CmaCh01G013190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G013190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranscription factor JUNGBRUNNEN 1-like
LocationCma_Chr01: 9410941 .. 9411449 (-)
RNA-Seq ExpressionCmaCh01G013190
SyntenyCmaCh01G013190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCCCTTTTCAATATTTAGAGGACTGGATTGAATACTGTTTGATCTTTTGGTCGGTGGTATGCGTTTTAAGTAGTTAAACTATGTTTAGGTTTGCAATTTTAATTTCTTGTTTTCAGTTCGTGTATATTTAGGTAG

mRNA sequence

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Coding sequence (CDS)

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Protein sequence

MQEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQISCIFR
Homology
[Close]
BLAST of CmaCh01G013190 vs. ExPASy TrEMBL
Match: A0A6J1IXB3 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480775 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 2   QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
           +EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP               
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217

Query: 62  FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
             NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261

Query: 122 S 123
           S
Sbjct: 278 S 261

[Close]
BLAST of CmaCh01G013190 vs. ExPASy TrEMBL
Match: A0A6J1C187 (transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC111007339 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSP------------IISPIP------QNPNNNS--------- 62
           EVWTLCRIFRR+PS RKY+P            I +PIP      QNPN +S         
Sbjct: 191 EVWTLCRIFRRVPSFRKYTPSTNNPKNQNNIIINNPIPISDLTLQNPNYHSNTIFTSKSN 250

Query: 63  ----FPTLIDLETKPNP-SQQLNLFFPPKNSFFNPSLTLPYDSF-EPSSLYPSSFWNGVD 122
               F T +  ETKPNP SQQLN+        FNP+L L +  F EPSS YPSSF N VD
Sbjct: 251 TTSPFSTPLHHETKPNPNSQQLNI--------FNPNLPLSHAIFLEPSSSYPSSFRNDVD 310

[Close]
BLAST of CmaCh01G013190 vs. ExPASy TrEMBL
Match: A0A0A0L479 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
           EVWTLCRI +RIPS +KY P +          P PQNPNN++                  
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
               LI LETKP P +QL           NP+LTLP    SFE S +  SSFWNGV+G  
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294

[Close]
BLAST of CmaCh01G013190 vs. ExPASy TrEMBL
Match: A0A1S3CTC4 (transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504119 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNN-------------SFPTLI 62
           EVWTLCRIF+RIPS +KY P  +         P PQNPNN+             S P   
Sbjct: 175 EVWTLCRIFKRIPSFKKYIPTHNNNNNNNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  DL-------ETKPNPSQQLNLFFPPKNSFFNPSLTLP---YDSFEPSSLYPSSFWNGVDG 122
           D+       ETKP P +QL           NP+LTLP     SFE S +  SS WNGV+G
Sbjct: 235 DIHHLIHLHETKPKPFEQLT----------NPNLTLPSCANSSFESSPICLSSLWNGVEG 294

[Close]
BLAST of CmaCh01G013190 vs. NCBI nr
Match: XP_022981711.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/121 (84.30%), Postives = 104/121 (85.95%), Query Frame = 0 

Query: 2   QEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNS 61
           +EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP               
Sbjct: 158 EEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKP--------------- 217

Query: 62  FFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQI 121
             NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQ+
Sbjct: 218 --NPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQM 261

Query: 122 S 123
           S
Sbjct: 278 S 261

[Close]
BLAST of CmaCh01G013190 vs. NCBI nr
Match: KAG6607984.1 (Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 96/125 (76.80%), Postives = 101/125 (80.80%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
           EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS     FPTLIDLETKP           
Sbjct: 63  EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFQSHPFPTLIDLETKP----------- 122

Query: 63  PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
                 NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGGGGGGD+FTSGGW+ELQL
Sbjct: 123 ------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGGGGGGDIFTSGGWDELQL 170

[Close]
BLAST of CmaCh01G013190 vs. NCBI nr
Match: XP_023523438.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 93/125 (74.40%), Postives = 96/125 (76.80%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNS-----FPTLIDLETKPNPSQQLNLFFP 62
           EVWTLCRIFRRIPSIRKYSPI+SPIPQNPNNNS     FPTLIDLETKP           
Sbjct: 159 EVWTLCRIFRRIPSIRKYSPIMSPIPQNPNNNSFNSHPFPTLIDLETKP----------- 218

Query: 63  PKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQL 122
                 NPSLTLPY SFEPSSLYPSSFWNGVDGGG  G   GGGGGGDV TSGGW+ELQL
Sbjct: 219 ------NPSLTLPYASFEPSSLYPSSFWNGVDGGGRDG---GGGGGGDVLTSGGWDELQL 263

[Close]
BLAST of CmaCh01G013190 vs. NCBI nr
Match: KAG7037498.1 (NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 41  DLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGG 100
           DLETKP                 NPSLTLPY SFEPS LYPSSFWNG+DGGGGGGGRDGG
Sbjct: 233 DLETKP-----------------NPSLTLPYASFEPSFLYPSSFWNGIDGGGGGGGRDGG 292

Query: 101 GGGGDVFTSGGWNELQLVVQIS 123
           GGGGD+FTSGGW+ELQLVVQ+S
Sbjct: 293 GGGGDIFTSGGWDELQLVVQMS 297

[Close]
BLAST of CmaCh01G013190 vs. NCBI nr
Match: XP_038899483.1 (transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 70/154 (45.45%), Postives = 78/154 (50.65%), Query Frame = 0 

Query: 3   EVWTLCRIFRRIPSIRKYSPI------------------ISPIPQNPNN-----NSFPT- 62
           EVWTLCRIF+RIPS +KY P                   +S IPQNPNN     NS P  
Sbjct: 170 EVWTLCRIFKRIPSFKKYIPTNNNNVLKNNDDDNNNFNQVSLIPQNPNNSNIIFNSKPNT 229

Query: 63  ----------LIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPY-DSFEPSSLYPSSFWNG 121
                     LI LETKP PS                +LT PY  SFEPSS+ PSSFWNG
Sbjct: 230 KYQSQPYSNDLIHLETKPKPS----------------NLTPPYASSFEPSSICPSSFWNG 289

The following BLAST results are available for this feature:
BLAST of CmaCh01G013190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IXB33.1e-4784.30transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480... [more]
A0A6J1C1871.4e-1546.41transcription factor JUNGBRUNNEN 1 OS=Momordica charantia OX=3673 GN=LOC11100733... [more]
A0A0A0L4797.8e-1441.33NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G608170 PE=4 SV... [more]
A0A1S3CTC43.9e-1341.45transcription factor JUNGBRUNNEN 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
BLAST of CmaCh01G013190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022981711.16.5e-4784.30transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima][more]
KAG6607984.14.8e-4276.80Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_023523438.13.6e-3774.40transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo][more]
KAG7037498.11.0e-2071.95NAC domain-containing protein 73, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_038899483.11.3e-1545.45transcription factor JUNGBRUNNEN 1 isoform X1 [Benincasa hispida][more]
BLAST of CmaCh01G013190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G013190.1CmaCh01G013190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding