CmaCh02G016180 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G016180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor bHLH71-like
Location	Cma_Chr02: 9191464 .. 9193286 (-)
RNA-Seq Expression	CmaCh02G016180
Synteny	CmaCh02G016180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTAATTCTGTGCCTTCTCACGTGAAACTCTATATATCTCTTTCCTTTTACGACCATTTTGAAAACTTTAGCATTCTCTCAATTGCATTATATCTACCCACCCTAACCAAAGAACAACCTTGGAGCTTCAAAAACATGAGTATTGATGCTCTTTCCTCCAATGACTTGTTCAACTTAATCATCTACGACGCCATCTCTCCGACGCCGAACACTTCCCACGGAGTATGCGACTCGTCGGAGACTACTTTTTTCTCCAACCAAAAGGGTTTGAAGCATCAAGATCACCACCAACATGGCACGTTGGAACACCGGCCGAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGTAGCAACTGGGGGGCGGTCGGGTTGCAGCAAGGGAAGAGGAAAAGAAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGACGTAAGCTGATGAGTGAGCATCTCTCAGTGTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGTTTGTTCTCTTAATTTAATAACTTCTCGTTAATTAATGCATGAGATTTAAATTAATGTTCATAATTATGTCTTCAAGTTCATAACCATTCTAATTTTTTTTATTAGTGTTGGTAAAGCTTTGTGAAAATAGAAAAAAGAAAAAAAGCTACCACTTTTGTTCATATTTACCCTATTAATCTCCATTATGCTAATTGGTGGTTCAATTATTTCATTTTATGTGAAAGGTTCAATTTTTCCTCCCTTTTTGAATAGACCCATTTACAATTAGAGCTAAAAATTGAGGTCTTCTCCTAACCCTATTGATTATTGCAAGGTCCTAAAATCATGATAGTTGATAATAATGTGTGTTGATTGTATGAAGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTCCTATCAACACTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACACATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGACTTTCATCCATTGGTTCTTTACTCTATTAGCCTTAAGGTATATATATATATATGTGTGTCAGTTTTGATGAAATGGGCAACGAAATTTAATGATGATATGCATGAAACTGTGAAAATGCAGGTGGAAGAAGGGTGTCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATCAAATGGTTAGAATAATTGAGGAAGAAGGTGTTTTGTGTTAAATGTAAACAAAAAGCTTTGAGATTTGAATGGGAATCATCCATTAAAATGCCAAGTTCTGTGTGTGTGTGCGTGAGTGTGCATGTGGGTTGGTTTGGTGTGATTTGTAAATTAATATATTGTTTTGTAGCTATCAAGGGTTTGTCTTGTTTGCTTTAGTTTCCTTTTCTTTGGAGACCACACAAAAGGGAGAGAGGGACAGATGAGAAGAAAAAGTTGTCAAAGGGATTGGCTTGGATTCACCTCTCTTCCTTTGCTTCTTCCTCCTCAACTTTTCATCACCATCCAAGTTAGTTACAGGATTCTTTTTTTGGAGGGAGGCTTGTGTTCATCTTCTTCTTCCT

mRNA sequence

GATCTAATTCTGTGCCTTCTCACGTGAAACTCTATATATCTCTTTCCTTTTACGACCATTTTGAAAACTTTAGCATTCTCTCAATTGCATTATATCTACCCACCCTAACCAAAGAACAACCTTGGAGCTTCAAAAACATGAGTATTGATGCTCTTTCCTCCAATGACTTGTTCAACTTAATCATCTACGACGCCATCTCTCCGACGCCGAACACTTCCCACGGAGTATGCGACTCGTCGGAGACTACTTTTTTCTCCAACCAAAAGGGTTTGAAGCATCAAGATCACCACCAACATGGCACGTTGGAACACCGGCCGAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGTAGCAACTGGGGGGCGGTCGGGTTGCAGCAAGGGAAGAGGAAAAGAAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGACGTAAGCTGATGAGTGAGCATCTCTCAGTGTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTCCTATCAACACTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACACATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGACTTTCATCCATTGGTTCTTTACTCTATTAGCCTTAAGGTGGAAGAAGGGTGTCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATCAAATGGTTAGAATAATTGAGGAAGAAGGTGTTTTGTGTTAAATGTAAACAAAAAGCTTTGAGATTTGAATGGGAATCATCCATTAAAATGCCAAGTTCTGTGTGTGTGTGCGTGAGTGTGCATGTGGGTTGGTTTGGTGTGATTTGTAAATTAATATATTGTTTTGTAGCTATCAAGGGTTTGTCTTGTTTGCTTTAGTTTCCTTTTCTTTGGAGACCACACAAAAGGGAGAGAGGGACAGATGAGAAGAAAAAGTTGTCAAAGGGATTGGCTTGGATTCACCTCTCTTCCTTTGCTTCTTCCTCCTCAACTTTTCATCACCATCCAAGTTAGTTACAGGATTCTTTTTTTGGAGGGAGGCTTGTGTTCATCTTCTTCTTCCT

Coding sequence (CDS)

ATGAGTATTGATGCTCTTTCCTCCAATGACTTGTTCAACTTAATCATCTACGACGCCATCTCTCCGACGCCGAACACTTCCCACGGAGTATGCGACTCGTCGGAGACTACTTTTTTCTCCAACCAAAAGGGTTTGAAGCATCAAGATCACCACCAACATGGCACGTTGGAACACCGGCCGAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGTAGCAACTGGGGGGCGGTCGGGTTGCAGCAAGGGAAGAGGAAAAGAAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGACGTAAGCTGATGAGTGAGCATCTCTCAGTGTTACGTTCCCTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTCCTATCAACACTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACACATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACTGACTTTCATCCATTGGTTCTTTACTCTATTAGCCTTAAGGTGGAAGAAGGGTGTCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATCAAATGGTTAGAATAATTGAGGAAGAAGGTGTTTTGTGTTAA

Protein sequence

MSIDALSSNDLFNLIIYDAISPTPNTSHGVCDSSETTFFSNQKGLKHQDHHQHGTLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSDSNSSQYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEEGVLC

Homology

[Close]

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot
Match: Q56XR0 (Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.8e-51
Identity = 140/326 (42.94%), Postives = 183/326 (56.13%), Query Frame = 0


Query: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGVCDSSETTFFSNQKGLKHQDHHQHGTLEHRP 60
           M+++ALSSN L N ++ + +SPTP  S    +          K    +  +Q    + +P
Sbjct: 1   MTLEALSSNGLLNFLLSETLSPTPFKSLVDLEPLPENDVIISKNTISEISNQEPPPQRQP 60

Query: 61  KPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKL 120
                                   +GK++R+RKP+ CKN+EEAE QRMTHIAVERNRR+ 
Sbjct: 61  P--------------------ATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQ 120

Query: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKK----------LQI 180
           M++HLSVLRSLMP+ +  +GDQASIVGGA++F+KELEH L +LEA+K             
Sbjct: 121 MNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSS 180

Query: 181 LHQEIEEKQENYKNEDSVRRKLF-------SDSNSSQYSAKSKASSADIEVTLIETHANL 240
             Q+   +QEN     S+    F       S  N +  ++  K    D+EVTLIETHAN+
Sbjct: 181 TSQDSNGEQENPHQPSSLSLSQFFLHSYDPSQENRNGSTSSVKTPMEDLEVTLIETHANI 240

Query: 241 RILSIR-----------THRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGC 299
           RILS R              QL KL+A LQ+L L+ILHL+VT      +YSIS KVEE C
Sbjct: 241 RILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESC 300

[Close]

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot
Match: Q9SK91 (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 9.0e-50
Identity = 119/215 (55.35%), Postives = 154/215 (71.63%), Query Frame = 0


Query: 88  RKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVG 147
           R+++R+ + CKNKEE E QRMTHIAVERNRRK M+E+L+VLRSLMP SY QRGDQASIVG
Sbjct: 95  RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154

Query: 148 GAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSDSNS-SQYSAK-- 207
           GA+ +VKELEH+L ++E K+ +          +  K   S     F+D  S  QYS K  
Sbjct: 155 GAINYVKELEHILQSMEPKRTR------THDPKGDKTSTSSLVGPFTDFFSFPQYSTKSS 214

Query: 208 -----SKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPL 267
                S +S A+IEVT+ E+HAN++I++ +  RQLLKLI  LQ+LRLT+LHLNVT  H  
Sbjct: 215 SDVPESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNS 274

Query: 268 VLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEE 295
           +LYSIS++VEEG QL +VDDIA A +Q +R I+EE
Sbjct: 275 ILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303

[Close]

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot
Match: Q9C7T4 (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-45
Identity = 112/215 (52.09%), Postives = 154/215 (71.63%), Query Frame = 0


Query: 86  GKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASI 145
           G R+++R+ ++ KNKEE E QRMTHIAVERNRRK M+E+L+VLRSLMP  Y QRGDQASI
Sbjct: 103 GGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASI 162

Query: 146 VGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSD------SNSS 205
           VGGA+ ++KELEH L ++E   ++   ++     +  K   +     FSD       ++ 
Sbjct: 163 VGGAINYLKELEHHLQSME-PPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNR 222

Query: 206 QYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPL 265
             SA +    A+IEVT++E+HA+L+IL+ +  RQLLKL++ +Q+LRLT+LHLNVT     
Sbjct: 223 PTSAAAAEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDS 282

Query: 266 VLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEE 295
           VLYSIS+KVEEG QL +V+DIAAA +Q++R IEEE
Sbjct: 283 VLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEE 316

[Close]

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot
Match: Q9M128 (Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.3e-39
Identity = 107/251 (42.63%), Postives = 154/251 (61.35%), Query Frame = 0


Query: 55  TLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVE 114
           TLE   K +  +   P +   +  GAV +++ KRKRKR  +A KNK+E E QRMTHIAVE
Sbjct: 64  TLETNIKRDPGQTDDPEKDPRTENGAVTVKE-KRKRKR-TRAPKNKDEVENQRMTHIAVE 123

Query: 115 RNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQE 174
           RNRR+ M+EHL+ LRSLMP S++QRGDQASIVGGA++F+KELE +L +LEA+K +     
Sbjct: 124 RNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRK----- 183

Query: 175 IEEKQENYKNEDSVRRKLFSDSNSSQYSAKSKA-----------SSADIEVTLIETHANL 234
            +   E  K          + +NSS  S  + +            + ++E T+I+ H +L
Sbjct: 184 -DGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSL 243

Query: 235 RILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAA 294
           ++   R  RQ+LK I  ++ L+L ILHL ++     V+YS +LK+E+GC+L S D+IA A
Sbjct: 244 KVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATA 303

[Close]

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot
Match: O81037 (Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 104/224 (46.43%), Postives = 143/224 (63.84%), Query Frame = 0


Query: 66  RKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHL 125
           RKR  N   S       L   +++++R+ K  KN EE E+QRMTHIAVERNRR+ M+ HL
Sbjct: 158 RKRKNNNLAS-------LMTREKRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHL 217

Query: 126 SVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNE 185
           + LRS++P SY+QRGDQASIVGGA++FVK LE  L +LEA+K     Q+ ++ +E    +
Sbjct: 218 NSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSLEAQKRS---QQSDDNKEQIPED 277

Query: 186 DSVRRKLFSDSNSSQYSAKSKASS-ADIEVTLIETHANLRILSIRTHRQLLKLIAGLQAL 245
           +S+R      SN  + S K + SS   IE T+IE+H NL+I   R   QLL+ I  L+ L
Sbjct: 278 NSLRN---ISSNKLRASNKEEQSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKL 337

Query: 246 RLTILHLNVTD-FHPLVLYSISLKVEEGCQLRSVDDIAAAAHQM 288
           R T+LHLN+T   +  V YS +LK+E+ C L S D+I AA  Q+
Sbjct: 338 RFTVLHLNITSPTNTSVSYSFNLKMEDECNLGSADEITAAIRQI 368

[Close]

BLAST of CmaCh02G016180 vs. TAIR 10
Match: AT5G46690.1 (beta HLH protein 71 )

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-52
Identity = 140/326 (42.94%), Postives = 183/326 (56.13%), Query Frame = 0


Query: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGVCDSSETTFFSNQKGLKHQDHHQHGTLEHRP 60
           M+++ALSSN L N ++ + +SPTP  S    +          K    +  +Q    + +P
Sbjct: 1   MTLEALSSNGLLNFLLSETLSPTPFKSLVDLEPLPENDVIISKNTISEISNQEPPPQRQP 60

Query: 61  KPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKL 120
                                   +GK++R+RKP+ CKN+EEAE QRMTHIAVERNRR+ 
Sbjct: 61  P--------------------ATNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQ 120

Query: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKK----------LQI 180
           M++HLSVLRSLMP+ +  +GDQASIVGGA++F+KELEH L +LEA+K             
Sbjct: 121 MNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSS 180

Query: 181 LHQEIEEKQENYKNEDSVRRKLF-------SDSNSSQYSAKSKASSADIEVTLIETHANL 240
             Q+   +QEN     S+    F       S  N +  ++  K    D+EVTLIETHAN+
Sbjct: 181 TSQDSNGEQENPHQPSSLSLSQFFLHSYDPSQENRNGSTSSVKTPMEDLEVTLIETHANI 240

Query: 241 RILSIR-----------THRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGC 299
           RILS R              QL KL+A LQ+L L+ILHL+VT      +YSIS KVEE C
Sbjct: 241 RILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESC 300

[Close]

BLAST of CmaCh02G016180 vs. TAIR 10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 6.4e-51
Identity = 119/215 (55.35%), Postives = 154/215 (71.63%), Query Frame = 0


Query: 88  RKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVG 147
           R+++R+ + CKNKEE E QRMTHIAVERNRRK M+E+L+VLRSLMP SY QRGDQASIVG
Sbjct: 95  RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154

Query: 148 GAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSDSNS-SQYSAK-- 207
           GA+ +VKELEH+L ++E K+ +          +  K   S     F+D  S  QYS K  
Sbjct: 155 GAINYVKELEHILQSMEPKRTR------THDPKGDKTSTSSLVGPFTDFFSFPQYSTKSS 214

Query: 208 -----SKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPL 267
                S +S A+IEVT+ E+HAN++I++ +  RQLLKLI  LQ+LRLT+LHLNVT  H  
Sbjct: 215 SDVPESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNS 274

Query: 268 VLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEE 295
           +LYSIS++VEEG QL +VDDIA A +Q +R I+EE
Sbjct: 275 ILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303

[Close]

BLAST of CmaCh02G016180 vs. TAIR 10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 184.9 bits (468), Expect = 9.6e-47
Identity = 112/215 (52.09%), Postives = 154/215 (71.63%), Query Frame = 0


Query: 86  GKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASI 145
           G R+++R+ ++ KNKEE E QRMTHIAVERNRRK M+E+L+VLRSLMP  Y QRGDQASI
Sbjct: 103 GGRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASI 162

Query: 146 VGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRKLFSD------SNSS 205
           VGGA+ ++KELEH L ++E   ++   ++     +  K   +     FSD       ++ 
Sbjct: 163 VGGAINYLKELEHHLQSME-PPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNR 222

Query: 206 QYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPL 265
             SA +    A+IEVT++E+HA+L+IL+ +  RQLLKL++ +Q+LRLT+LHLNVT     
Sbjct: 223 PTSAAAAEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDS 282

Query: 266 VLYSISLKVEEGCQLRSVDDIAAAAHQMVRIIEEE 295
           VLYSIS+KVEEG QL +V+DIAAA +Q++R IEEE
Sbjct: 283 VLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEE 316

[Close]

BLAST of CmaCh02G016180 vs. TAIR 10
Match: AT4G01460.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-40
Identity = 107/251 (42.63%), Postives = 154/251 (61.35%), Query Frame = 0


Query: 55  TLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVE 114
           TLE   K +  +   P +   +  GAV +++ KRKRKR  +A KNK+E E QRMTHIAVE
Sbjct: 64  TLETNIKRDPGQTDDPEKDPRTENGAVTVKE-KRKRKR-TRAPKNKDEVENQRMTHIAVE 123

Query: 115 RNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQE 174
           RNRR+ M+EHL+ LRSLMP S++QRGDQASIVGGA++F+KELE +L +LEA+K +     
Sbjct: 124 RNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRK----- 183

Query: 175 IEEKQENYKNEDSVRRKLFSDSNSSQYSAKSKA-----------SSADIEVTLIETHANL 234
            +   E  K          + +NSS  S  + +            + ++E T+I+ H +L
Sbjct: 184 -DGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSL 243

Query: 235 RILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAA 294
           ++   R  RQ+LK I  ++ L+L ILHL ++     V+YS +LK+E+GC+L S D+IA A
Sbjct: 244 KVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATA 303

[Close]

BLAST of CmaCh02G016180 vs. TAIR 10
Match: AT2G46810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-37
Identity = 104/224 (46.43%), Postives = 143/224 (63.84%), Query Frame = 0


Query: 66  RKRHPNEAESSNWGAVGLQQGKRKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHL 125
           RKR  N   S       L   +++++R+ K  KN EE E+QRMTHIAVERNRR+ M+ HL
Sbjct: 158 RKRKNNNLAS-------LMTREKRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHL 217

Query: 126 SVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNE 185
           + LRS++P SY+QRGDQASIVGGA++FVK LE  L +LEA+K     Q+ ++ +E    +
Sbjct: 218 NSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQLQSLEAQKRS---QQSDDNKEQIPED 277

Query: 186 DSVRRKLFSDSNSSQYSAKSKASS-ADIEVTLIETHANLRILSIRTHRQLLKLIAGLQAL 245
           +S+R      SN  + S K + SS   IE T+IE+H NL+I   R   QLL+ I  L+ L
Sbjct: 278 NSLRN---ISSNKLRASNKEEQSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKL 337

Query: 246 RLTILHLNVTD-FHPLVLYSISLKVEEGCQLRSVDDIAAAAHQM 288
           R T+LHLN+T   +  V YS +LK+E+ C L S D+I AA  Q+
Sbjct: 338 RFTVLHLNITSPTNTSVSYSFNLKMEDECNLGSADEITAAIRQI 368

The following BLAST results are available for this feature:

BLAST of CmaCh02G016180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XR0	4.8e-51	42.94	Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1	[more]
Q9SK91	9.0e-50	55.35	Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2	[more]
Q9C7T4	1.3e-45	52.09	Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1	[more]
Q9M128	9.3e-39	42.63	Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1	[more]
O81037	1.3e-35	46.43	Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1	[more]

BLAST of CmaCh02G016180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46690.1	3.4e-52	42.94	beta HLH protein 71	[more]
AT1G22490.1	6.4e-51	55.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G72210.1	9.6e-47	52.09	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G01460.1	6.6e-40	42.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G46810.1	9.0e-37	46.43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..107
None	No IPR available	PANTHER	PTHR11969:SF54	TRANSCRIPTION FACTOR BHLH71	coord: 1..296
None	No IPR available	PANTHER	PTHR11969	MAX DIMERIZATION, MAD	coord: 1..296
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 111..162 e-value: 1.0E-7 score: 41.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 106..157 e-value: 2.5E-8 score: 33.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 105..156 score: 14.125597
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 96..188 e-value: 5.0E-11 score: 44.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 105..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G016180.1	CmaCh02G016180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding