Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG
mRNA sequence
ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG
Coding sequence (CDS)
ATGAGAAGCCCATCAGGGAAGGGAAAATCACTACCACCATCTAAAATGGCTCTCAAATCCTACAAAGATTCGATAGAACATGCGTTAATTATGAGATCCTATTCAAGCATGACTTTCAAAATGTTTAGGGAAGAAGCAAAAGCTTACAGTGTGGTTTTTGAAGTACCAATCGCCAGCCAGAACAGTGAATTCTCCAGCAGGAGTAGGAAAGGGGACAAGAATTATAGAGCGGCTTTGAATTTTGAAGCCACCGAAGCCACCGGCGGCCTTGTGGAAGGCCAAAGAGGGGAAGTAAAAGTAGCTACCGATCTAATCTTTCACTTGCAAGACATAAGTGAAATTCTATCCTGGTGGGATGGGGCAGTTTGTGCCATAAACACCATCCTGCCAAGAGTTTCTTCTTTGTTGAATCCCATTCCTACACAACAACATCAAGGTGGAAAATAG
Protein sequence
MRSPSGKGKSLPPSKMALKSYKDSIEHALIMRSYSSMTFKMFREEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQGGK
Homology
BLAST of CmUC09G171610 vs. NCBI nr
Match:
OAY79989.1 (hypothetical protein ACMD2_04951, partial [Ananas comosus])
HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query: 44 EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
E A+ V +P+A+++ E R +GD + AA++ EA EA GL+ RGEV+ A D
Sbjct: 356 EAARERLVGLGLPVANEDGEVVGRRGEGDGDEEAAVDPEAAEAPRGLLRADRGEVEEAAD 415
Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQ 144
L+ HL+ +SE+ + DGAV + +LPRV LL+ IPT +
Sbjct: 416 LVLHLEVVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHE 455
BLAST of CmUC09G171610 vs. NCBI nr
Match:
KAB8096462.1 (hypothetical protein EE612_024912 [Oryza sativa] >BAS90483.1 Os04g0561950 [Oryza sativa Japonica Group])
HSP 1 Score: 68.6 bits (166), Expect = 5.3e-08
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query: 55 VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
VP+A Q+ + R +GD + RAA + + +A GGLVEG+R EV+ A DL+ L + E+
Sbjct: 65 VPVADQHGVLAGRRIEGDGDQRAAADADGAKAAGGLVEGERREVEEAADLVLGLHLVGEV 124
Query: 115 LSWWDGAVCAINTILPRVSSLLNP 139
L+ D AV A + +LPRV +L P
Sbjct: 125 LARRDRAVRAGHAVLPRVLPVLKP 148
BLAST of CmUC09G171610 vs. NCBI nr
Match:
ACR35305.1 (unknown [Zea mays])
HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 44 EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
E VV VP+A ++ R R+ D + RAA + +A E GGLVEGQR EV V D
Sbjct: 379 EHVPQVGVVGLVPVADEDGVVGGRRRERDGDLRAAEHADAAEPAGGLVEGQRWEVVVGAD 438
Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
L+ L D+ E+ + D A + +L RV LL P P ++ +
Sbjct: 439 LVLGLHDVGEVGARRDRARRPGHAVLERVPPLLEPAPGEEER 480
BLAST of CmUC09G171610 vs. NCBI nr
Match:
KAB8104148.1 (hypothetical protein EE612_036843 [Oryza sativa] >BAS99835.1 Os07g0119475 [Oryza sativa Japonica Group])
HSP 1 Score: 61.6 bits (148), Expect = 6.5e-06
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0
Query: 55 VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
VP+A + E + R D + RA ++ E EA GG V G GEV DL+ L+ + +
Sbjct: 271 VPVADEEREVAGGRRVRDGDGRALVDVERAEAAGGAVHGDGGEVDEGADLVLGLELVGVV 330
Query: 115 LSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
+ D AV A + +LPRV +LL+ IP Q+ +
Sbjct: 331 GARGDWAVGAQHAVLPRVLALLDAIPCQEER 361
BLAST of CmUC09G171610 vs. NCBI nr
Match:
GER50709.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica])
HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 0
Query: 51 VVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHL-Q 110
V VP+A + E R+ +GD + AA++ E +A G +E GEV+VA DL+ HL Q
Sbjct: 683 VALVVPVAEDDGELVGRAVEGDGDEVAAVDLEDADAAGRALEAGGGEVEVAADLVLHLCQ 742
Query: 111 DISEILS-----WWDGAVCAINTILPRVSSLLNPIPTQQ 144
++ + +S DGA A +LPRV +LLN P ++
Sbjct: 743 NVGKNISCVVGAGEDGAHGAGGAVLPRVLALLNAGPCEE 781
BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match:
A0A199VSF6 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query: 44 EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
E A+ V +P+A+++ E R +GD + AA++ EA EA GL+ RGEV+ A D
Sbjct: 356 EAARERLVGLGLPVANEDGEVVGRRGEGDGDEEAAVDPEAAEAPRGLLRADRGEVEEAAD 415
Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQ 144
L+ HL+ +SE+ + DGAV + +LPRV LL+ IPT +
Sbjct: 416 LVLHLEVVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHE 455
BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match:
A0A0P0WDG5 (Os04g0561950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0561950 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query: 55 VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
VP+A Q+ + R +GD + RAA + + +A GGLVEG+R EV+ A DL+ L + E+
Sbjct: 65 VPVADQHGVLAGRRIEGDGDQRAAADADGAKAAGGLVEGERREVEEAADLVLGLHLVGEV 124
Query: 115 LSWWDGAVCAINTILPRVSSLLNP 139
L+ D AV A + +LPRV +L P
Sbjct: 125 LARRDRAVRAGHAVLPRVLPVLKP 148
BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match:
C4J2A5 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 44 EEAKAYSVVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATD 103
E VV VP+A ++ R R+ D + RAA + +A E GGLVEGQR EV V D
Sbjct: 379 EHVPQVGVVGLVPVADEDGVVGGRRRERDGDLRAAEHADAAEPAGGLVEGQRWEVVVGAD 438
Query: 104 LIFHLQDISEILSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
L+ L D+ E+ + D A + +L RV LL P P ++ +
Sbjct: 439 LVLGLHDVGEVGARRDRARRPGHAVLERVPPLLEPAPGEEER 480
BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match:
A0A0P0X277 (Os07g0119475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0119475 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 0
Query: 55 VPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHLQDISEI 114
VP+A + E + R D + RA ++ E EA GG V G GEV DL+ L+ + +
Sbjct: 271 VPVADEEREVAGGRRVRDGDGRALVDVERAEAAGGAVHGDGGEVDEGADLVLGLELVGVV 330
Query: 115 LSWWDGAVCAINTILPRVSSLLNPIPTQQHQ 146
+ D AV A + +LPRV +LL+ IP Q+ +
Sbjct: 331 GARGDWAVGAQHAVLPRVLALLDAIPCQEER 361
BLAST of CmUC09G171610 vs. ExPASy TrEMBL
Match:
A0A5A7R004 (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4170 GN=STAS_28030 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 0
Query: 51 VVFEVPIASQNSEFSSRSRKGDKNYRAALNFEATEATGGLVEGQRGEVKVATDLIFHL-Q 110
V VP+A + E R+ +GD + AA++ E +A G +E GEV+VA DL+ HL Q
Sbjct: 683 VALVVPVAEDDGELVGRAVEGDGDEVAAVDLEDADAAGRALEAGGGEVEVAADLVLHLCQ 742
Query: 111 DISEILS-----WWDGAVCAINTILPRVSSLLNPIPTQQ 144
++ + +S DGA A +LPRV +LLN P ++
Sbjct: 743 NVGKNISCVVGAGEDGAHGAGGAVLPRVLALLNAGPCEE 781
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
OAY79989.1 | 4.4e-10 | 41.00 | hypothetical protein ACMD2_04951, partial [Ananas comosus] | [more] |
KAB8096462.1 | 5.3e-08 | 42.86 | hypothetical protein EE612_024912 [Oryza sativa] >BAS90483.1 Os04g0561950 [Oryza... | [more] |
ACR35305.1 | 1.2e-07 | 38.24 | unknown [Zea mays] | [more] |
KAB8104148.1 | 6.5e-06 | 37.36 | hypothetical protein EE612_036843 [Oryza sativa] >BAS99835.1 Os07g0119475 [Oryza... | [more] |
GER50709.1 | 4.2e-05 | 37.37 | alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A199VSF6 | 2.1e-10 | 41.00 | Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4... | [more] |
A0A0P0WDG5 | 2.6e-08 | 42.86 | Os04g0561950 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0561950 PE... | [more] |
C4J2A5 | 5.7e-08 | 38.24 | Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1 | [more] |
A0A0P0X277 | 3.1e-06 | 37.36 | Os07g0119475 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0119475 PE... | [more] |
A0A5A7R004 | 2.0e-05 | 37.37 | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4... | [more] |
Match Name | E-value | Identity | Description | |