CmUC06G115640 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115640
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	S-protein homolog
Location	CmU531Chr06: 8993450 .. 8993851 (+)
RNA-Seq Expression	CmUC06G115640
Synteny	CmUC06G115640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCATTCTCAACATTTGCACTATGCCTTTTGATATTAGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGTTAGTTACGCCTTTAATTTTTTACCAAACTTCTTTAGTACCTTCCAATGGCCTGGTTGGTCACATTACTTCGATATTTACAAGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTTTGTGGATTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

mRNA sequence

ATGGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTTTGTGGATTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

Coding sequence (CDS)

ATGGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTTTGTGGATTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

Protein sequence

MVFFTSLFTIEGKPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQLPPLDAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTWLVK

Homology

[Close]

BLAST of CmUC06G115640 vs. NCBI nr
Match: XP_008465559.1 (PREDICTED: pumilio homolog 15-like, partial [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 66/122 (54.10%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 7   LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL------------- 66
           LFTIEGKPFQ+PLV VNITNAL  K +LTVHCKS DDD G HQL PL             
Sbjct: 1   LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 60

Query: 67  ---------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTWL 93
                                D++DRD CN  LCLWIVGEQG+CMF+  TKKYD CYTW+
Sbjct: 61  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCN-GLCLWIVGEQGVCMFHYVTKKYDFCYTWV 120

[Close]

BLAST of CmUC06G115640 vs. NCBI nr
Match: KGN61530.1 (hypothetical protein Csa_006387 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 61/125 (48.80%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 2   VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL------- 61
           + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G HQL  L       
Sbjct: 56  LLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNF 115

Query: 62  ---------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYD 90
                                      D +DR  CN+ LCLWIVGEQG+CMF+  T  YD
Sbjct: 116 RPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGEQGLCMFDYKTNAYD 175

[Close]

BLAST of CmUC06G115640 vs. NCBI nr
Match: KAA0059530.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 54/105 (51.43%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 6   SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL------------ 65
           +LFT EGKPFQ+PLV VNITNAL  K +LTVHCKSADDD G HQL PL            
Sbjct: 78  NLFTTEGKPFQNPLVTVNITNALTHKDQLTVHCKSADDDLGVHQLQPLGGYAFTFRPNFI 137

Query: 66  ----------------------DAKDRDCCNEPLCLWIVGEQGIC 75
                                 D++DRD CN+ LCLWIVGEQG+C
Sbjct: 138 GTTLFYCTFQWLGWSYNFDIYKDSRDRDRCND-LCLWIVGEQGVC 181

[Close]

BLAST of CmUC06G115640 vs. NCBI nr
Match: XP_022138779.1 (S-protein homolog 5 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 2.8e-15
Identity = 48/109 (44.04%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 17  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------- 76
           S   +VNITN L+   +LTVHCKS DDD GFHQLPPL                       
Sbjct: 30  SARASVNITNILESHQQLTVHCKSKDDDLGFHQLPPLISYAFDFRPNVWISTLFFCSFQW 89

Query: 77  -----------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                        +D D C   LCLWIVGE+G+C++N+ T KYDICYTW
Sbjct: 90  PGSFHYFEIYNQKRDEDLCT--LCLWIVGEKGLCLYNSKTLKYDICYTW 136

[Close]

BLAST of CmUC06G115640 vs. NCBI nr
Match: XP_008460739.1 (PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-14
Identity = 44/107 (41.12%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 20  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL------------------------- 79
           + VNITN + G   +LTVHCKS DDD G H+LP L                         
Sbjct: 1   MTVNITNEISGVNNQLTVHCKSGDDDLGVHKLPHLVSYTFTFRPNFWGSTLFYCKFQWSS 60

Query: 80  ---------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                    D++D   CN+ LCLWI+ E+GICMFN  TK YD CY W
Sbjct: 61  WLHYFDIYKDSRDNLRCNQTLCLWIISEKGICMFNYDTKNYDYCYAW 107

[Close]

BLAST of CmUC06G115640 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 30/107 (28.04%), Postives = 40/107 (37.38%), Query Frame = 0


Query: 22  VNITNALKGKLTV--HCKSADDDFGFHQLPP----------------------------- 81
           V I N L  +LT+  HCKS DDD G   L P                             
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 82  --------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                    D+   + C    C+W +   G C FN+ TK++D+CY W
Sbjct: 110 SFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of CmUC06G115640 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-05
Identity = 34/109 (31.19%), Postives = 41/109 (37.61%), Query Frame = 0


Query: 22  VNITNALKGKLT--VHCKSADDDFGFHQLPP----------------------------- 81
           V ITN L   LT  +HCKSADDD G   L P                             
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 82  ---LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
              +   DRD       C N   C+W +  QG CMF+     ++ICY W
Sbjct: 99  RFDIYDDDRDGVRSHISCIN---CIWDISIQGPCMFSESDHAFNICYDW 144

[Close]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL
Match: A0A1S3CP53 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103503190 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.5e-26
Identity = 66/122 (54.10%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 7   LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL------------- 66
           LFTIEGKPFQ+PLV VNITNAL  K +LTVHCKS DDD G HQL PL             
Sbjct: 1   LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 60

Query: 67  ---------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTWL 93
                                D++DRD CN  LCLWIVGEQG+CMF+  TKKYD CYTW+
Sbjct: 61  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCN-GLCLWIVGEQGVCMFHYVTKKYDFCYTWV 120

[Close]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL
Match: A0A0A0LI28 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G162130 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 61/125 (48.80%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 2   VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL------- 61
           + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G HQL  L       
Sbjct: 56  LLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNF 115

Query: 62  ---------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYD 90
                                      D +DR  CN+ LCLWIVGEQG+CMF+  T  YD
Sbjct: 116 RPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGEQGLCMFDYKTNAYD 175

[Close]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL
Match: A0A5A7UWN1 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00420 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 54/105 (51.43%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 6   SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL------------ 65
           +LFT EGKPFQ+PLV VNITNAL  K +LTVHCKSADDD G HQL PL            
Sbjct: 78  NLFTTEGKPFQNPLVTVNITNALTHKDQLTVHCKSADDDLGVHQLQPLGGYAFTFRPNFI 137

Query: 66  ----------------------DAKDRDCCNEPLCLWIVGEQGIC 75
                                 D++DRD CN+ LCLWIVGEQG+C
Sbjct: 138 GTTLFYCTFQWLGWSYNFDIYKDSRDRDRCND-LCLWIVGEQGVC 181

[Close]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL
Match: A0A6J1CB24 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009858 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 48/109 (44.04%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 17  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------- 76
           S   +VNITN L+   +LTVHCKS DDD GFHQLPPL                       
Sbjct: 30  SARASVNITNILESHQQLTVHCKSKDDDLGFHQLPPLISYAFDFRPNVWISTLFFCSFQW 89

Query: 77  -----------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                        +D D C   LCLWIVGE+G+C++N+ T KYDICYTW
Sbjct: 90  PGSFHYFEIYNQKRDEDLCT--LCLWIVGEKGLCLYNSKTLKYDICYTW 136

[Close]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL
Match: A0A1S3CDK4 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499501 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 44/107 (41.12%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 20  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL------------------------- 79
           + VNITN + G   +LTVHCKS DDD G H+LP L                         
Sbjct: 1   MTVNITNEISGVNNQLTVHCKSGDDDLGVHKLPHLVSYTFTFRPNFWGSTLFYCKFQWSS 60

Query: 80  ---------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                    D++D   CN+ LCLWI+ E+GICMFN  TK YD CY W
Sbjct: 61  WLHYFDIYKDSRDNLRCNQTLCLWIISEKGICMFNYDTKNYDYCYAW 107

[Close]

BLAST of CmUC06G115640 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-07
Identity = 30/107 (28.04%), Postives = 40/107 (37.38%), Query Frame = 0


Query: 22  VNITNALKGKLTV--HCKSADDDFGFHQLPP----------------------------- 81
           V I N L  +LT+  HCKS DDD G   L P                             
Sbjct: 50  VEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESH 109

Query: 82  --------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
                    D+   + C    C+W +   G C FN+ TK++D+CY W
Sbjct: 110 SFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of CmUC06G115640 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 34/109 (31.19%), Postives = 41/109 (37.61%), Query Frame = 0


Query: 22  VNITNALKGKLT--VHCKSADDDFGFHQLPP----------------------------- 81
           V ITN L   LT  +HCKSADDD G   L P                             
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 82  ---LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGTKKYDICYTW 90
              +   DRD       C N   C+W +  QG CMF+     ++ICY W
Sbjct: 99  RFDIYDDDRDGVRSHISCIN---CIWDISIQGPCMFSESDHAFNICYDW 144

[Close]

BLAST of CmUC06G115640 vs. TAIR 10
Match: AT5G12070.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 43.9 bits (102), Expect = 8.1e-05
Identity = 30/107 (28.04%), Postives = 39/107 (36.45%), Query Frame = 0


Query: 22  VNITNAL--KGKLTVHCKSADDDFGFHQLPP----------------------------- 81
           V ITN L     L +HCKSADDD G   L P                             
Sbjct: 40  VTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQS 99

Query: 82  ----LDAKDRDCCNEPL----CLWIVGEQGICMFNNGTKKYDICYTW 90
               +   DRD     +    C+W +G+ G C F+     ++ICY W
Sbjct: 100 KWFNIYDDDRDGVRMGIPCIYCIWDIGKYGPCRFSEIDDAFNICYDW 146

[Close]

BLAST of CmUC06G115640 vs. TAIR 10
Match: AT5G06020.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 21/50 (42.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 1  MVFFT--SLFTIEGKPF--QSPLVNVNITNALKGKLTVHCKSADDDFGFH 47
          M+F T    F  +G+PF  + PL  + + N     L +HCKS DDD GFH
Sbjct: 24 MIFVTCYETFQQDGEPFPIRGPLTRITVKNNNDYLLGIHCKSKDDDLGFH 73

[Close]

BLAST of CmUC06G115640 vs. TAIR 10
Match: AT5G06030.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 40.8 bits (94), Expect = 6.9e-04
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 0


Query: 13 KPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQL 49
          +PF+  L  V I N     L +HCKS DDD GFH L
Sbjct: 39 EPFRGHLTRVTIQNYNDYLLAIHCKSRDDDLGFHIL 74

The following BLAST results are available for this feature:

BLAST of CmUC06G115640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465559.1	1.7e-25	54.10	PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]	[more]
KGN61530.1	1.3e-23	48.80	hypothetical protein Csa_006387 [Cucumis sativus]	[more]
KAA0059530.1	3.0e-17	51.43	pumilio-like protein 15-like [Cucumis melo var. makuwa]	[more]
XP_022138779.1	2.8e-15	44.04	S-protein homolog 5 [Momordica charantia]	[more]
XP_008460739.1	5.3e-14	41.12	PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo]	[more]

BLAST of CmUC06G115640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLQ5	4.2e-06	28.04	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
Q9FMQ4	3.6e-05	31.19	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]

BLAST of CmUC06G115640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CP53	8.5e-26	54.10	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103503190 PE=3 SV=1	[more]
A0A0A0LI28	6.1e-24	48.80	S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G162130 PE=3 SV=1	[more]
A0A5A7UWN1	1.4e-17	51.43	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00...	[more]
A0A6J1CB24	1.4e-15	44.04	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111009858 PE=3 SV=1	[more]
A0A1S3CDK4	2.6e-14	41.12	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103499501 PE=3 SV=1	[more]

BLAST of CmUC06G115640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16195.1	3.0e-07	28.04	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	2.5e-06	31.19	Plant self-incompatibility protein S1 family	[more]
AT5G12070.1	8.1e-05	28.04	Plant self-incompatibility protein S1 family	[more]
AT5G06020.1	4.0e-04	42.00	Plant self-incompatibility protein S1 family	[more]
AT5G06030.1	6.9e-04	50.00	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 21..50 e-value: 2.1E-5 score: 25.0 coord: 54..89 e-value: 8.5E-6 score: 26.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115640.1	CmUC06G115640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity