CmaCh02G012330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA damage-repair/toleration protein DRT100-like
Location	Cma_Chr02: 7259669 .. 7260880 (+)
RNA-Seq Expression	CmaCh02G012330
Synteny	CmaCh02G012330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTATATATTTGCCGCTGCATTCACTTCCATGGCCGTGCTGCAGCCTGCCCCCTTTCTGACATTTTCATTTATTGCTCCACACATACCTTTAACGGATCAGAGCTTAAAATGCGCACCGTCGTTCCGTGTTTAACCATTTTACTGGTTTTGGCCGTTTGCTCGGCTGTTCATGGCTGCCCGCCTTCGGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTAAGGAGCCCTATTTGGGGATCTTTAATTCCTGGACCGGAGACGACTGTTGCAACCGATGGTACGGCGTTAGCTGTGACCCAGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGATCCGATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGTTATATTTCTCCGGCCATCTGCAAGCTTACTCGTCTCTCCGGCGTTATCATTGCTGACTGGAAGGGAATCACTGGTGAGATTCCGAGGTGTATAACTTCGTTGCCGTTCCTCAGAATTCTTGACCTCATTGGTAACCGTCTCTCCGGCTACCTTCCGGCGGATATTGGTCGGCTTCATCGACTCACGGTGCTCAACGTGGCGGATAATTTGATTTCCGGTTCAATTCCGGCTTCGCTTACGGCGCTTCCGAACTTGATGCACTTGGACCTCCGAAACAACAAAATCTCCGGTCCGTTACCCCGAAATTTCGGGAATTTGAGGATGTTGAGCCGGGCTTTGCTGAGTCGGAACCAGATCTCCGGTCCACTTCCCGCTTCCATCTCCCGGATCTATCGCTTAGCGGACCTGGATCTTTCTCTGAATCAACTAACCGGTAAAATCCCGGAATTCATGGGAAGAATGGCGGTGTTAGCCACATTGAATCTGGACGGCAACAAATTCTTCGGCAACATTCCGCCGAGTCTGTTGGTTTCGGGAATAAGCAATTTGAATTTAAGCCGAAACTACCTAACCGGAGAGCTGCCGGATGTTCTAGGGCCACGATCGTACTTCACGGTGCTGGATTTGTCTTACAACAACTTGAAGGGGCGGATTCCGAAATCGATATCAGAAGCTTCATATATCGGACACTTGGATTTGAGCCACAACCATCTGTGTGGGCCGATTCCAAGCGGGGCGCCATTCGATCATCTTGAAGCGGCATCATTTGTTTTCAACGACTGCCTTTGCGGGAAGCCACTCAAACCTTGTTAG

mRNA sequence

ATGGCGCTATATATTTGCCGCTGCATTCACTTCCATGGCCGTGCTGCAGCCTGCCCCCTTTCTGACATTTTCATTTATTGCTCCACACATACCTTTAACGGATCAGAGCTTAAAATGCGCACCGTCGTTCCGTGTTTAACCATTTTACTGGTTTTGGCCGTTTGCTCGGCTGTTCATGGCTGCCCGCCTTCGGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTAAGGAGCCCTATTTGGGGATCTTTAATTCCTGGACCGGAGACGACTGTTGCAACCGATGGTACGGCGTTAGCTGTGACCCAGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGATCCGATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGTTATATTTCTCCGGCCATCTGCAAGCTTACTCGTCTCTCCGGCGTTATCATTGCTGACTGGAAGGGAATCACTGGTGAGATTCCGAGGTGTATAACTTCGTTGCCGTTCCTCAGAATTCTTGACCTCATTGGTAACCGTCTCTCCGGCTACCTTCCGGCGGATATTGGTCGGCTTCATCGACTCACGGTGCTCAACGTGGCGGATAATTTGATTTCCGGTTCAATTCCGGCTTCGCTTACGGCGCTTCCGAACTTGATGCACTTGGACCTCCGAAACAACAAAATCTCCGGTCCGTTACCCCGAAATTTCGGGAATTTGAGGATGTTGAGCCGGGCTTTGCTGAGTCGGAACCAGATCTCCGGTCCACTTCCCGCTTCCATCTCCCGGATCTATCGCTTAGCGGACCTGGATCTTTCTCTGAATCAACTAACCGGTAAAATCCCGGAATTCATGGGAAGAATGGCGGTGTTAGCCACATTGAATCTGGACGGCAACAAATTCTTCGGCAACATTCCGCCGAGTCTGTTGGTTTCGGGAATAAGCAATTTGAATTTAAGCCGAAACTACCTAACCGGAGAGCTGCCGGATGTTCTAGGGCCACGATCGTACTTCACGGTGCTGGATTTGTCTTACAACAACTTGAAGGGGCGGATTCCGAAATCGATATCAGAAGCTTCATATATCGGACACTTGGATTTGAGCCACAACCATCTGTGTGGGCCGATTCCAAGCGGGGCGCCATTCGATCATCTTGAAGCGGCATCATTTGTTTTCAACGACTGCCTTTGCGGGAAGCCACTCAAACCTTGTTAG

Coding sequence (CDS)

ATGGCGCTATATATTTGCCGCTGCATTCACTTCCATGGCCGTGCTGCAGCCTGCCCCCTTTCTGACATTTTCATTTATTGCTCCACACATACCTTTAACGGATCAGAGCTTAAAATGCGCACCGTCGTTCCGTGTTTAACCATTTTACTGGTTTTGGCCGTTTGCTCGGCTGTTCATGGCTGCCCGCCTTCGGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGCCCTTAAGGAGCCCTATTTGGGGATCTTTAATTCCTGGACCGGAGACGACTGTTGCAACCGATGGTACGGCGTTAGCTGTGACCCAGTCACCCACCGGGTTGCCGATATTAACCTCCGGGGCGAATCTGAGGATCCGATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGTTATATTTCTCCGGCCATCTGCAAGCTTACTCGTCTCTCCGGCGTTATCATTGCTGACTGGAAGGGAATCACTGGTGAGATTCCGAGGTGTATAACTTCGTTGCCGTTCCTCAGAATTCTTGACCTCATTGGTAACCGTCTCTCCGGCTACCTTCCGGCGGATATTGGTCGGCTTCATCGACTCACGGTGCTCAACGTGGCGGATAATTTGATTTCCGGTTCAATTCCGGCTTCGCTTACGGCGCTTCCGAACTTGATGCACTTGGACCTCCGAAACAACAAAATCTCCGGTCCGTTACCCCGAAATTTCGGGAATTTGAGGATGTTGAGCCGGGCTTTGCTGAGTCGGAACCAGATCTCCGGTCCACTTCCCGCTTCCATCTCCCGGATCTATCGCTTAGCGGACCTGGATCTTTCTCTGAATCAACTAACCGGTAAAATCCCGGAATTCATGGGAAGAATGGCGGTGTTAGCCACATTGAATCTGGACGGCAACAAATTCTTCGGCAACATTCCGCCGAGTCTGTTGGTTTCGGGAATAAGCAATTTGAATTTAAGCCGAAACTACCTAACCGGAGAGCTGCCGGATGTTCTAGGGCCACGATCGTACTTCACGGTGCTGGATTTGTCTTACAACAACTTGAAGGGGCGGATTCCGAAATCGATATCAGAAGCTTCATATATCGGACACTTGGATTTGAGCCACAACCATCTGTGTGGGCCGATTCCAAGCGGGGCGCCATTCGATCATCTTGAAGCGGCATCATTTGTTTTCAACGACTGCCTTTGCGGGAAGCCACTCAAACCTTGTTAG

Protein sequence

MALYICRCIHFHGRAAACPLSDIFIYCSTHTFNGSELKMRTVVPCLTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWTGDDCCNRWYGVSCDPVTHRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITSLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRNNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFMGRMAVLATLNLDGNKFFGNIPPSLLVSGISNLNLSRNYLTGELPDVLGPRSYFTVLDLSYNNLKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCLCGKPLKPC

Homology

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BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot
Match: Q00874 (DNA damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana OX=3702 GN=DRT100 PE=2 SV=2)

HSP 1 Score: 432.2 bits (1110), Expect = 6.5e-120
Identity = 208/357 (58.26%), Postives = 268/357 (75.07%), Query Frame = 0


Query: 46  LTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWT-GDDCCNRWYGVSCDPV 105
           L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+   DCC  WYG+SCDP 
Sbjct: 12  LLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPD 71

Query: 106 THRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCI 165
           + RV DI+LRGESED IF++A R+G+M+G I PA+C LT L+ +++ADWKGITGEIP CI
Sbjct: 72  SGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCI 131

Query: 166 TSLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLR 225
           TSL  LRILDL GN+++G +PA+IG+L +L VLN+A+N +SG IPASLT+L  L HL+L 
Sbjct: 132 TSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELT 191

Query: 226 NNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFM 285
            N I+G +P +FG+L+MLSR LL RN+++G +P SIS + RLADLDLS N + G IPE+M
Sbjct: 192 ENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWM 251

Query: 286 GRMAVLATLNLDGNKFFGNIPPSLLV-SGISNLNLSRNYLTGELPDVLGPRSYFTVLDLS 345
           G M VL+ LNLD N   G IP SLL  SG+   NLSRN L G +PDV G ++Y   LDLS
Sbjct: 252 GNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLS 311

Query: 346 YNNLKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCLCGKPL 401
           +N+L GRIP S+S A ++GHLD+SHN LCG IP+G PFDHLEA SF  N CLCG PL
Sbjct: 312 HNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPL 368

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BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot
Match: F4J8G2 (Receptor-like protein 33 OS=Arabidopsis thaliana OX=3702 GN=RLP33 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-43
Identity = 118/339 (34.81%), Postives = 172/339 (50.74%), Query Frame = 0


Query: 58  VHGCPPSERAALLAFR--AALKEPYLGI-----FNSW-TGDDCCNRWYGVSCDPVTHRVA 117
           +H C   +R ALL F+    +K+P  G        SW  G DCC+ W G++CD  T  V 
Sbjct: 27  IHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCH-WDGITCDAKTGEVI 86

Query: 118 DINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITSLPF 177
           +I+L        F        +  +       LT L       +  ++G+I   I +L  
Sbjct: 87  EIDLMCSCLHGWFHSNSNLSMLQNFHF-----LTTLD----LSYNHLSGQISSSIGNLSH 146

Query: 178 LRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRNNKIS 237
           L  LDL GN  SG++P+ +G L  LT L++ DN   G IP+SL  L  L  LDL  N   
Sbjct: 147 LTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFV 206

Query: 238 GPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFMGRMAV 297
           G +P +FG+L  LS   L  N++SG LP  +  + +L+++ LS NQ TG +P  +  +++
Sbjct: 207 GEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSI 266

Query: 298 LATLNLDGNKFFGNIPPSLL-VSGISNLNLSRNYLTG--ELPDVLGPRSYFTVLDLSYNN 357
           L + +  GN F G IP SL  +  I+ + L  N L+G  E  ++  P S   VL L  NN
Sbjct: 267 LESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSP-SNLLVLQLGGNN 326

Query: 358 LKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLE 386
           L+G IP SIS    +  LDLSH ++ G +     F HL+
Sbjct: 327 LRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNI-FSHLK 353

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BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot
Match: Q9LZV7 (Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana OX=3702 GN=PXC2 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.4e-43
Identity = 105/312 (33.65%), Postives = 171/312 (54.81%), Query Frame = 0


Query: 69  LLAFRAALKEPYLGIFNSWTGDDC--CNRWYGVSCDPVTHRVADINLRGESEDPIFERAH 128
           L+ F+A L +P L   +SW  +D   CN W G +CDP T+RV+++ L   S         
Sbjct: 31  LIVFKAGLDDP-LSKLSSWNSEDYDPCN-WVGCTCDPATNRVSELRLDAFS--------- 90

Query: 129 RTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITSLPFLRILDLIGNRLSGYLP- 188
               ++G+I   + +L  L  +++++   +TG +      L  L+++D  GN LSG +P 
Sbjct: 91  ----LSGHIGRGLLRLQFLHTLVLSN-NNLTGTLNPEFPHLGSLQVVDFSGNNLSGRIPD 150

Query: 189 ADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRNNKISGPLPRNFGNLRMLSRA 248
               +   L  +++A+N ++GSIP SL+    L HL+L +N++SG LPR+   L+ L   
Sbjct: 151 GFFEQCGSLRSVSLANNKLTGSIPVSLSYCSTLTHLNLSSNQLSGRLPRDIWFLKSLKSL 210

Query: 249 LLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFMGRMAVLATLNLDGNKFFGNIP 308
             S N + G +P  +  +Y L  ++LS N  +G +P  +GR + L +L+L  N F GN+P
Sbjct: 211 DFSHNFLQGDIPDGLGGLYDLRHINLSRNWFSGDVPSDIGRCSSLKSLDLSENYFSGNLP 270

Query: 309 PSLLVSG-ISNLNLSRNYLTGELPDVLGPRSYFTVLDLSYNNLKGRIPKSISEASYIGHL 368
            S+   G  S++ L  N L GE+PD +G  +   +LDLS NN  G +P S+    ++  L
Sbjct: 271 DSMKSLGSCSSIRLRGNSLIGEIPDWIGDIATLEILDLSANNFTGTVPFSLGNLEFLKDL 326

Query: 369 DLSHNHLCGPIP 377
           +LS N L G +P
Sbjct: 331 NLSANMLAGELP 326

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BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot
Match: Q69SP5 (LRR receptor-like serine/threonine-protein kinase ER1 OS=Oryza sativa subsp. japonica OX=39947 GN=ER1 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-42
Identity = 117/333 (35.14%), Postives = 166/333 (49.85%), Query Frame = 0


Query: 46  LTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWTGDDCCNRWYGVSCDPVT 105
           L  LL++AV  A  G      + LL  + + +     +   W G D C+ W GV CD VT
Sbjct: 13  LVALLLVAVAVADDG------STLLEIKKSFRN-VDNVLYDWAGGDYCS-WRGVLCDNVT 72

Query: 106 HRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWK--GITGEIPRC 165
             VA +NL G +             + G ISPA+    RL G++  D K  G++G+IP  
Sbjct: 73  FAVAALNLSGLN-------------LGGEISPAV---GRLKGIVSIDLKSNGLSGQIPDE 132

Query: 166 ITSLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDL 225
           I     L+ LDL  N L G +P  + +L  +  L + +N + G IP++L+ LPNL  LDL
Sbjct: 133 IGDCSSLKTLDLSFNSLDGDIPFSVSKLKHIESLILKNNQLIGVIPSTLSQLPNLKILDL 192

Query: 226 RNNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEF 285
             NK+SG +PR      +L    L  N + G +   I ++  L   D+  N LTG IPE 
Sbjct: 193 AQNKLSGEIPRLIYWNEVLQYLGLRGNNLEGSISPDICQLTGLWYFDVKNNSLTGPIPET 252

Query: 286 MGRMAVLATLNLDGNKFFGNIPPSLLVSGISNLNLSRNYLTGELPDVLGPRSYFTVLDLS 345
           +G       L+L  NK  G+IP ++    ++ L+L  N  TG +P V+G      VLDLS
Sbjct: 253 IGNCTSFQVLDLSYNKLSGSIPFNIGFLQVATLSLQGNMFTGPIPSVIGLMQALAVLDLS 312

Query: 346 YNNLKGRIPKSISEASYIGHLDLSHNHLCGPIP 377
           YN L G IP  +   +Y   L +  N L GPIP
Sbjct: 313 YNQLSGPIPSILGNLTYTEKLYMQGNKLTGPIP 321

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BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot
Match: Q9LH52 (Leucine-rich repeat protein FLOR 1 OS=Arabidopsis thaliana OX=3702 GN=FLR1 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.9e-41
Identity = 117/347 (33.72%), Postives = 173/347 (49.86%), Query Frame = 0


Query: 59  HGCPPSERAALLAFRAALKEPYLGIFNSWT-GDDCCNRWYGVSCDPVTHRVADINLRGES 118
           + C  +++ ALL  + AL  P L   +SW    DCC  W GV C     RV  +++    
Sbjct: 22  YSCTENDKNALLQIKKALGNPPL--LSSWNPRTDCCTGWTGVEC--TNRRVTGLSV---- 81

Query: 119 EDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITSLPFLRILDLIG 178
                     +G ++G IS  I  L  L  +  +    +TG IPR IT L  L  L L  
Sbjct: 82  ---------TSGEVSGQISYQIGDLVDLRTLDFSYLPHLTGNIPRTITKLKNLNTLYLKH 141

Query: 179 NRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRNNKISGPLPRNFG 238
             LSG +P  I  L  LT L+++ N  +G IP SL+ +P L  + + +NK++G +P +FG
Sbjct: 142 TSLSGPIPDYISELKSLTFLDLSFNQFTGPIPGSLSQMPKLEAIQINDNKLTGSIPNSFG 201

Query: 239 N-LRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFMGRMAVLATLNLD 298
           + +  +    LS N++SG +P S+S+ Y    +DLS N   G                 D
Sbjct: 202 SFVGNVPNLYLSNNKLSGKIPESLSK-YDFNAVDLSGNGFEG-----------------D 261

Query: 299 GNKFFGNIPPSLLVSGISNLNLSRNYLTGELPDVLGPRSYFTVLDLSYNNLKGRIPKSIS 358
              FFG    ++ V      +LSRN    +L  V   RS  + LDLS N++ G+IP +++
Sbjct: 262 AFMFFGRNKTTVRV------DLSRNMFNFDLVKVKFARSIVS-LDLSQNHIYGKIPPALT 321

Query: 359 EASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCLCGKPLKPC 404
           +  ++ H ++S NHLCG IPSG      E ++F  N CLCG PLK C
Sbjct: 322 KL-HLEHFNVSDNHLCGKIPSGGLLQTFEPSAFAHNICLCGTPLKAC 325

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BLAST of CmaCh02G012330 vs. TAIR 10
Match: AT3G20820.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 550.4 bits (1417), Expect = 1.2e-156
Identity = 261/358 (72.91%), Postives = 305/358 (85.20%), Query Frame = 0


Query: 46  LTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWTGDDCCNRWYGVSCDPVT 105
           + +LL+L + S+   CPPS+R ALLAFR+AL EPYLGIFNSWTG DCC+ WYG+SCD +T
Sbjct: 5   VVVLLLLLLISSATCCPPSDRRALLAFRSALHEPYLGIFNSWTGQDCCHNWYGISCDSLT 64

Query: 106 HRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCIT 165
           HRVADINLRGESEDPIFERAHRTG+MTG+IS +IC+LTRLS + IADWKGI+GEIP+CIT
Sbjct: 65  HRVADINLRGESEDPIFERAHRTGYMTGHISASICELTRLSAITIADWKGISGEIPKCIT 124

Query: 166 SLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRN 225
            LPFLR LDLIGN++SG +P DIGRL+RL VLNVADN ISGSIP SLT L +LMHLDLRN
Sbjct: 125 RLPFLRTLDLIGNQISGGIPYDIGRLNRLAVLNVADNRISGSIPKSLTNLSSLMHLDLRN 184

Query: 226 NKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFMG 285
           N ISG +P + G L+MLSRALLS N+I+G +P S++ IYRLAD+DLS NQL G IP  +G
Sbjct: 185 NLISGVIPSDVGRLKMLSRALLSGNRITGRIPESLTNIYRLADVDLSGNQLYGTIPPSLG 244

Query: 286 RMAVLATLNLDGNKFFGNIPPSLLVSGISNLNLSRNYLTGELPDVLGPRSYFTVLDLSYN 345
           RM+VLATLNLDGNK  G IP +L+ S + NLNLSRN L G++P+  GPRSYFTVLDLSYN
Sbjct: 245 RMSVLATLNLDGNKISGEIPQTLMTSSVMNLNLSRNLLQGKIPEGFGPRSYFTVLDLSYN 304

Query: 346 NLKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCLCGKPLKPC 404
           NLKG IP+SIS AS+IGHLDLSHNHLCG IP G+PFDHLEAASF+FNDCLCGKPL+ C
Sbjct: 305 NLKGPIPRSISGASFIGHLDLSHNHLCGRIPVGSPFDHLEAASFMFNDCLCGKPLRAC 362

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BLAST of CmaCh02G012330 vs. TAIR 10
Match: AT5G12940.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 500.0 bits (1286), Expect = 1.8e-141
Identity = 237/368 (64.40%), Postives = 289/368 (78.53%), Query Frame = 0


Query: 36  ELKMRTVVPCLTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWTGDDCCNR 95
           + K   V+    +++ L + + VH C PS+RAALL FRA L EPY+G+FN+W G DCC  
Sbjct: 2   DTKKSLVILLTNVVVFLLLSTTVHSCLPSDRAALLEFRAKLNEPYIGVFNTWKGLDCCKG 61

Query: 96  WYGVSCDPVTHRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKG 155
           WYGVSCDP T RVA I LRGESEDP+F++A R+G MTG ISP+ICKLTRLSG+IIADWKG
Sbjct: 62  WYGVSCDPNTRRVAGITLRGESEDPLFQKAKRSGLMTGSISPSICKLTRLSGIIIADWKG 121

Query: 156 ITGEIPRCITSLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTAL 215
           I+G IP CI +LPFLR LDL+GN+ SG +PA+IG+L RL VLN+ADN + G IP S+T L
Sbjct: 122 ISGVIPSCIENLPFLRHLDLVGNKFSGVIPANIGKLLRLKVLNLADNHLYGVIPPSITRL 181

Query: 216 PNLMHLDLRNNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQ 275
            +L HLDLRNN ISG +PR+ G L+M+SR LLS N+ISG +P S++RIYRLADL+LS+N+
Sbjct: 182 VSLSHLDLRNNNISGVIPRDIGRLKMVSRVLLSGNKISGQIPDSLTRIYRLADLELSMNR 241

Query: 276 LTGKIPEFMGRMAVLATLNLDGNKFFGNIPPSLLVSGISNLNLSRNYLTGELPDVLGPRS 335
           LTG IP   G+M+VLATLNLDGN   G IP SLL S ISNLNLS N +TG +P+  GPRS
Sbjct: 242 LTGPIPASFGKMSVLATLNLDGNLISGMIPGSLLASSISNLNLSGNLITGSIPNTFGPRS 301

Query: 336 YFTVLDLSYNNLKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCL 395
           YFTVLDL+ N L+G IP SI+ AS+IGHLD+SHNHLCG IP G+PFDHL+A SF +N CL
Sbjct: 302 YFTVLDLANNRLQGPIPASITAASFIGHLDVSHNHLCGKIPMGSPFDHLDATSFAYNACL 361

Query: 396 CGKPLKPC 404
           CGKPL  C
Sbjct: 362 CGKPLGNC 369

[Close]

BLAST of CmaCh02G012330 vs. TAIR 10
Match: AT3G12610.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 432.2 bits (1110), Expect = 4.6e-121
Identity = 208/357 (58.26%), Postives = 268/357 (75.07%), Query Frame = 0


Query: 46  LTILLVLAVCSAVHGCPPSERAALLAFRAALKEPYLGIFNSWT-GDDCCNRWYGVSCDPV 105
           L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+   DCC  WYG+SCDP 
Sbjct: 12  LLAVVFISVISVVRCCSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPD 71

Query: 106 THRVADINLRGESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCI 165
           + RV DI+LRGESED IF++A R+G+M+G I PA+C LT L+ +++ADWKGITGEIP CI
Sbjct: 72  SGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCI 131

Query: 166 TSLPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLR 225
           TSL  LRILDL GN+++G +PA+IG+L +L VLN+A+N +SG IPASLT+L  L HL+L 
Sbjct: 132 TSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELT 191

Query: 226 NNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQLTGKIPEFM 285
            N I+G +P +FG+L+MLSR LL RN+++G +P SIS + RLADLDLS N + G IPE+M
Sbjct: 192 ENGITGVIPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWM 251

Query: 286 GRMAVLATLNLDGNKFFGNIPPSLLV-SGISNLNLSRNYLTGELPDVLGPRSYFTVLDLS 345
           G M VL+ LNLD N   G IP SLL  SG+   NLSRN L G +PDV G ++Y   LDLS
Sbjct: 252 GNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLS 311

Query: 346 YNNLKGRIPKSISEASYIGHLDLSHNHLCGPIPSGAPFDHLEAASFVFNDCLCGKPL 401
           +N+L GRIP S+S A ++GHLD+SHN LCG IP+G PFDHLEA SF  N CLCG PL
Sbjct: 312 HNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPL 368

[Close]

BLAST of CmaCh02G012330 vs. TAIR 10
Match: AT2G26380.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-53
Identity = 131/340 (38.53%), Postives = 187/340 (55.00%), Query Frame = 0


Query: 56  SAVHGCPPSERAALLAFRAALKEPYLGIFNSW-TGDDCCNRWYGVSCDPVTHRVADINLR 115
           +A   C P + A LLAF++ + +   GI ++W  G DCC+ W GVSC P  +RV  + +R
Sbjct: 24  TAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCS-WNGVSC-PNGNRVVVLTIR 83

Query: 116 GESEDPIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITSLPFLRILD 175
            ES+D          F++G ISP++ KL  L GV+  + K ITG  P  +  LP L+ + 
Sbjct: 84  IESDDAGI-------FLSGTISPSLAKLQHLEGVVFINLKNITGPFPPFLFRLPHLKYVY 143

Query: 176 LIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTALPNLMHLDLRNNKISGPLPR 235
           L   RLSG LPA+IG L+RL  L V  N   GSIP+S++ L  L +L+L  N ++G +P 
Sbjct: 144 LENTRLSGPLPANIGALNRLDTLTVKGNRFIGSIPSSISNLTRLNYLNLGGNLLTGTIPL 203

Query: 236 NFGNLRMLSR------------------------ALLSRNQISGPLPASISRIYR-LADL 295
              NL+++S                           LSRN+ SG LP SI+ +   LA L
Sbjct: 204 GIANLKLISNLNLDGNRLSGTIPDIFKSMTNLRILTLSRNRFSGKLPPSIASLAPVLAFL 263

Query: 296 DLSLNQLTGKIPEFMGRMAVLATLNLDGNKFFGNIPPSLL-VSGISNLNLSRNYLTGELP 355
           +L  N L+G IP ++ R   L TL+L  N+F G +P SL  ++ I+N+NLS N LT   P
Sbjct: 264 ELGQNNLSGSIPSYLSRFVALDTLDLSKNRFSGAVPKSLAKLTKIANINLSHNLLTNPFP 323

Query: 356 DVLGPRSYFTVLDLSYNNL-KGRIPKSISEASYIGHLDLS 368
            VL  ++Y   LDLSYN      IP+ ++ AS +G L L+
Sbjct: 324 -VLNVKNYILTLDLSYNKFHMETIPEWVTSASILGSLKLA 353

[Close]

BLAST of CmaCh02G012330 vs. TAIR 10
Match: AT5G23400.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 205.7 bits (522), Expect = 7.1e-53
Identity = 129/347 (37.18%), Postives = 182/347 (52.45%), Query Frame = 0


Query: 61  CPPSERAALLAFRAALKEPYLGIFNSWTGDDCCN-RWYGVSCDPVTHRVADINLRGESED 120
           C   +RA LL F++++ E   G+ +SW G DCCN  W GV C+P T +V  + L+    +
Sbjct: 31  CSSQDRATLLGFKSSIIEDTTGVLDSWVGKDCCNGDWEGVQCNPATGKVTGLVLQSAVNE 90

Query: 121 PIFERAHRTGFMTGYISPAICKLTRLSGVIIADWKGITGEIPRCITS------------- 180
           P       T +M G +SP++  L  L  ++I   K ITG IP   ++             
Sbjct: 91  P-------TLYMKGTLSPSLGNLRSLELLLITGNKFITGSIPNSFSNLTSLRQLILDDNS 150

Query: 181 -----------LPFLRILDLIGNRLSGYLPADIGRLHRLTVLNVADNLISGSIPASLTAL 240
                      LP L IL L GNR SG +PA  G L RLT +N+A N  SG IP +   L
Sbjct: 151 LQGNVLSSLGHLPLLEILSLAGNRFSGLVPASFGSLRRLTTMNLARNSFSGPIPVTFKNL 210

Query: 241 PNLMHLDLRNNKISGPLPRNFGNLRMLSRALLSRNQISGPLPASISRIYRLADLDLSLNQ 300
             L +LDL +N +SGP+P   G  + L+   LS N+ SG LP S+  + +L  + L  N 
Sbjct: 211 LKLENLDLSSNLLSGPIPDFIGQFQNLTNLYLSSNRFSGVLPVSVYSLRKLQTMSLERNG 270

Query: 301 LTGKIPEFMGRMAVLATLNLDGNKFFGNIPPSLLVSGISN---LNLSRNYLTGELPDVLG 360
           LTG + +    +  L +L L GNKF G+IP S  ++G+ N   LNLSRN  +  LP V+G
Sbjct: 271 LTGPLSDRFSYLKSLTSLQLSGNKFIGHIPAS--ITGLQNLWSLNLSRNLFSDPLP-VVG 330

Query: 361 PRSYFTVL--DLSYNNLK-GRIPKSISEASYIGHLDLSHNHLCGPIP 377
            R + ++L  DLSYNNL  G IP  I +   +  ++L+   L G  P
Sbjct: 331 ARGFPSLLSIDLSYNNLNLGAIPSWIRD-KQLSDINLAGCKLRGTFP 366

The following BLAST results are available for this feature:

BLAST of CmaCh02G012330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00874	6.5e-120	58.26	DNA damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana OX=3702 GN=D...	[more]
F4J8G2	2.2e-43	34.81	Receptor-like protein 33 OS=Arabidopsis thaliana OX=3702 GN=RLP33 PE=3 SV=1	[more]
Q9LZV7	8.4e-43	33.65	Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana OX...	[more]
Q69SP5	1.9e-42	35.14	LRR receptor-like serine/threonine-protein kinase ER1 OS=Oryza sativa subsp. jap...	[more]
Q9LH52	7.9e-41	33.72	Leucine-rich repeat protein FLOR 1 OS=Arabidopsis thaliana OX=3702 GN=FLR1 PE=1 ...	[more]

BLAST of CmaCh02G012330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20820.1	1.2e-156	72.91	Leucine-rich repeat (LRR) family protein	[more]
AT5G12940.1	1.8e-141	64.40	Leucine-rich repeat (LRR) family protein	[more]
AT3G12610.1	4.6e-121	58.26	Leucine-rich repeat (LRR) family protein	[more]
AT2G26380.1	1.4e-53	38.53	Leucine-rich repeat (LRR) family protein	[more]
AT5G23400.1	7.1e-53	37.18	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 193..252 e-value: 2.0E-7 score: 30.7
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 63..102 e-value: 2.2E-9 score: 37.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 59..125 e-value: 6.2E-8 score: 33.1 coord: 126..403 e-value: 1.5E-79 score: 269.8
None	No IPR available	PANTHER	PTHR48060:SF3	LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN	coord: 40..403
None	No IPR available	PANTHER	PTHR48060	DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100	coord: 40..403
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 61..402

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012330.1	CmaCh02G012330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0090353	polygalacturonase inhibitor activity
molecular_function	GO:0005515	protein binding