CmaCh02G017220 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G017220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description60S ribosomal protein L23
LocationCma_Chr02: 9694914 .. 9699650 (+)
RNA-Seq ExpressionCmaCh02G017220
SyntenyCmaCh02G017220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTCTCTTTATATGGAACTTCCCCTTTTGGCCATTACAAATGAGCCTATTGCTCTTTAAACCATTATTCAACGACCAAGCTTCAGGCAACCATCGGCGGCTCCTCCACTTCCTCCGTCGTTGTTTATCGCCGGAATTTCAGATGCTGACCAAAACCGCCGTCGTTTCATCCGCTGCCAGAGTAAGAACAATTTCTTATTTTAGATGAATAAATACCGCCCTTTATTTATTTATTTAATTATAACATAAGTGTAGGTTAGATAAATGAATTCTTAAACAAAGGTTAATCAAACCCAAACGACCGTGTTTATATTGCAATATTAAAAAGAAATAATTTAGTTGATTTTGAGATTCTAATTTTAATATTTAAATTAAAATATTTTTTTATTATTAAAGATTATGTTTTAATATTAAAATTAGAAATTTTAGACATAATGTTAGATAAAATATTATATATATATATATATATATATAATATTTATTTATTATAATTTTTTATAAAGATTATATTTATTGAAAACTTTAAAATGAAATATTAGCTAGGGAAGCATTAAATGAAAATTTTGGAAATGGCTAGGATGGGAACTAAGAAGGTTTCTTTGTCCCCACCACATCTCGTGGGCATCTCTAATTAAAACCTACTAGTTTAAGGATGTTGGTATGAAATTAATGTATAACACCAATTAATAAAAATCTCAAAATTCACCATATTTATATTAAAAATTAAATTAGTTTTTATTTTATTTTTCTCAATCGAGTTCGAGAAGGTAATTAGTATATGACTAAGACATAAATAAAAACTTAAACACAATCTTTAACTAACTAAATATCAAAATAGCTAATTATAGAAAATTCCAATTTAAAAAAGACCTCTAATATTTTTTAAAAACTAAAAGATACTCTCACTGAATTTCAAAAATATTTTGTTATTTTCAAAACTATAAATACTCTTCTTCAAAAATATTTAAAAAATATTCTTACTCAAAATTGCTTATTCTATCTCATCTTTCTTCCATCATGAAAATGAATGAAAATAATAAATAATCAGCATTTAAAACCATCAAATTGACTAAATAAATTCTAAAAACGTCTATAATTATAATGTTTATTTTATTGAACTAAAATTAATAATTTATAGGTATTTTTTATTATGTGGGCTAATTGAAAAGTGCGGAGTAATAAACGATACATCTCTCCGACTTGGCAAGAAAGACTGAATTATTTTTCTCCGAGATTTAATATTTTATATACATATTTAAAAATATTTGTTGATTTCTTTTTCTCCAAGATTTAATTCAATATACATATGTTCTAAAATCTTGGTTTCTTCTTCATCAGGAAGCCATGGCGATGAACAGCAGCAGCCACTTACCAGAGGACATCATAATTGAAATTCTTCGCCACTTCTCTCTAAGATCTCTCGCTAAAGCAAACTGCGTCTCTAAGCTCTGGCAAACCCATATTTCCACCATACCTCTCCTTCTTCATGCCGCCATTTCCTCTCCTCTGCACCATGGCTTCTTCTTTCAGGGCTCCACCATCAGCAAAAATGGCGTCCCGATTCACTTCTTCCCTTCCTCTCTCAATATTCTCAACACCCATTTCTATAAACTGATTTCCTCTAGCAACGGTCTTCTTCTCTGCGGCAAATCCAATCAAAACCCTATTGTCAACTACTCTGTCTGGAATCCCGCCTCCAATCGCCTGATTCCAATCCCAAAACCAAGGAATCTCTTCACCGGCGTTAAGATCGGATTCCATTCCCATGATTCTGTTTCGTTCACCATTCTTCGATTTGGGAATTTAGGGCTCGAACCGATGGAGATTTTCTCGTCTGAAACAGGGGAATGGCGGCACTTGGCCTTCAATTTGGCGATCGATTCATTGTTTTTGCCCTTCGAAGGTCCGTCGGCGGTGGTTCTAAACGGGGTGTTTTATTGGCTGGAGTTTCGATCGATGATTTACGCTTTCGATTTGCTAAAAAACGAGTTTCTGAAAGTGGGATTTCCATTTGAGGAACCGGAGTATCGCCGGGAAGTATTCTCCCGTTGCCTCGCCGTCGCGGGTGGGGAGGTGGTAATGGCGTCGACCAACGGCGAGGTTATTGAGATTTGGATTCTTCAGGATAAGGCTTCGTCTTTGTGGGGTTTGAAGAGTAGATTAAACGTTGAAAGTCTCGTTGGCATTATCGCAAACACCTTGTGCGCAAGGGCGGCGACGGCGGCGGTTGGGCGGAGAATTGTTGGGATTGTGGGGTTTCAGGCATGGGATTCGGAAAGGATTTACTTGAACACGACGGAGGTAGTGGTTTGTTGTGATATTGGAAGTGCGAAAGTTGAGATTGTTCACCGGTTTGATGAGAGCTTGGGATGTACGGATGTTTCTGACTTCATGTTCTTACCTTACGAGTGTGTTCAGCTTGGTTGATTGTTGTAATGTTCGTAATGAGTAGAGCCCAGATATTTAAACCTCTACCAACTCGGTTAGGACGTGTCCACCCGTTAAGCTTTATTCAATAACACTCATGGTCACTCGTGTAGATTTGAGTCTTCACATTTTGCTTCAATGTTTCATTTCATTGACTATTATCATTATTGCTTTCTTCCTTGACCTGATTTCTTCCCAAATCTATATATATATATATATATATATATATTTTGTCCCATCAATCTGATCAAATTCTTGGATAATAGCAATTCTCCTTTTAAGATTATTTCTAAGATTATTTCAAAAATTAAAAATATTTTAAGATTATTTCTAAGATTATTTCAAAAATTAAAAATATTTGATGTTTATAACAAATATTAATATTAATTGTGAATGGTAAATGTTTGATATTTGAACCTACACTAAAAATGATTAATTTGGTTAATTTAGGGTTAAGTTTGTTTTAGTTTTCCTATTAATCAACGAAACGATGTCGTATTAAGTCATGTGAAACGGGCTTAGCAAAACACGGAAAGGACAGTAAAGAACTGCGTTTAGACACATCGACTGAAACCCTAACCCCAGAAAACGTAGACTCCGTGCCGTCGTCTTTCATATATTAAGAACCGCATTTGTTTTCATTTGCTTTCTTGATCGGAGGATAGAGAAGGCAGCTAGAGAGCCCATCGACAATGTCGAAGCGAGGTATGGTTTGATCGTTCTATCTCCATTTTGTTCCTGACATTCTCTTTATATGTAACTGTAAACGCACTAGTTGATTCGATCTTTGTTTTGCTACTGTTTTCATACTCTTAGATTTGAGATTTTTTTTATTGCTGTGTATCTATTTAGGTAGGGGAGGTTCCGCCGGGAATAAATTTAGGATGTCGCTAGGTCTTCCTGTGGCGGCTACAGTGAACTGTGCCGATAACACAGGAGCTAAGAACCTCTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGTCTGCCATCTGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTGCCTGCTGTAATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTTATGTACTTCGAAGGTAATTCACTACTTAAATTATCTGTCGTATTTCGCTTCCGATCATTTTTATACCATGTTATCTTGCGTTTAGGTTAGTTTGTGTAGGCATATAGTTATCGTTCTAGTTAACATTGATCGGTTGGATTGTTGATATTGGATGTAGTATCGGCGGTTATTCTTTGTGATTGAACCTATCTTAAAATGTGGATTATTTCTGTTTTTTATGTGTTGTGGATGAAATTTGGGTTAAGAAAATCCTATTACTCCGTTAGTTTAGTTTCATACAAACATGGTCTGTGTAGATTGTTACTGGGAGTAATTTTGGTGCTTTCTATTTTAATTCGATGGAAAAGGTTATTCAGAGAAGCGAATATCTTCATTTTTCACTTTGGATTAAATGGCTTACTATGCGATCTAGTAGTAACGTTTTCAGTATAAGAATGGCTATCGGGTTATGTGTTTAGTATCATATTGTTGTCATTTTTTTGGGACTGTTTCATGTCTTCACCCATATAAAATTGAATTATATAGTTGTTGATTAAGAGTCTTTTTCGTTGTGCAGATAACGCTGGTGTCATCGTGAATCCCAAAGGAGAGATGAAAGGTATGATCTTCTCCTTTTTTAATGTATATAGTTCATATGTGATCTAGAAAATGATATGTAACATGTTAGTCTTCTGTGTTCATTTACATTAGAAGAAGAGAAATCACCACGCCCTTGATATTTTACTTTTGTTGATGTTTTATTTCTCTGGAACAATGCACCGTAAATATCCTTGTATTTGACCTTACTTAACTAGAAATGTAGTTTTAGAGTACTGATAATTTTGGAGGTGTTCTGGCTTTCATACTTTCGTTTATTTTGCTTTCATGGATTTGAATGGTTATTTTATTGGGTCTCGCAGGTTCAGCTATAACAGGCCCAATTGGAAAGGAATGTGCGGATCTCTGGCCGAGAATTGCAAGTGCTGCTAATGCCATTGTTTGACCATCAAATCAAGTGAATTGTCGTTTTTATCCTTCTATAGGCTAGGATTATATGATTAAATTTCATTGTTGGGAATAACTTACTTTTATCTTGACAAGAAATTATCGTTGTGAGTTTTGGTTGATACTCGATGTGTTTTATCTCTATAGATGAAGTTAATTTGTGCCCATGATTTGATTTCTGGTACCCATTCAAAAGTCTCC

mRNA sequence

CTCCTCTCTTTATATGGAACTTCCCCTTTTGGCCATTACAAATGAGCCTATTGCTCTTTAAACCATTATTCAACGACCAAGCTTCAGGCAACCATCGGCGGCTCCTCCACTTCCTCCGTCGTTGTTTATCGCCGGAATTTCAGATGCTGACCAAAACCGCCGTCGTTTCATCCGCTGCCAGAGAAGCCATGGCGATGAACAGCAGCAGCCACTTACCAGAGGACATCATAATTGAAATTCTTCGCCACTTCTCTCTAAGATCTCTCGCTAAAGCAAACTGCGTCTCTAAGCTCTGGCAAACCCATATTTCCACCATACCTCTCCTTCTTCATGCCGCCATTTCCTCTCCTCTGCACCATGGCTTCTTCTTTCAGGGCTCCACCATCAGCAAAAATGGCGTCCCGATTCACTTCTTCCCTTCCTCTCTCAATATTCTCAACACCCATTTCTATAAACTGATTTCCTCTAGCAACGGTCTTCTTCTCTGCGGCAAATCCAATCAAAACCCTATTGTCAACTACTCTGTCTGGAATCCCGCCTCCAATCGCCTGATTCCAATCCCAAAACCAAGGAATCTCTTCACCGGCGTTAAGATCGGATTCCATTCCCATGATTCTGTTTCGTTCACCATTCTTCGATTTGGGAATTTAGGGCTCGAACCGATGGAGATTTTCTCGTCTGAAACAGGGGAATGGCGGCACTTGGCCTTCAATTTGGCGATCGATTCATTGTTTTTGCCCTTCGAAGGTCCGTCGGCGGTGGTTCTAAACGGGGTGTTTTATTGGCTGGAGTTTCGATCGATGATTTACGCTTTCGATTTGCTAAAAAACGAGTTTCTGAAAGTGGGATTTCCATTTGAGGAACCGGAGTATCGCCGGGAAGTATTCTCCCGTTGCCTCGCCGTCGCGGGTGGGGAGGTGGTAATGGCGTCGACCAACGGCGAGGTTATTGAGATTTGGATTCTTCAGGATAAGGCTTCGTCTTTGTGGGGTTTGAAGAGTAGATTAAACGTTGAAAGTCTCGTTGGCATTATCGCAAACACCTTGTGCGCAAGGGCGGCGACGGCGGCGGTTGGGCGGAGAATTGTTGGGATTGTGGGGTTTCAGGCATGGGATTCGGAAAGGATTTACTTGAACACGACGGAGGTAGTGGTTTGTTGTGATATTGGAAGTGCGAAAGTTGAGATTGTTCACCGGTTTGATGAGAGCTTGGGATGTACGGATAGAAGGCAGCTAGAGAGCCCATCGACAATGTCGAAGCGAGGTAGGGGAGGTTCCGCCGGGAATAAATTTAGGATGTCGCTAGGTCTTCCTGTGGCGGCTACAGTGAACTGTGCCGATAACACAGGAGCTAAGAACCTCTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGTCTGCCATCTGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTGCCTGCTGTAATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTTATGTACTTCGAAGATAACGCTGGTGTCATCGTGAATCCCAAAGGAGAGATGAAAGGTTCAGCTATAACAGGCCCAATTGGAAAGGAATGTGCGGATCTCTGGCCGAGAATTGCAAGTGCTGCTAATGCCATTGTTTGACCATCAAATCAAGTGAATTGTCGTTTTTATCCTTCTATAGGCTAGGATTATATGATTAAATTTCATTGTTGGGAATAACTTACTTTTATCTTGACAAGAAATTATCGTTGTGAGTTTTGGTTGATACTCGATGTGTTTTATCTCTATAGATGAAGTTAATTTGTGCCCATGATTTGATTTCTGGTACCCATTCAAAAGTCTCC

Coding sequence (CDS)

ATGAGCCTATTGCTCTTTAAACCATTATTCAACGACCAAGCTTCAGGCAACCATCGGCGGCTCCTCCACTTCCTCCGTCGTTGTTTATCGCCGGAATTTCAGATGCTGACCAAAACCGCCGTCGTTTCATCCGCTGCCAGAGAAGCCATGGCGATGAACAGCAGCAGCCACTTACCAGAGGACATCATAATTGAAATTCTTCGCCACTTCTCTCTAAGATCTCTCGCTAAAGCAAACTGCGTCTCTAAGCTCTGGCAAACCCATATTTCCACCATACCTCTCCTTCTTCATGCCGCCATTTCCTCTCCTCTGCACCATGGCTTCTTCTTTCAGGGCTCCACCATCAGCAAAAATGGCGTCCCGATTCACTTCTTCCCTTCCTCTCTCAATATTCTCAACACCCATTTCTATAAACTGATTTCCTCTAGCAACGGTCTTCTTCTCTGCGGCAAATCCAATCAAAACCCTATTGTCAACTACTCTGTCTGGAATCCCGCCTCCAATCGCCTGATTCCAATCCCAAAACCAAGGAATCTCTTCACCGGCGTTAAGATCGGATTCCATTCCCATGATTCTGTTTCGTTCACCATTCTTCGATTTGGGAATTTAGGGCTCGAACCGATGGAGATTTTCTCGTCTGAAACAGGGGAATGGCGGCACTTGGCCTTCAATTTGGCGATCGATTCATTGTTTTTGCCCTTCGAAGGTCCGTCGGCGGTGGTTCTAAACGGGGTGTTTTATTGGCTGGAGTTTCGATCGATGATTTACGCTTTCGATTTGCTAAAAAACGAGTTTCTGAAAGTGGGATTTCCATTTGAGGAACCGGAGTATCGCCGGGAAGTATTCTCCCGTTGCCTCGCCGTCGCGGGTGGGGAGGTGGTAATGGCGTCGACCAACGGCGAGGTTATTGAGATTTGGATTCTTCAGGATAAGGCTTCGTCTTTGTGGGGTTTGAAGAGTAGATTAAACGTTGAAAGTCTCGTTGGCATTATCGCAAACACCTTGTGCGCAAGGGCGGCGACGGCGGCGGTTGGGCGGAGAATTGTTGGGATTGTGGGGTTTCAGGCATGGGATTCGGAAAGGATTTACTTGAACACGACGGAGGTAGTGGTTTGTTGTGATATTGGAAGTGCGAAAGTTGAGATTGTTCACCGGTTTGATGAGAGCTTGGGATGTACGGATAGAAGGCAGCTAGAGAGCCCATCGACAATGTCGAAGCGAGGTAGGGGAGGTTCCGCCGGGAATAAATTTAGGATGTCGCTAGGTCTTCCTGTGGCGGCTACAGTGAACTGTGCCGATAACACAGGAGCTAAGAACCTCTATATCATTTCGGTGAAGGGGATCAAGGGCCGCCTCAACCGTCTGCCATCTGCTTGTGTTGGTGACATGGTCATGGCGACGGTCAAGAAGGGAAAACCTGACCTCAGGAAGAAGGTGCTGCCTGCTGTAATTGTCAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTCTTTATGTACTTCGAAGATAACGCTGGTGTCATCGTGAATCCCAAAGGAGAGATGAAAGGTTCAGCTATAACAGGCCCAATTGGAAAGGAATGTGCGGATCTCTGGCCGAGAATTGCAAGTGCTGCTAATGCCATTGTTTGA

Protein sequence

MSLLLFKPLFNDQASGNHRRLLHFLRRCLSPEFQMLTKTAVVSSAAREAMAMNSSSHLPEDIIIEILRHFSLRSLAKANCVSKLWQTHISTIPLLLHAAISSPLHHGFFFQGSTISKNGVPIHFFPSSLNILNTHFYKLISSSNGLLLCGKSNQNPIVNYSVWNPASNRLIPIPKPRNLFTGVKIGFHSHDSVSFTILRFGNLGLEPMEIFSSETGEWRHLAFNLAIDSLFLPFEGPSAVVLNGVFYWLEFRSMIYAFDLLKNEFLKVGFPFEEPEYRREVFSRCLAVAGGEVVMASTNGEVIEIWILQDKASSLWGLKSRLNVESLVGIIANTLCARAATAAVGRRIVGIVGFQAWDSERIYLNTTEVVVCCDIGSAKVEIVHRFDESLGCTDRRQLESPSTMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Homology
[Close]
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match: P49690 (60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-74
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match: Q07760 (60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.5e-74
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match: Q9XEK8 (60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-67
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 139

[Close]
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match: Q6PC14 (60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.8e-63
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAI 543
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match: Q3T057 (60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-62
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAI 543
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]
BLAST of CmaCh02G017220 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.6 bits (719), Expect = 1.4e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh02G017220 vs. TAIR 10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.6 bits (719), Expect = 1.4e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh02G017220 vs. TAIR 10
Match: AT3G04400.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.6 bits (719), Expect = 1.4e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 404 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 463
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 464 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 523
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 524 IGKECADLWPRIASAANAIV 544
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]
BLAST of CmaCh02G017220 vs. TAIR 10
Match: AT3G04400.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 255.0 bits (650), Expect = 1.4e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 419 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 478
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60

Query: 479 VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 538
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120

Query: 539 ANAIV 544
           ANAIV
Sbjct: 121 ANAIV 125

[Close]
BLAST of CmaCh02G017220 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 0 

Query: 429 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 488
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 489 RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 544
           R  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct: 68  RTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

The following BLAST results are available for this feature:
BLAST of CmaCh02G017220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496901.9e-7498.5760S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3[more]
Q077609.5e-7497.1460S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1[more]
Q9XEK81.3e-6790.7160S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1[more]
Q6PC145.8e-6385.6160S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1[more]
Q3T0571.3e-6284.8960S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2[more]
BLAST of CmaCh02G017220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G04480.11.4e-7598.57Ribosomal protein L14p/L23e family protein [more]
AT2G33370.11.4e-7598.57Ribosomal protein L14p/L23e family protein [more]
AT3G04400.11.4e-7598.57Ribosomal protein L14p/L23e family protein [more]
AT3G04400.21.4e-67100.00Ribosomal protein L14p/L23e family protein [more]
ATCG00780.12.4e-1133.61ribosomal protein L14 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 422..543
e-value: 3.2E-60
score: 216.1
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 425..543
e-value: 1.8E-34
score: 118.4
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 404..543
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 422..543
score: 19.384665
IPR001810F-box domainPFAMPF12937F-box-likecoord: 56..95
e-value: 1.2E-5
score: 25.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 37..93
e-value: 5.5E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR11761:SF1960S RIBOSOMAL PROTEIN L23coord: 404..543
IPR036853Ribosomal protein L14 superfamilyGENE3D2.40.150.20Ribosomal protein L14coord: 404..543
e-value: 2.2E-54
score: 184.9
IPR036853Ribosomal protein L14 superfamilySUPERFAMILY50193Ribosomal protein L14coord: 414..543
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 143..317
e-value: 3.6E-13
score: 47.3
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 482..508
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 48..160
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 146..365

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G017220.1CmaCh02G017220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome