CmaCh02G014830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G014830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sugar transport protein 1
Location	Cma_Chr02: 8489275 .. 8489757 (-)
RNA-Seq Expression	CmaCh02G014830
Synteny	CmaCh02G014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATATCTCAGGTTGTGGTTACAGCTATGATCGCTTACAAGTTCGGCCTCGATGGAGTTGCCGGGGAATTGTCGAAGGAGTATGCCGGGGCAGTGATGTTGTTCATATGCATATACACTGCAGGGTTTGCTTGGTCGTGGGGGCCTTTGGGATGGTTGGTTCCAAGTGAAATATTTTCTCTAGAAGTTCGATCGGCCCTTCAAAGTGTGAACGTTTGGGTGAATATGATCTTCACTTTTGTGGTTGCTCATGCGTTCACGGCTATGCTGTGCCACATGAAATTTGGGATGTTCATATTTTTTGCGTTCTTCGTGGTGGTGATGAGCATTTTCATATACAAGTTTCTGCCGGAGACAAAGGGTGTGCCTATTGAAGCGATGACTCTTGTTTGGCAGAAACATCCGTATTGGGCAAAATATGTGACCCAAGATCAAACTCAAACTCACACAACTGAAACCCCACGTACCTCTTCCGATTAG

mRNA sequence

ATGTTCATATCTCAGGTTGTGGTTACAGCTATGATCGCTTACAAGTTCGGCCTCGATGGAGTTGCCGGGGAATTGTCGAAGGAGTATGCCGGGGCAGTGATGTTGTTCATATGCATATACACTGCAGGGTTTGCTTGGTCGTGGGGGCCTTTGGGATGGTTGGTTCCAAGTGAAATATTTTCTCTAGAAGTTCGATCGGCCCTTCAAAGTGTGAACGTTTGGGTGAATATGATCTTCACTTTTGTGGTTGCTCATGCGTTCACGGCTATGCTGTGCCACATGAAATTTGGGATGTTCATATTTTTTGCGTTCTTCGTGGTGGTGATGAGCATTTTCATATACAAGTTTCTGCCGGAGACAAAGGGTGTGCCTATTGAAGCGATGACTCTTGTTTGGCAGAAACATCCGTATTGGGCAAAATATGTGACCCAAGATCAAACTCAAACTCACACAACTGAAACCCCACGTACCTCTTCCGATTAG

Coding sequence (CDS)

ATGTTCATATCTCAGGTTGTGGTTACAGCTATGATCGCTTACAAGTTCGGCCTCGATGGAGTTGCCGGGGAATTGTCGAAGGAGTATGCCGGGGCAGTGATGTTGTTCATATGCATATACACTGCAGGGTTTGCTTGGTCGTGGGGGCCTTTGGGATGGTTGGTTCCAAGTGAAATATTTTCTCTAGAAGTTCGATCGGCCCTTCAAAGTGTGAACGTTTGGGTGAATATGATCTTCACTTTTGTGGTTGCTCATGCGTTCACGGCTATGCTGTGCCACATGAAATTTGGGATGTTCATATTTTTTGCGTTCTTCGTGGTGGTGATGAGCATTTTCATATACAAGTTTCTGCCGGAGACAAAGGGTGTGCCTATTGAAGCGATGACTCTTGTTTGGCAGAAACATCCGTATTGGGCAAAATATGTGACCCAAGATCAAACTCAAACTCACACAACTGAAACCCCACGTACCTCTTCCGATTAG

Protein sequence

MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIFSLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPETKGVPIEAMTLVWQKHPYWAKYVTQDQTQTHTTETPRTSSD

Homology

[Close]

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot
Match: Q41144 (Sugar carrier protein C OS=Ricinus communis OX=3988 GN=STC PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-51
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M I Q +V A I  KFG+DG  G+L + YA  V+LFICIY +GFAWSWGPLGWLVPSEIF
Sbjct: 360 MLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIF 419

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QSVNV VNM FTFVVA  F  MLCH+KFG+FIFF+FFV++MSIF+Y FLPET
Sbjct: 420 PLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPET 479

Query: 121 KGVPIEAMTLVWQKHPYWAKYVTQD 146
           KG+PIE M  VW++H YW++YV  +
Sbjct: 480 KGIPIEEMGQVWKQHWYWSRYVVDE 504

[Close]

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot
Match: O65413 (Sugar transport protein 12 OS=Arabidopsis thaliana OX=3702 GN=STP12 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.5e-51
Identity = 101/149 (67.79%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M ISQV V A I  KFG+DG  G L K YA  V+LFICIY A FAWSWGPLGWLVPSEIF
Sbjct: 356 MLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIF 415

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QS+ V VNMIFTF++A  F  MLCH+KFG+FIFFAFFVVVMSIF+Y FLPET
Sbjct: 416 PLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPET 475

Query: 121 KGVPIEAMTLVWQKHPYWAKYVTQDQTQT 150
           +GVPIE M  VW+ H YW+K+V  ++  T
Sbjct: 476 RGVPIEEMNRVWRSHWYWSKFVDAEKNLT 504

[Close]

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot
Match: P23586 (Sugar transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=STP1 PE=1 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-50
Identity = 97/142 (68.31%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M I Q VV A I  KFG+DG  GEL K YA  V+ FICIY AGFAWSWGPLGWLVPSEIF
Sbjct: 358 MLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIF 417

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QS+ V VNMIFTF++A  F  MLCH+KFG+F+ FAFFVVVMSIF+Y FLPET
Sbjct: 418 PLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPET 477

Query: 121 KGVPIEAMTLVWQKHPYWAKYV 143
           KG+PIE M  VW+ H YW+++V
Sbjct: 478 KGIPIEEMGQVWRSHWYWSRFV 499

[Close]

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot
Match: Q7EZD7 (Sugar transport protein MST3 OS=Oryza sativa subsp. japonica OX=39947 GN=MST3 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.5e-46
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M + QVVV  +IA KFG  G+ G++ K YA  V+LFIC+Y AGFAWSWGPLGWLVPSEIF
Sbjct: 359 MVVCQVVVGTLIAVKFGTSGI-GDIPKGYAAVVVLFICMYVAGFAWSWGPLGWLVPSEIF 418

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+R A QS+NV VNM+FTFV+A AF  MLCHMKFG+F FFA +VV+M++FI  FLPET
Sbjct: 419 PLEIRPAGQSINVSVNMLFTFVIAQAFLTMLCHMKFGLFYFFAGWVVIMTVFIALFLPET 478

Query: 121 KGVPIEAMTLVWQKHPYWAKYV 143
           K VPIE M LVW+ H +W +++
Sbjct: 479 KNVPIEEMVLVWKSHWFWRRFI 499

[Close]

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot
Match: Q6ZKF0 (Sugar transport protein MST5 OS=Oryza sativa subsp. japonica OX=39947 GN=MST5 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-45
Identity = 91/143 (63.64%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           MFISQVVV  +IA +FG+ GV GE+S+ YA  ++LFIC+Y AGFAWSWGPLGWLVPSE+F
Sbjct: 358 MFISQVVVGTLIALQFGVAGV-GEMSRSYAILLVLFICMYVAGFAWSWGPLGWLVPSEVF 417

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
           +LE+RSA QS+ V VNM+ TFV+  AF  MLCH+KFG+F FFA +++VM+ F+  FLPET
Sbjct: 418 ALEIRSAGQSIAVCVNMMLTFVIGQAFLTMLCHLKFGLFYFFAGWMLVMTTFVALFLPET 477

Query: 121 KGVPIEAMTLVWQKHPYWAKYVT 144
           KGVPIE M  VW +H +W  YVT
Sbjct: 478 KGVPIEEMNHVWSRHWFWGSYVT 499

[Close]

BLAST of CmaCh02G014830 vs. TAIR 10
Match: AT4G21480.1 (sugar transporter protein 12 )

HSP 1 Score: 201.4 bits (511), Expect = 5.3e-52
Identity = 100/142 (70.42%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M ISQV V A I  KFG+DG  G L K YA  V+LFICIY A FAWSWGPLGWLVPSEIF
Sbjct: 356 MLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIF 415

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QS+ V VNMIFTF++A  F  MLCH+KFG+FIFFAFFVVVMSIF+Y FLPET
Sbjct: 416 PLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPET 475

Query: 121 KGVPIEAMTLVWQKHPYWAKYV 143
           +GVPIE M  VW+ H YW+K+V
Sbjct: 476 RGVPIEEMNRVWRSHWYWSKFV 497

[Close]

BLAST of CmaCh02G014830 vs. TAIR 10
Match: AT1G11260.1 (sugar transporter 1 )

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-51
Identity = 97/142 (68.31%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M I Q VV A I  KFG+DG  GEL K YA  V+ FICIY AGFAWSWGPLGWLVPSEIF
Sbjct: 358 MLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIF 417

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QS+ V VNMIFTF++A  F  MLCH+KFG+F+ FAFFVVVMSIF+Y FLPET
Sbjct: 418 PLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPET 477

Query: 121 KGVPIEAMTLVWQKHPYWAKYV 143
           KG+PIE M  VW+ H YW+++V
Sbjct: 478 KGIPIEEMGQVWRSHWYWSRFV 499

[Close]

BLAST of CmaCh02G014830 vs. TAIR 10
Match: AT3G19930.1 (sugar transporter 4 )

HSP 1 Score: 179.1 bits (453), Expect = 2.8e-45
Identity = 90/158 (56.96%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M +SQ+ + AMI  KFG+ G  G + K  A  ++  ICIY AGFAWSWGPLGWLVPSEI 
Sbjct: 357 MLVSQIAIGAMIGVKFGVAG-TGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEIS 416

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA Q++NV VNM FTF+VA  F  MLCHMKFG+F FFAFFVV+M+IFIY  LPET
Sbjct: 417 PLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPET 476

Query: 121 KGVPIEAMTLVWQKHPYWAKYVTQDQTQTHTTETPRTS 159
           K VPIE M  VW+ H +W K++  +       E  + S
Sbjct: 477 KNVPIEEMNRVWKAHWFWGKFIPDEAVNMGAAEMQQKS 513

[Close]

BLAST of CmaCh02G014830 vs. TAIR 10
Match: AT5G23270.1 (sugar transporter 11 )

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 87/145 (60.00%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M ++Q+ V +MI +KFG +G  G LS   A  ++  IC+Y AGFAWSWGPLGWLVPSEI 
Sbjct: 360 MIVTQIAVGSMIGWKFGFNG-EGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEIC 419

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+RSA QS+NV VNM FTF +   F  MLCHMKFG+F FFA  V++M+IFIY  LPET
Sbjct: 420 PLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPET 479

Query: 121 KGVPIEAMTLVWQKHPYWAKYVTQD 146
           KGVPIE M  VW++H YW KY   D
Sbjct: 480 KGVPIEEMGKVWKEHRYWGKYSNND 503

[Close]

BLAST of CmaCh02G014830 vs. TAIR 10
Match: AT1G50310.1 (sugar transporter 9 )

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-43
Identity = 84/145 (57.93%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 1   MFISQVVVTAMIAYKFGLDGVAGELSKEYAGAVMLFICIYTAGFAWSWGPLGWLVPSEIF 60
           M +SQ+VV  +I  KFG  G +G L+   A  ++ FIC+Y AGFAWSWGPLGWLVPSEI 
Sbjct: 360 MIVSQIVVGTLIGMKFGTTG-SGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEIC 419

Query: 61  SLEVRSALQSVNVWVNMIFTFVVAHAFTAMLCHMKFGMFIFFAFFVVVMSIFIYKFLPET 120
            LE+R A Q++NV VNM FTF++   F  MLCHMKFG+F FF   V VM++FIY  LPET
Sbjct: 420 PLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPET 479

Query: 121 KGVPIEAMTLVWQKHPYWAKYVTQD 146
           KGVPIE M  VW++HP+W +Y+  D
Sbjct: 480 KGVPIEEMGRVWKQHPFWKRYMPDD 503

The following BLAST results are available for this feature:

BLAST of CmaCh02G014830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41144	5.7e-51	66.90	Sugar carrier protein C OS=Ricinus communis OX=3988 GN=STC PE=2 SV=1	[more]
O65413	7.5e-51	67.79	Sugar transport protein 12 OS=Arabidopsis thaliana OX=3702 GN=STP12 PE=2 SV=1	[more]
P23586	6.3e-50	68.31	Sugar transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=STP1 PE=1 SV=2	[more]
Q7EZD7	2.5e-46	64.08	Sugar transport protein MST3 OS=Oryza sativa subsp. japonica OX=39947 GN=MST3 PE...	[more]
Q6ZKF0	2.1e-45	63.64	Sugar transport protein MST5 OS=Oryza sativa subsp. japonica OX=39947 GN=MST5 PE...	[more]

BLAST of CmaCh02G014830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21480.1	5.3e-52	70.42	sugar transporter protein 12	[more]
AT1G11260.1	4.5e-51	68.31	sugar transporter 1	[more]
AT3G19930.1	2.8e-45	56.96	sugar transporter 4	[more]
AT5G23270.1	2.0e-43	60.00	sugar transporter 11	[more]
AT1G50310.1	5.9e-43	57.93	sugar transporter 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003663	Sugar/inositol transporter	PRINTS	PR00171	SUGRTRNSPORT	coord: 57..69 score: 40.45 coord: 34..55 score: 36.29
IPR036259	MFS transporter superfamily	GENE3D	1.20.1250.20	MFS general substrate transporter like domains	coord: 1..135 e-value: 5.3E-28 score: 100.0
IPR036259	MFS transporter superfamily	SUPERFAMILY	103473	MFS general substrate transporter	coord: 29..126
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 7..132 e-value: 6.8E-26 score: 91.1
None	No IPR available	PANTHER	PTHR23500	SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER	coord: 1..153
None	No IPR available	PANTHER	PTHR23500:SF477	MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED	coord: 1..153
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 1..121 score: 10.71818

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014830.1	CmaCh02G014830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015749	monosaccharide transmembrane transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0015145	monosaccharide transmembrane transporter activity
molecular_function	GO:0015293	symporter activity
molecular_function	GO:0022857	transmembrane transporter activity