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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA mRNA sequence ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA Coding sequence (CDS) ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA Protein sequence MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLICFHIAFVFALLL
Homology
BLAST of CmUC06G120820 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa]) HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19 Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 1 MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSL 60
MAAIHR LP+ALISLLL SESL ISS D GQ+SN RRGDK S +SL
Sbjct: 1 MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60
Query: 61 GWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICFHIAFVFALLL 109
KII KRGVRSGV G ST SSS ++ SSFFN+GSLICF+IAFVFA+ L
Sbjct: 61 AGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97
BLAST of CmUC06G120820 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus]) HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19 Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 2 AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLG 61
AAIHR LPIALISLLL SESL ISS+D QDSN R GDKDSG+SL
Sbjct: 3 AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62
Query: 62 WKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICFHIAFVFALLL 109
KI +KRGVRSGVI G ST SSS RV SSFFN+GS+ICF+IAFV A+ L
Sbjct: 63 EKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99
BLAST of CmUC06G120820 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 101.3 bits (251), Expect = 5.4e-18 Identity = 68/110 (61.82%), Postives = 77/110 (70.00%), Query Frame = 0
Query: 1 MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNS---ILRRNMVHSSEHRRGDKDSGS 60
MA I R F PI LI LLLLSES +SSAD QD S IL RN++H EH+R DKD+GS
Sbjct: 1 MAPIKRLF-PITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGS 60
Query: 61 SLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLICFHIAFVFALL 108
SL KI +KRG RS VI GHS+ SSS+RV FNI S+ICF AF FALL
Sbjct: 61 SLAEKISIKRGARSAVIGGHSSISSSSRVPP-FNIASVICFVFAFAFALL 108
BLAST of CmUC06G120820 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20 Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 1 MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSL 60
MAAIHR LP+ALISLLL SESL ISS D GQ+SN RRGDK S +SL
Sbjct: 1 MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60
Query: 61 GWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICFHIAFVFALLL 109
KII KRGVRSGV G ST SSS ++ SSFFN+GSLICF+IAFVFA+ L
Sbjct: 61 AGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97
BLAST of CmUC06G120820 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19 Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 0
Query: 2 AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLG 61
AAIHR LPIALISLLL SESL ISS+D QDSN R GDKDSG+SL
Sbjct: 3 AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62
Query: 62 WKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICFHIAFVFALLL 109
KI +KRGVRSGVI G ST SSS RV SSFFN+GS+ICF+IAFV A+ L
Sbjct: 63 EKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0035100.1 | 1.3e-19 | 63.64 | hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597... | [more] |
| KGN65176.1 | 3.7e-19 | 64.55 | hypothetical protein Csa_019975 [Cucumis sativus] | [more] |
| KAG6587814.1 | 5.4e-18 | 61.82 | hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BCG4 | 6.2e-20 | 63.64 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0LYV9 | 1.8e-19 | 64.55 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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