAGAAGATGAAGAAGAACGGTGGTGGTAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGAGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGTGGCACCAAAATGGACACCGTGTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACTCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCACCGCCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCTCTGAAAACGAGGTTGTTAAAATGGAGGAGCCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

Coding sequence (CDS)

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGCGAAACCAGAAGGGAGAAGATGAAGAAGAACGGTGGTGGTAGCGGCGGAGGGAAAAGGAGCAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGAGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTAGTCCCCGGTGGCACCAAAATGGACACCGTGTCAATGCTCGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACTCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCGCCGCCACCGCCGCCGTCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCTCTGAAAACGAGGTTGTTAAAATGGAGGAGCCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

Protein sequence

MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSSAATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDAYMNF

Homology

[Close]

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 2   DYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARERR 61
           D++  + NP+S  ++S       R +        +G  KRS+    LSTDPQSVAAR+RR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK------SETGNTKRSRSTSTLSTDPQSVAARDRR 62

Query: 62  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           HRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +SS
Sbjct: 63  HRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSS 114

[Close]

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 37  GGGKRSKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKF 96
           GGG+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML++AIHYVKF
Sbjct: 30  GGGRRRPGA-KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKF 89

Query: 97  LKTQIWLHQTMINFVDYDDPSSSSAATAAVNCPNSGI 134
           LK Q+ LHQ  +  V +++    +   AA +  ++ +
Sbjct: 90  LKAQVTLHQAAL--VQHEEGCQHADVAAAFSAADADL 123

[Close]

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL-- 182

Query: 106 TMINFVDYDDPSSSSAATAAV 127
            + N   Y  P     A+ AV
Sbjct: 183 -LNNNTGYTPPPPQDQASQAV 200

[Close]

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL
Match: A0A6J1IKQ9 (transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER 60
           MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS 120

Query: 121 AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA 180
           AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA
Sbjct: 121 AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA 180

Query: 181 YMNF 185
           YMNF
Sbjct: 181 YMNF 184

[Close]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGG-DGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARE 60
           MDY+FPASNPSSCGSSSGG   G TR+EK+KKN  GS GGKRSKGV+KLSTDPQSVAARE
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD S+S
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 SAATAAVNCPNSGIPVGG------DMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPSGQ 180
           +AA AAVNC      + G      D N FV+S+N+VVKMEEP   LP LDP+N+YFPSGQ
Sbjct: 121 TAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFPSGQ 180

Query: 181 DQFMCSSYDAYMNF 185
           DQ+MCSSYD YMNF
Sbjct: 181 DQYMCSSYDPYMNF 194

[Close]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.5e-71
Identity = 153/196 (78.06%), Postives = 166/196 (84.69%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGE-TRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARE 60
           MDY+FPASNPSSCGSSSGG   E TR+EK+KKN  GS GGKRSKGV+KLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD S+S
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 SAA--TAAVNCPNSGIPVGG------DMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPS 180
           +AA   AAVNC      + G      D N FV+S+N+VVKMEEP   LP LDP+N+YFPS
Sbjct: 121 TAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFPS 180

Query: 181 GQDQFMCSSYDAYMNF 185
           GQDQ+MCSSYDAYMNF
Sbjct: 181 GQDQYMCSSYDAYMNF 196

[Close]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.8e-63
Identity = 145/198 (73.23%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGG-GKRSKGVMKLSTDPQSVAARE 60
           MDY+FPASNPSSCGSSSGG GG   +EKMKKN    GG GKRSKGV+KLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG-GGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  S+S
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD--SNS 120

Query: 121 SAATAAVNCPNSGIP----VGGDM----NFVFSENEVVKMEEP-FLPHLDP---DNIYFP 180
           SAA +A    NSG P      G+     N ++ +N+VVKMEEP FLP LDP   +N+YFP
Sbjct: 121 SAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYFP 180

Query: 181 SG-QDQFMCSSYDAYMNF 185
           S  QDQF+ SSYD Y+NF
Sbjct: 181 SDHQDQFISSSYDPYINF 195

[Close]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62
Identity = 144/199 (72.36%), Postives = 159/199 (79.90%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGS--GGGKRSKGVMKLSTDPQSVAAR 60
           MDY+FPASNPSSCGSSSGG GG   +EKMKKN   +  G GKRSKGV+KLSTDPQSVAAR
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG---KEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSS 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  S+
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD--SN 120

Query: 121 SSAATAAVNCPNSGIP----VGGDM----NFVFSENEVVKMEEP-FLPHLDP---DNIYF 180
           SSAA +A    NSG P      G+     N ++ +N+VVKMEEP FLP LDP   +N+YF
Sbjct: 121 SSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYF 180

Query: 181 PSG-QDQFMCSSYDAYMNF 185
           PS  QDQF+ SSYD Y+NF
Sbjct: 181 PSDHQDQFISSSYDPYINF 194

[Close]

BLAST of CmaCh03G003380 vs. NCBI nr
Match: XP_022978297.1 (transcription factor LAX PANICLE 1 [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER 60
           MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSS 120

Query: 121 AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA 180
           AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA
Sbjct: 121 AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCSSYDA 180

Query: 181 YMNF 185
           YMNF
Sbjct: 181 YMNF 184

[Close]

BLAST of CmaCh03G003380 vs. NCBI nr
Match: XP_023545106.1 (transcription factor LAX PANICLE 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 177/188 (94.15%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGG----GSGGGKRSKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETR+EKMKKNGG    GSGGGKRSKGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSSAATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFMCS 180
           SSSSAA  AVNCPNSGIPVGGDMNFVF ENEVVKMEE FLPHLDPDNIYFPSGQDQFMCS
Sbjct: 121 SSSSAAATAVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFMCS 180

Query: 181 SYDAYMNF 185
           S+DAYMNF
Sbjct: 181 SFDAYMNF 188

[Close]

BLAST of CmaCh03G003380 vs. NCBI nr
Match: KAG6603572.1 (Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGG----GSGGGKRSKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETR+EKMKKNGG    GSGGGKR+KGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSS--AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFM 180
           SSSS  AATAA NCPNSGIPVGGDMNFVF ENEVVKMEE FLPHLDPDNIYFPSGQDQFM
Sbjct: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180

Query: 181 CSSYDAYMNF 185
           CSSYDAYMNF
Sbjct: 181 CSSYDAYMNF 190

[Close]

BLAST of CmaCh03G003380 vs. NCBI nr
Match: KAG6595412.1 (Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73
Identity = 153/194 (78.87%), Postives = 166/194 (85.57%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGG-DGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARE 60
           MDY+FPASNPSSCGSSSGG   G TR+EK+KKN  GS GGKRSKGV+KLSTDPQSVAARE
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD S+S
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 SAATAAVNCPNSGIPVGG------DMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPSGQ 180
           +AA AAVNC      + G      D N FV+S+N+VVKMEEP   LPHLDP+N+YFPSGQ
Sbjct: 121 TAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPHLDPNNLYFPSGQ 180

Query: 181 DQFMCSSYDAYMNF 185
           DQ+MCSSYD YMNF
Sbjct: 181 DQYMCSSYDPYMNF 194

[Close]

BLAST of CmaCh03G003380 vs. NCBI nr
Match: XP_022931869.1 (transcription factor bHLH140 [Cucurbita moschata])

HSP 1 Score: 282.0 bits (720), Expect = 3.8e-72
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGG-DGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARE 60
           MDY+FPASNPSSCGSSSGG   G TR+EK+KKN  GS GGKRSKGV+KLSTDPQSVAARE
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD S+S
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 SAATAAVNCPNSGIPVGG------DMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPSGQ 180
           +AA AAVNC      + G      D N FV+S+N+VVKMEEP   LP LDP+N+YFPSGQ
Sbjct: 121 TAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFPSGQ 180

Query: 181 DQFMCSSYDAYMNF 185
           DQ+MCSSYD YMNF
Sbjct: 181 DQYMCSSYDPYMNF 194

[Close]

BLAST of CmaCh03G003380 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-27
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 2   DYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAARERR 61
           D++  + NP+S  ++S       R +        +G  KRS+    LSTDPQSVAAR+RR
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK------SETGNTKRSRSTSTLSTDPQSVAARDRR 62

Query: 62  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSS 120
           HRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +SS
Sbjct: 63  HRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSS 114

[Close]

BLAST of CmaCh03G003380 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL-- 182

Query: 106 TMINFVDYDDPSSSSAATAAV 127
            + N   Y  P     A+ AV
Sbjct: 183 -LNNNTGYTPPPPQDQASQAV 200

[Close]

BLAST of CmaCh03G003380 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of CmaCh03G003380 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 102
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of CmaCh03G003380 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 46  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 105
           +K+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 106 TMINFVDYDDPSSSSAATA 125
            +   +D  + S SSA T+
Sbjct: 333 NLRPKLDQTNLSFSSAPTS 351

The following BLAST results are available for this feature:

BLAST of CmaCh03G003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	1.2e-25	55.93	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	1.5e-23	59.79	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9LXD8	1.6e-17	61.73	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
Q9FHA7	2.1e-17	76.79	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	2.1e-17	76.79	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]

BLAST of CmaCh03G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKQ9	1.1e-98	100.00	transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 P...	[more]
A0A6J1EVF6	1.8e-72	78.35	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A6J1HPK4	3.5e-71	78.06	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A0A0KXM0	7.8e-63	73.23	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5A7T6E1	1.7e-62	72.36	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of CmaCh03G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978297.1	2.4e-98	100.00	transcription factor LAX PANICLE 1 [Cucurbita maxima]	[more]
XP_023545106.1	1.1e-92	94.15	transcription factor LAX PANICLE 1 [Cucurbita pepo subsp. pepo]	[more]
KAG6603572.1	1.9e-92	94.21	Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma...	[more]
KAG6595412.1	4.5e-73	78.87	Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma...	[more]
XP_022931869.1	3.8e-72	78.35	transcription factor bHLH140 [Cucurbita moschata]	[more]

BLAST of CmaCh03G003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	8.9e-27	55.93	APRATAXIN-like	[more]
AT5G09750.1	1.2e-18	61.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	1.5e-18	76.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	1.5e-18	76.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	2.0e-18	55.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 54..103 e-value: 1.6E-12 score: 57.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 58..97 e-value: 1.3E-7 score: 31.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 48..97 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 51..109 e-value: 2.9E-10 score: 42.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 53..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 30..138
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 30..138
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 49..108 e-value: 8.82362E-41 score: 130.204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G003380.1	CmaCh03G003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity