Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAATTCATTAGTCAAAAAATCAGGAAAGGTAATATGGAACACTTTGGAGTCCGAACATCGAGGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTTCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGGTATTGAAATGTGAAAAATTCTCCCAGTGAATGTGTTGCTGAAGAAATTTCCTCCCTCCTGGAGCAACTACTGTAATCATCTTAAACATAAGAAAAATGATTTAACTTTACAGAAATTGATCAATCACATGCACATGGAAGAAGCCAATCGATAAAAAAATAAGTTGATTTCTCAAACTTTGAATTCAGTAAATGCTAACTTAATTAAATCTTTTGTTGCAAACAACGACATGTTTAAAAATAAAGGAAAGTAAAATACGAATAGTATGTCACAACAAAAGAAGGGACATTAGTTCACGGCTAGTGGTCGTAGAATTGAAAAATCCAAACTAGTGTGTTATGTGTGTGGAAAGCCAGGACATAAGTCAAATCAATTCAACCAAAGGAAAGGAAGGCCTGATAAGAAACTAGCTCCACAAAACCAACCTTGCTGAGCAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGTAACTCTACCACTGCAAAAACTTATCTTTGGAAAAACTCTTTCGTTAAGTAACGTTTTGATTTTATCTTCATTTGGTAGGAATTTGGTGTTTGGAAATCTATTGAACCGGGTTGGGATTAGAATTGTATTTGAAGTTGACAAGGTTCCTATTTCAAATTTAATGAATGTAAGTGTTTCTAATTCTGCTTATATAGTTGAATCTATTGATGTGCGACATGTAAGATTAAGTCATGTCAATTTCACATCGATAAAAAAAAAAACTTAAAGCATTAAATTTGATTAATGCATCTGAAACACATGAAATTGGTAAATGTGCTATATGTGTAGAAGCAATGTTTACCAATAAACCTTTTAAACATGTCACCACTAGATGTTCAAAATTGCTTGAATTAGTTCATACTGACTTGGCTAATTTAAAAAACACTGCTAGTAGAGGTGGGAAAAATTACTATATCACCTTTATTGATGATTTTTTAGGTATACTAAAATTTATCTTTTAAAAAAAAAGGATGAAGCATATGATATGTTTTTTAAATAAAAAGAAAAAGTAGAAAATCAATTAGATAAGCATATATCCCATGATCAAAGTAGATAATGAATAAGTTCAAAAACATCTTATAGTGATAAAATATCTGTTTTTTTTTTTTTTTTTTTTTTTCCTTCTTCTTCTGATAGTATGCATGAAATTGAACCTAGAAGAAGTAAAGGACAAAAACCTGAGAAAAAATTCAGTCCTGATTTCTTAACTACTTTTTAAGTTGAAAGGTCAATTGATATAGATAATCAATGTGCATGTATGTATTTAATAGATGAGGATTCCAAAACTTATCAAGAGGCCTTAAGTTCTGTAGACTTATGGAAAGAAGCTATTAAGAGTATATTGGGCTCTGTAACTATGAGTCAAACTTCGGACTTGGTAGATCTCCCTAAAGGAAGTAAACCAATTAGATACAAAGAATTTTCAAAAAGAAAATTAGACCTGGTGGATTAATTGAAAGATATAAGGTTAGATTAGTAGCAAAAGAGTATACACAAATGCAAGGTATTGACTATGTTGATACGTATTCTCATTAGGGGTGATAGTCGGTTCGATTTTGTCGGTTTTGGGGTTAACTAAGAACCAAACTGAACCAATCGATTTTACAAAGAAGAGATCCAAACCAATGTTTAATAAAGAACAAAACCAATGGATTGATTTGTATTTGGTTACATTTATTATAAGTTTGGTTCTTGATTTTTGATATTTTCTTTTTTTCTTCCAAATTTCAATTTTTATTTCCAATTTTGTTTTTAATTGGTTCTTTTTGCTAATTTTAAATTAAAATTAAGTCCATTTTTTTTATATAGATTGAAATTGGACATTTTTTTTCTCGGAACTTTCTAAATAAAAAACATACACACTCCATAATAATTGGTCTTTTTCTAAACAATACATATATATGCACCATAATAATTAAAACAATAAAAGATACTCAATGTCAGAGTTTATTTTTAAAGGTATATATACCATCGATTTTGATTGGTTTTTCCAATCGAATTCCTGTCCAAATCAATACTTTTTTATTTTCTCCAAATACAAACCAAGATAGTCTTCTCAAAATCTCAAAAGTTACTAAGTTGGAATCTCATTCTAACTAAGGATTCTTGTGGTTCCTAAGAATCCAGCTACACAAGAACCAAGAATGGAGAGCTCAATAAAGTCGACAGAAAAGTCTCCAGAGTCGCTATAGTCTAGGCTCTCACTCACGTTATCCGTCCTGTGACTCTATTACGTTACTTGCCCTATTAACTAGCCAGAGGCAACCATGAAAATTCATTAATTTCAACCTGCCTCAAGTTCTCTATTGTACAGCGAAACTCGCTAATAATATATATATGTTTCCCCAAGAACCAGACCTACATGCAAGAAGAATGTATATCTCCATTCGTCCTAACCAAATAGTCGAATCTATCTCTCAGCGATTAATTCTTTTCTCCACTAATAAACATTTCCCAACTAGTCTGCCCAATCGATTTTGTAAGATTGGCTAATTCAAAGGGGTTAATTTGGTTCAAAGTTGTTGGAACAAATCTTTTTCGCCTTCATCCTTTTGTTCACCCACCTTAGACGAGGTCGATCCCATGGCTATGATGGTCATTCTAGAGGTCACGCAACAACTTCCCACTTCGCCCATGAATCCTACCAATTCCTAGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTAAGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACGTTAGTAACGCAACAACTATGTTCAGAGTGTGAAAGAAGGCGAGTGCAGCCCCCACTTTCCAAAAATGAGAAATATGCATTCGGATGTAGCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG
mRNA sequence
ATGACGAATTCATTAGTCAAAAAATCAGGAAAGGTAATATGGAACACTTTGGAGTCCGAACATCGAGGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTTCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTAAGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG
Coding sequence (CDS)
ATGACGAATTCATTAGTCAAAAAATCAGGAAAGGTAATATGGAACACTTTGGAGTCCGAACATCGAGGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTTCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTAAGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG
Protein sequence
MTNSLVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSEDDVIVVVVVEANLLENKSDWILDIGASRPFCSNRDLFHKFEDSTNREFIFMGPFNPYQNPNQQLRAAQEALPEAPAPAEVLNLDLHPLRHFEGKFTPNKNLSHDLEISTEMDVKPLHEWMEQIKDNPEIW
Homology
BLAST of CmUC06G116020 vs. NCBI nr
Match:
KAA0026033.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 143.3 bits (360), Expect = 2.2e-30
Identity = 73/138 (52.90%), Postives = 93/138 (67.39%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+HEYENLVANVLSE
Sbjct: 110 VVQKSAKDIWSTLESRYEGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSE 169
Query: 65 --------------------------DDVIVVVVVEANLLENKSDWILDIGASRPFCSNR 117
D I+ +VEANL+ENK+DWILD GASR FC+NR
Sbjct: 170 GVKMCEILQANVLLEKFPPSWNDYQQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNR 229
BLAST of CmUC06G116020 vs. NCBI nr
Match:
XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])
HSP 1 Score: 136.3 bits (342), Expect = 2.7e-28
Identity = 82/192 (42.71%), Postives = 96/192 (50.00%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS KVIW+TLES + GDDAG +KYVV K+LQFQM DDK ++DQVHEYENLVA+VLSE
Sbjct: 34 VVQKSAKVIWDTLESRYGGDDAGRRKYVVGKWLQFQMSDDKPVMDQVHEYENLVASVLSE 93
Query: 65 ------------------------------------------------------------ 117
Sbjct: 94 GMKMCEMLQANVFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQC 153
BLAST of CmUC06G116020 vs. NCBI nr
Match:
KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 135.2 bits (339), Expect = 6.1e-28
Identity = 75/162 (46.30%), Postives = 92/162 (56.79%), Query Frame = 0
Query: 6 VKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE- 65
V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK I++Q+HEYENLVANVLSE
Sbjct: 115 VQKSAKEIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEG 174
Query: 66 --------------------------------------------------DDVIVVVVVE 117
D I+ +VE
Sbjct: 175 MKMCEILEANILLEKFPPSWNDYRHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVE 234
BLAST of CmUC06G116020 vs. NCBI nr
Match:
KAA0049696.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 125.2 bits (313), Expect = 6.3e-25
Identity = 74/182 (40.66%), Postives = 91/182 (50.00%), Query Frame = 0
Query: 7 KKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE-- 66
KKS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+HEYEN VANVLSE
Sbjct: 76 KKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENPVANVLSEGM 135
Query: 67 ------------------------------------------------------------ 117
Sbjct: 136 KMCEILQENVLLEKFPPSWNDYRSHLKHKKKDLKLQELISHMRTEEANRLKDKKGRPSQK 195
BLAST of CmUC06G116020 vs. NCBI nr
Match:
KAA0049764.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 124.8 bits (312), Expect = 8.2e-25
Identity = 73/184 (39.67%), Postives = 92/184 (50.00%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+H+YENLVANVLSE
Sbjct: 10 VVQKSAKDIWSTLESRYGGDDAGQKKYVVGKWLQFQMTDDKPVVEQIHKYENLVANVLSE 69
Query: 65 ------------------------------------------------------------ 117
Sbjct: 70 GMKMCEILQANVLLEKFRPSWNDCRNHLKHKKKDLKLQELISHMRTEEANRLKDKKGRPS 129
BLAST of CmUC06G116020 vs. ExPASy TrEMBL
Match:
A0A5A7SN16 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00180 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 73/138 (52.90%), Postives = 93/138 (67.39%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+HEYENLVANVLSE
Sbjct: 110 VVQKSAKDIWSTLESRYEGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSE 169
Query: 65 --------------------------DDVIVVVVVEANLLENKSDWILDIGASRPFCSNR 117
D I+ +VEANL+ENK+DWILD GASR FC+NR
Sbjct: 170 GVKMCEILQANVLLEKFPPSWNDYQQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNR 229
BLAST of CmUC06G116020 vs. ExPASy TrEMBL
Match:
A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 82/192 (42.71%), Postives = 96/192 (50.00%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS KVIW+TLES + GDDAG +KYVV K+LQFQM DDK ++DQVHEYENLVA+VLSE
Sbjct: 34 VVQKSAKVIWDTLESRYGGDDAGRRKYVVGKWLQFQMSDDKPVMDQVHEYENLVASVLSE 93
Query: 65 ------------------------------------------------------------ 117
Sbjct: 94 GMKMCEMLQANVFKNKGKTIVRDRAQKNKGLQPKNTGGRIEKSKLVCYVCEKPEHKSYQC 153
BLAST of CmUC06G116020 vs. ExPASy TrEMBL
Match:
A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.9e-28
Identity = 75/162 (46.30%), Postives = 92/162 (56.79%), Query Frame = 0
Query: 6 VKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE- 65
V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK I++Q+HEYENLVANVLSE
Sbjct: 115 VQKSAKEIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEG 174
Query: 66 --------------------------------------------------DDVIVVVVVE 117
D I+ +VE
Sbjct: 175 MKMCEILEANILLEKFPPSWNDYRHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVE 234
BLAST of CmUC06G116020 vs. ExPASy TrEMBL
Match:
A0A5A7U6B5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00400 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 74/182 (40.66%), Postives = 91/182 (50.00%), Query Frame = 0
Query: 7 KKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE-- 66
KKS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+HEYEN VANVLSE
Sbjct: 76 KKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENPVANVLSEGM 135
Query: 67 ------------------------------------------------------------ 117
Sbjct: 136 KMCEILQENVLLEKFPPSWNDYRSHLKHKKKDLKLQELISHMRTEEANRLKDKKGRPSQK 195
BLAST of CmUC06G116020 vs. ExPASy TrEMBL
Match:
A0A5A7U3D3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001170 PE=4 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 4.0e-25
Identity = 73/184 (39.67%), Postives = 92/184 (50.00%), Query Frame = 0
Query: 5 LVKKSGKVIWNTLESEHRGDDAGNKKYVVRKFLQFQMMDDKLILDQVHEYENLVANVLSE 64
+V+KS K IW+TLES + GDDAG KKYVV K+LQFQM DDK +++Q+H+YENLVANVLSE
Sbjct: 10 VVQKSAKDIWSTLESRYGGDDAGQKKYVVGKWLQFQMTDDKPVVEQIHKYENLVANVLSE 69
Query: 65 ------------------------------------------------------------ 117
Sbjct: 70 GMKMCEILQANVLLEKFRPSWNDCRNHLKHKKKDLKLQELISHMRTEEANRLKDKKGRPS 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0026033.1 | 2.2e-30 | 52.90 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| XP_022153695.1 | 2.7e-28 | 42.71 | uncharacterized protein LOC111021147 [Momordica charantia] | [more] |
| KAA0048277.1 | 6.1e-28 | 46.30 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0049696.1 | 6.3e-25 | 40.66 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0049764.1 | 8.2e-25 | 39.67 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SN16 | 1.1e-30 | 52.90 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A6J1DHJ4 | 1.3e-28 | 42.71 | uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
| A0A5A7U214 | 2.9e-28 | 46.30 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7U6B5 | 3.0e-25 | 40.66 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7U3D3 | 4.0e-25 | 39.67 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
