CmUC06G120820 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G120820
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr06: 24295817 .. 24296143 (-)
RNA-Seq Expression	CmUC06G120820
Synteny	CmUC06G120820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA

mRNA sequence

ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA

Coding sequence (CDS)

ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTAATTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA

Protein sequence

MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLICFHIAFVFALLL

Homology

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BLAST of CmUC06G120820 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSL 60
           MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60

Query: 61  GWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICFHIAFVFALLL 109
             KII KRGVRSGV  G ST SSS ++ SSFFN+GSLICF+IAFVFA+ L
Sbjct: 61  AGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

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BLAST of CmUC06G120820 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19
Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 2   AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLG 61
           AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL 
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62

Query: 62  WKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICFHIAFVFALLL 109
            KI +KRGVRSGVI G ST SSS RV  SSFFN+GS+ICF+IAFV A+ L
Sbjct: 63  EKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]

BLAST of CmUC06G120820 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-18
Identity = 68/110 (61.82%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 1   MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNS---ILRRNMVHSSEHRRGDKDSGS 60
           MA I R F PI LI LLLLSES  +SSAD  QD  S   IL RN++H  EH+R DKD+GS
Sbjct: 1   MAPIKRLF-PITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGS 60

Query: 61  SLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLICFHIAFVFALL 108
           SL  KI +KRG RS VI GHS+ SSS+RV   FNI S+ICF  AF FALL
Sbjct: 61  SLAEKISIKRGARSAVIGGHSSISSSSRVPP-FNIASVICFVFAFAFALL 108

[Close]

BLAST of CmUC06G120820 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSL 60
           MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60

Query: 61  GWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICFHIAFVFALLL 109
             KII KRGVRSGV  G ST SSS ++ SSFFN+GSLICF+IAFVFA+ L
Sbjct: 61  AGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

[Close]

BLAST of CmUC06G120820 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 2   AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLG 61
           AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL 
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62

Query: 62  WKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICFHIAFVFALLL 109
            KI +KRGVRSGVI G ST SSS RV  SSFFN+GS+ICF+IAFV A+ L
Sbjct: 63  EKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

The following BLAST results are available for this feature:

BLAST of CmUC06G120820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035100.1	1.3e-19	63.64	hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597...	[more]
KGN65176.1	3.7e-19	64.55	hypothetical protein Csa_019975 [Cucumis sativus]	[more]
KAG6587814.1	5.4e-18	61.82	hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmUC06G120820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G120820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCG4	6.2e-20	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYV9	1.8e-19	64.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1	[more]

BLAST of CmUC06G120820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G120820.1	CmUC06G120820.1	mRNA