CmUC11G210990 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G210990
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTranslation initiation factor 1
LocationCmU531Chr11: 7670374 .. 7670830 (+)
RNA-Seq ExpressionCmUC11G210990
SyntenyCmUC11G210990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCGAATTATACACAGAACTTCCCTATTTGTAAAAAAAAAAAAGAGAAGAGGTAGGTTTCTAATACCACTCCCCCTTCATTAATTGATACTTTGAAAGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTCATAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGA

mRNA sequence

ATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGA

Coding sequence (CDS)

ATGGGCATTACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGA

Protein sequence

MGITEKLDYRESAAKFCVIYDVSSGMKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILESQTFSKLLRFNQNQRAYNLETTKQRIR
Homology
BLAST of CmUC11G210990 vs. NCBI nr
Match: YP_009326024.1 (translation initiation factor 1 [Citrullus lanatus] >YP_009348066.1 translation initiation factor 1 [Citrullus mucosospermus] >YP_009431591.1 translation initiation factor 1 [Citrullus amarus] >APW82497.1 translation initiation factor 1 [Citrullus lanatus subsp. vulgaris] >QZL38716.1 translational initiation factor 1 [Citrullus ecirrhosus] >APD52515.1 translation initiation factor 1 [Citrullus lanatus] >APW82582.1 translation initiation factor 1 [Citrullus lanatus subsp. vulgaris] >APW82667.1 translation initiation factor 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. NCBI nr
Match: QJF46419.1 (translation initiation factor 1 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 22 VSSGMKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          VSSGMKEQKR SEGLITESLTN MFWVCLDNEDPILGYVSGRI+HSFIHIL
Sbjct: 4  VSSGMKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL 54

BLAST of CmUC11G210990 vs. NCBI nr
Match: YP_009431677.1 (translation initiation factor 1 [Citrullus rehmii] >ASY96255.1 translation initiation factor 1 [Citrullus rehmii])

HSP 1 Score: 100.5 bits (249), Expect = 8.5e-18
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNG+FWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGIFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. NCBI nr
Match: QSQ72345.1 (translational initiation factor 1 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKR SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRISEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. NCBI nr
Match: YP_009420829.1 (translation initiation factor 1 [Citrullus colocynthis] >ASP44472.1 translation initiation factor 1 [Citrullus colocynthis])

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-17
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNG+FWVCLDNEDPILGYVSGRIR SFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGIFWVCLDNEDPILGYVSGRIRRSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy Swiss-Prot
Match: A5J1W9 (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKR SE LITESLTN MFWVCL+NEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy Swiss-Prot
Match: P30070 (Translation initiation factor IF-1, plastid OS=Epifagus virginiana OX=4177 GN=infA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-14
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQK   EGLITESLTNGMFWV LDN+D I+GYVSG IRHSFI IL
Sbjct: 1  MKEQKWIHEGLITESLTNGMFWVRLDNKDLIIGYVSGNIRHSFIRIL 47

BLAST of CmUC11G210990 vs. ExPASy Swiss-Prot
Match: P08698 (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=infA PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-14
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQK   EGLITESL NGMFWV LDNEDPILGYVSGRIR S I IL
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRIL 47

BLAST of CmUC11G210990 vs. ExPASy Swiss-Prot
Match: Q95GN8 (Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426 GN=infA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-14
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQK   EGLITESL NGMFWV LDNED +LGYVSGRIR SFI IL
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRIL 47

BLAST of CmUC11G210990 vs. ExPASy Swiss-Prot
Match: A1XFZ0 (Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=infA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-14
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQK   EGLITESL NGMFWV LDNED +LGYVSGRIR SFI IL
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRIL 47

BLAST of CmUC11G210990 vs. ExPASy TrEMBL
Match: A0A1P8LEB1 (Translation initiation factor 1 OS=Citrullus mucosospermus OX=519315 GN=infA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy TrEMBL
Match: A0A1P8LDB8 (Translation initiation factor 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=infA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy TrEMBL
Match: A0A343A8E5 (Translation initiation factor 1 OS=Citrullus lanatus OX=3654 GN=infA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy TrEMBL
Match: A0A249RX03 (Translation initiation factor 1 OS=Citrullus amarus OX=1567104 GN=infA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 26 MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL
Sbjct: 1  MKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 47

BLAST of CmUC11G210990 vs. ExPASy TrEMBL
Match: A0A6M3W0K7 (Translation initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 22 VSSGMKEQKRSSEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
          VSSGMKEQKR SEGLITESLTN MFWVCLDNEDPILGYVSGRI+HSFIHIL
Sbjct: 4  VSSGMKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL 54

BLAST of CmUC11G210990 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 34  EGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHIL 73
           EGL+TESL NGMF V L+N D ILGY+ G+IR +FI IL
Sbjct: 76  EGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRIL 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009326024.12.9e-18100.00translation initiation factor 1 [Citrullus lanatus] >YP_009348066.1 translation ... [more]
QJF46419.12.9e-1894.12translation initiation factor 1 [Cucumis melo][more]
YP_009431677.18.5e-1897.87translation initiation factor 1 [Citrullus rehmii] >ASY96255.1 translation initi... [more]
QSQ72345.11.5e-1797.87translational initiation factor 1 [Benincasa hispida][more]
YP_009420829.17.2e-1795.74translation initiation factor 1 [Citrullus colocynthis] >ASP44472.1 translation ... [more]
Match NameE-valueIdentityDescription
A5J1W91.8e-1891.49Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=... [more]
P300703.5e-1480.85Translation initiation factor IF-1, plastid OS=Epifagus virginiana OX=4177 GN=in... [more]
P086984.6e-1482.98Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 G... [more]
Q95GN87.8e-1480.85Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426... [more]
A1XFZ07.8e-1480.85Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=i... [more]
Match NameE-valueIdentityDescription
A0A1P8LEB11.4e-18100.00Translation initiation factor 1 OS=Citrullus mucosospermus OX=519315 GN=infA PE=... [more]
A0A1P8LDB81.4e-18100.00Translation initiation factor 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 G... [more]
A0A343A8E51.4e-18100.00Translation initiation factor 1 OS=Citrullus lanatus OX=3654 GN=infA PE=3 SV=1[more]
A0A249RX031.4e-18100.00Translation initiation factor 1 OS=Citrullus amarus OX=1567104 GN=infA PE=3 SV=1[more]
A0A6M3W0K71.4e-1894.12Translation initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G11175.12.9e-0866.67Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 22..77
e-value: 1.3E-10
score: 42.7
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 22..73
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 26..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G210990.1CmUC11G210990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003743 translation initiation factor activity