CmUC05G107930 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC05G107930
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	CmU531Chr05: 35829771 .. 35843372 (+)
RNA-Seq Expression	CmUC05G107930
Synteny	CmUC05G107930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGCAGCTATTGGAACAAACTCAATCCAAGAGGTACCTCTCACTTTAGCTCTAAGATAATTTCGAGCATACATTACCATATGTATACATTAATCTTGAATGTTCTTTGACATAAACACTGTTTGCTGGTCAATAATGCATGCGAATATTAACATGGAAAGCATATGGCTATGCTCATAATAGTTCAAGGTTCAATGCATGCTATGACATTCACAATCAGTGCTATCTTCTAGTTTCCAGCAGTAGCTTGGTTTTCAACTTTTCCAGTTTAGACACTGGTTTCAATGACGTTTAATCAATGTCATACTATACTTTTTTTTAAATTTTAGCGTCAATCGCAAAAAACCACTCCTAAAGTATGGTGGTTGTTGCAATTACACTCCCTCAAACTTTCAATTGTAAAAATTAGGCCCCGAAACTTCTAAAAGTGTTTAAATTAGACCCTCGGGCTTACAATAATTGTAGAAATTGGACCTACAAATGGTAAAGATTGAATCCGTAAATTTATACAAATGTTACAATTTATGGAATTATATAAGATTGAATGTCTAATTTGACCAAATGTTATTATTTATATAAGTTTGAGGATTTCATTTTTAAATTTGAAATTTTAATGGTATAATTGCAACTACCATACTTTATAGGTGGTTTTTGCAACTTGTCCAAAATTTTATTTTTGGTCTTTGCTAATTTCTCGAGTAATTATCCATTAGCATATTTTGTGGGCTCATCATTCGGCACTTATTAGCTGGAATTTTTCCGAGGACTTTTGTATTTGTTTGTCTGGAAATTACGATTTAGCTACAGTACCAAAATCAGAGTTGCCCTTCAGCTTTAATTGCTTAGGTTTCAGATTTTGTGAGTAGATAAGATTATTTTGCTGTCTTGGTTTGTTTACCTTGTTATCAATATCGCCAAAAACTAGAGAAAAGGGGGAAGGTTTTGTTTCAATGGGATTTCTTCTAAATTCCTTAAATAGAAATAGTGAACATTGATGGTAAAAAAATTAATTAAAAAAAAAAGTATTGATGATAAATCTATTGTTGAATTAGGGTTTTGACCTCATCTGTTGTTCATTTTCTCATTTTCATCTTAGAAAGTTCGTAATTTTCTATTTTGGTTTAACATCTAAGGACTTTTTTTTTTCCACCCTCTTAGCTCTTAAATTTAGAATCTTAATTTAAGCCCTTCCACTCTTATTAAACGGTAGAACTAGTCTTATCATACAAACTTTATTCCAAATTATTGAAAGAAAAATGAGACATTTGAAATTCAAATGATCATGCATAAGGTAGGGGACTAACTGTGAATTGTGCCTCATACAAGTTGAGTCAAAATCAAATCTTTAATAGTTCAAGTCTTGTTTGTTAATTATTTTATTTTTTGTTTTTGTTTTTGTTTTTGAAAATTAAGTCTATTCTTCTCATTTCTTACATTGATTTGTATCTCTCTTAAAGTACAATAGTCGATTTCTTTGTCAAATTCCAAAAAGAAAAGTTTTTAAAAGTTATTTTTTTTAGTTTTCAAATTTTAGCTTGGTTTTTTAAACCATTAGTAAAAAGTAGATAACAAAGAAATAAAGTGAAAGTAGTGTCTATAGGCTTAATTTTCAAAAGAAAAACATAAAATAAAATGGTTATAAAACAAGGCTTTAGTAATCGAACAAAATGTTCATATAAAAAAGTTAAAGTTTTAGAAAGATCAGATTCCAAAATGAAAAAGTAGGCAATTGTCTAGGAATGGAAATAATTTATATACATATACTCAAAGTTTCAAAATTTTTAAAAATATAGTTAAGGTTGCATATAGACAATTATGCTTAAAATGCTATTTTAGTTTGAATCTTGGATTTAATTTCATTTTAGGTTCTATACTTTAAAAGGTTTAAACTTGTTTTTTACTTTCAATAAATCTTCAAAATAATTTTTGCTATTGATTTACTTTTGATTCATTTAATTTATAAATTTTGGAAACATATTTATAAGGTACTTTTTCTTACCTAAAAATAATATTTAGGTTAAAATACTATTTGAGCCCTAGATTGAGTTCAAATTTAGTCGATCTACATTCAAATATCTAATTTTATCTTTGTATTCTTAATAAATCTTAAATTTAATCTATTGAAGGTAATTTTTATTAAAATATTTAATATTACATTTGTAGCATAGAAAAGTTATTTGTTGTTTTGTAAAATATATTATAGTTTTCTAATATCGGTTCAAAGCACTAAGTAGTTGTGTAGTTTAATTTGACCTCTTCCTTTCCAAATGATTCTTTGAAATTATTTGGTACCCGTCAAATCGGGGAAATAGATTATTTGAAAGGAACTCTATTGTCGTTTTTGGAACACGAATTTCATTGTTCAAATAAAAATCAAAACAAGAAGTTGGCTGTCTGTTTGAGAGAGAAAAAGGGGGAAAAATCTGTACATGAACTTTATTTCTTTAGTGAGTATCCATAAGTTAGTAAGTTCGGTGTCTTTTTAATTAATTAATTAATGTTTATTTTTTTGCAAGTGTCCAACAAAAAGAAGGGAAAAAAACCTCTGGGTTTTCCATGGTGTGGCATGCTTAACACAAAAATGTGATTGTATATAAAACTTTTTTCACAATTGTTTTCAGTTGAGCTTTCAGTATAAACTTAACTTCAAAATAACGTTTAAGTGTTCTTAAAAACCACCAAAATCATATTTTAAGTGCACAACAAGTTGTAAATAGGCTACACTCTTGTTTAAACACAGTTGTTTGAAACAATTCTATAAAGTGTACAACACAGAACAAACGTGTGTGAAGAGTACCTTAAATTTTCCTTAAGCTTTCAATTTCTTAAAACCAAAATATTAAGGTCATGTTTGATTTATTTTTCTTTTCAAATTGTCCTATTTTCTTTTCATTTCTTTAAAGAAACATTTGAATTCCGAACCACATCTCAAAAACATAAGTAAAGTTTTTAATTTTTTTAAAAAAAAAATATTCAAAACTTCACTTAGCTTTTGAAAATACTTTTAGGAAGTAGATGAAAAAATTATGGATAGAGTAGTATTTATGAGCTTAACTTATATTAACACTACTTTTACCCATGTGTGTTTCTTTGTTTTGTTATCTACTTTTTAGAGATATTTTCATAATCCAATTTTTCAATTTTTTTTAGTAAGTAGTTTTTAAAGTTTTGTTTTTGTTTTTGGAATTTGATTAAGAATTCACAAGTTTCTTTAAGAAAGATAACAATGGTATTTAGGAAATCACATGAAAGCATGCATATATTTCAAAAGCATAAAACTAAAAACGTAACATTTATCAAACAAGATCTTAATCTTTTATTTTTGGAATTTTTTATTAAAAAAGATTTATAAATACCACTTCCACCTATAGGGTTATTTGTTTTTTTTTTTTTTTTTCAATTTTTTCAGCTAGTTAGCCAAATATTGAAATCTATACAAAAGTAGTTTTTGAAAACATTTTTTCTTCTTTAAAACTTAACTAAGGATTCAATTTTGAAATGTATCTCAAAAAGATTATGAGAAAGTTTTTTTAAAGCCTAATTGTTATCAAACAAGGCCAAATCATTGTGCAACTTTGTTGATAGGTGCAATTTTTTAGAGGGGAAAAAAGGTAAAGCATGGTATGTAGTTGTAGTAGGATTGGTTAAGATGAAAAGAGAAAGAAGGAACAAGACTGGTGGTGGGATATGGAAGAGAAGACCTAAAGAGTTGGAGAAGTAGAATAGGTGGTTAGTGTTAGTACATATTCCCTATTACATTTCAGCCTTAGCCCATTGGCATTTTGCTGTTGAAAATTGAAAATATGGTTGGTTTGGACTATTCCAATCCTAACCCACTTTTTTTTACCTTTGAATTTACTTCTTTATGCCTATTCCTTAGCTTTCTCCTAATTTTAACCCTACTCCCCTCTCCTCTCTTTCTTTTTCTATCACTATCTCCACCTAGCTAGTTTCATACCTGTTTTCTTTTCTTGCAATCTTATTCCTATTGATCTTGACATTTAGTCTATAATGATGTTCTCATTTTTGTTCTTTCATTTTTACTTCCGTTTTCTCCTCATTTTCAACATTGTTGATCCAAACGAAAGGTTTGGAGAGAGAAGAGCTTGATGAAAATGACCTACTGAGAGAGAGAATATCTTTCTTGTTGCCTAGTTATCTTTGTTATCATGTTGCATCATTATTTTTGTAAAGATGTGTTTTCTTACCATTTAGAAGTAAAAAGTAGCATAATTGTTATTATTGGATCTTAACAACTGATAATATATTCATCTTTTTCAATTAGAAAGGTTATTCAAAAGTTTGGAGAAATAGCACTTAAACCACTTCCTTCTCAAGATGTACATATATATGAATTTATGATTGTATTTTTTCAACCACCGAACTAAATTAATAATTTGATCTTCAAAAAACTAAATTATTGATATTTTCATAAAATACTTTTACTAGCTTCAAAACTAATTCAAATTGGGATTACTTTCCCATCAATTAATCATTATTTATAGAATTATATTTTATATTATACCAATTTGAAGATGTGTGTATATTAATTTCATTATTGCTCCTAAAATTCTTTGTCGCAATAAATGTTCTACACCCGTCTTCACCGGGGGATACGGTGGGGTCCTTTTATTATTATTATTATTATGAAAAATATATTTTTTTCCGTAAAAAAGAAAGACTTGTAGGCTAAGAAGTAGATATGATTGAACCTTATGGTTAAAAAAAACTAATGTAAAGAAAATTATTCCTCTGACAAAGTGTATCAGATTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAGGGCTAACTAAAAGAAAAAAATTGCATTTAAGATTAGATAGGGAGAAATACGGTTAACTAGTATGAATTAGTAGAATGTTATGTTCTAATGTACTTATAGATACAGTTTCTATCCATTAAATTAGTTGTATTATGTTTTTATGATCTTATCAAATCAAATTAATCTAATTTCAAAAATGTGATGTAGGTTAGTGTTGGAGCCTTCTTCATTTGAAACTAATAAATGTTGGGTGGATAGGGACGAGGTAGGATGGGGTTAAGCCTTTGTTAACAAATTGAAGTCTAAACATAAATACGATGGTTTTTTCTTTTTTTTGGGAAAGAGGTAAAAAAAGTATATTCAAAGGTCAAAACATTTTTGTCAACCTCGATATTTTTACTTGATTATAAGCAACAAAGTTCTCAAAATTTATTTAAAAAGTATAAGTAAATCCTTGTGTAAAAAAAAAAAATTAAATAATAATAATAATAATAATAACTAGTAATTTTTTCTCTAAATGTGGCACAAAAATGGCTACTCCAAATATAAAGGCTAATATCCCTGTTGTTTCAAGTTTAAATTTGAATTTTATTAAAGGTTAGAAATTAATTTTGGTCCCTAGATTTTAAAAAAATAATGTTTGTAATGTTTTGGTCCAAGTATTTACAAGTTTGTAATAATCTAGTCTCTATATTTTCAAATTTATAACAATAATTTAGTCCGTAAATTTTTTGTCAAATTTAATTGTCAATTTTGATTATGTAATTTATTAACAAAATTGATCTTTAATCAATTTATCAACTTATAAGAAATTTCATTAAATCTTATTAGGTTTTTTTTGAAAGAATTGTTACAAATTGTAAATAACAATAACATGTTAAAATTTAGAGACGGTTAAAAAACTAAGCTGTTACAAGCTACTGTTTAAGATTAAGATTAATTTGAACACGCACTTAAAAGGGAAAAATGCAGAATGAGGATTCTAAAAACCAGTATAAGTGGTTAAAAGAAAACCAACATAAGTAATTTAAAAAATCAATCATTAGTGTTATTATTTTTATAATGGAATATCAATTACAAATATTCAGATCACATAAGCTATTGAAAGTTGAAACATTAATGCAAATACTCTAAAAATATATTATATGCTAGGGATAAAAAAATACTTTATTGTTCTCACATCTTAATCATACAATGTACATTTGTCACTCCTATCAGTCTACAATTTGAGCCATCATGTTTCCATTTGTTCACATAAAGATGTGTATTAAATCTAAACCTTAATTATAGTACAAGAATTTAGAGTTATTTAAGTTCTTGATTAATTATTAGTTTTATTGCTTAGGACAATTTTAGCAATGAGTTTAAATCTTCATAAATTTTATTTATGTTATTCATTTAATTTTGGTTCAAATAGGGTTTTCATACTTGAACTTGATCTTATTTTTATATTTTGTCTCCAATGTTTAAATTTGCTTTGTTTTCTAGTCCCTTTAAATATTTTTGTAAGTTTTAGATTCATTGCTTGTTTTCAAAACCTTTAACCCAAATAAAAAACAAAAAAGTGGCATCTATTGATTGTTTTCTTGCATGACGTTTGTGGTTTTAAGGCTACATCTTTTTAGCAATATTTCTTTAGTGTTTCTCAAATTTAAAAACAACTTAATTTATACGTGTTGTTACTAAAACGTTGTGTTTTATTTAATACTAAAACGTTCTCTCTTTTAAAATGAGAAAAATATGGATTACACTTTAACTGATGGGGGTAATAGAAAATGGCAATATTATTTTAAACACTCTCCCAAATTAACCATAAGAATAAATTTTGGTTTATCAATATAATGCTCATCTTGAATCCTTGAAAATATATTTATGGTTTAATGAAATTGATTCCCCAGAAATTTATAAGTATAAAATAATAAATTATTAGGGCTTTCTTTTTAGTTACTCGTTTAAAATGTTTTTGCTCTGTTAGTAAAGAATCCATTACGAGTTCGAATCTCTTGATTTCTAATTACTTTTGTTTAGATAATAAAAAAATTAAGAATTTATATGCTTCTCTTTAAAAATTCTTTTGGGATTGTGTATGGAATCTACTTTTTTCATTTTAAATAAGAGTGCCATTAATTAAACCACATAGGCCTAATTAAGACTCTTTAAGTGAAAAATCAATGTTTAAAGAGGGGTCTAAAAATTATAATATTTAAGGTATATGATCTTAAAATGATGTATAAAAAACTAAGGTTAGATTGGATAATTATTCGGGTGTTGTTTAGTTTTTATTTTGAAATTTATGCTGGATTTTCCAAACAAACATTTAATTCTTAGTCAAATTTCAAATAAGAAAAAAAATTTAAATTAACTTTTTAAAAAAAAAATTTAAAAACTTGGCATAGTTTTTTAAAACACGGCTTGAAATTTTGTAACAAAACAATGAAGCTTATAAGTGAAAGTTGTGTTTATAAACTTAAATTTAAAAAATAAATAGAACTAAAAACCAAATAATTATCATAGACCTAAGCTTTTTGTTGGGTTGTTTCAAATATAGCACAACTAGCTCAAATATTTACAAATATAACAAAATGTAACTATCACTACTAGATGATAATAGTCTATCATTGTCTATCAAGTGACATTTTGCTATATTTGAAAAAAATTTCAACATTTTTGCCATTTAAAATGATTACCCTCTTTTATTTTTAGTTTTTGAAAATTGTGTTGGTTTTCTCACAATTTTTTTTCAATAATTTTTTATCTTCTAAAAACAAAAATAAATACTACAAAATTACTCATTTTCGAAAAAAAAAACAAAAAAGAAAAAAGAAAAGAAAACAAATCAATTATTATGTAAAAGTGATGTTTATACATTTAATTTGACAAAATTAAATGATAGACCTAAGTAATTTTACCCATTCATACCAGGCAATCTGTAAATTGTGAGTAAACAGAGATACGTATGAAAGGGATATCAACAAAACTAACGGGATTTATAAGGAAAAAAAAAAGAAAATAGTATTCAATAGTAATAATCCAGGTACTTTGATATTTATATTGTACCAATCTGAATTTTTTTTTAAAAAAAATAAATAAATAAAATAAAATAAAAAATAAAAAATAAAAAAAAAACCTAAAAATTTTCACTATATGTTTGATTATAGTATTTTAAAAATCACCCACTTGTTAATTTTTTTTAAAAAAAAAATGAACATGTTATGGAGTAATTATTATGTAATAAAATGTGCCCATTCCCCCACAAGTGACCCATAAAAAGGGAAAAGGGATGCACTTAGAGGGTGAAAAAAGGTAAAGAGATTAAAAGAAAAGAGAAAAAAAAAAAGTGAAAGTGAAAAAGAGGAAGTTAAAAAACTATGATAATTTGGAGTTATATAGGGCATAGGGGCGTAGGTTTTAAGGGTAGGGTTCCATAATAGAGGTTAGGTGGTCCATCCTCTATGACTTGTAGGTCACTCCTTGGGTAACATTTGGATGAATCTAGCTTTCCACATAATACACTTTGGAATAACTCTCCTTTTTCTTTCTTCTTAATTACTTTCTACTGATTTTAATTTTCTTTTTTCTTAAAAATTAAAAAATTAAAAAAAAAAATGTGTATGACATGTGTCGTTTTTTTATTTCTAAGTAGTAAGTTGTCCCTACTTATCTAATTTTTTTAGTATTAGTTTCATATTATTGTCCGATTAATTTTTAAATTATTTTTTAGTAAAAAAAAAAAAAAAAAAAAGTTGTGCCATGTCAATTAACAGTAAAAATGTAAACATCAAATTTACCTATATTTTGGTTGGTTTTAAAATATTATTTATTAGATTAGAAAGAAAAGTTTAAAACTTCCAAAGGTTAATATTTAAGAAATTAAGCAAAATTGTTTTACTTTATTTTTTAAAAAATTAATAGTAAACATCATAACATTGTACTAAATATACTAGAACATTTTAAAATGAATTACAATTATTGGAAAAACTAATTTTCAAAAGTTTAGCATTGCAAATTCCAAAGCAGAATGTCAAATAGCATGAATTTGTACTGATTCTTCATCCCATATATTATTTAAAAAAAAAACAAATTAATAAATAAAACTAAAATTTAACTTTTTTTTTTTTACCTAAAAAGTCACAATAAACTCAAAGAAAAAAAAAAATCTCTTTAACTACATGAAATTTTATCTATTTTACATGGAAATTCACACAAAAGCATTTTTGGGTCCCATTCTTACTTTAGGTGAATTATGATAAAGGTTTAAAAAGTTTTTTTTTTGTTTAGGTAATTAATTTATTGTAAATAGATTGTATATATTTTGAAGTTGAAAAAAGTATTGACATGTTTATGTTATTTAATGTGAAGGAATGCTACATTAGTAAACTCAAAACAATTTCCATCATGGTTGGAAACTGAGATTCTCCCTATATACCTACATTAAAACTACTCTTTTATCCTTCCAAAAGTATCATATCCTCATTTTATTTTAAAATTAACATGTGCAAAGCATATTTTTATTATTATTAATAATAATATTGATAATTCACCTCAAATTCGAATATTAGAAAACAATAATGAATTGGTTAAGTTTTCAAGAAATAGAAAACTTAAAAACAAAAATGTTAACATAAATCTTAATAACAAATCTTATCAAGCCAAAATTTAGATAACTTCTTAGAATATTCAAATTCAATATATTCTTCTACTATAGATGCAAATATATAACGATAAAATTACCAATTTGGTTCTATGAAATTAGTTTAAATTTTACTTATTTCTCTTAAAAGTTTTAATATATTGTTTATATTGTCCATGTTTGGTCTTAATTTAGTCTTCATGATTTTAAAAGTTTAAATTTGATTTTTATATTTTGATTAAACATAACAATTTAGGAAACCTTTCTTGCATTAAAAAGCTCACATTTTCTTTTCTCTAATTTGTTACCAAGCCTTGCCCTGATATAGCAAGCTAGTCAACTAAATAAAGGATTAAGAAAAAGAAAAACAAAAAATTGGTAGGAAAATCCATCATGTTGGTAATATTTCATACGTTTCTTGAAACTATAGAAATAAGATAACATTGAAATTTTAAAACTAAATGAAAACTAAATGAAGTAAACTAAAAGTAAACCTAAATTATAGTTTAGTAAATTTAAAATCATATAAATCTAATTGAAATTTATCTAAAAGTAAATACACCAAATTTGTAATTAACGCTCCAAGAAAAAGAAAAACTAGCAAAACAGGGGGAGATGTAGTTTAACTTCCATTGTTTTATACAGAAAAGAAAAATTCTAATTTTCAAACAATATAATATAGAAGAAGGTCTCAATTAGATCAAATCTTTTGTTGAATTAATAATAATTTAAAATTAAGAAAAAAATATATAGGATGATTACATTTGATGTAAGTGGTAGGCAAAATCAACCACCCTCTATTATTATATTATTTACATTTTACCATCCCACCTTTACACAAAAAAAAAACTCTTGATTTGATTGGACTTCCCTTTGAACAATAATTCTTAATAATTAAACTTCATTTAATCAAGTAAACACCATACGGTGAAAAAAAATCCTCAAATTCCCAATTTTGTGTATATTTAAAAAAAATTAAAAATTAATTGATATATTAAAAAAACTTAAACTTTGACTTAACTCATCAACTTTTTAAGATATTGTCAAAAATAGTTCAAAATATTTTTGAAAAAACTCATTTTTATTTAAAATTTTTTATAAAATCTTTAAAAATACACGTTAAAATTTATAACACTTCAATTTTTTTAAGAATAATTTTTTTTAAAAAAAATAAATACTTAAAAATATATTCCAAACGCGCTTCTATAATAAAAGTGAAGAATTAGTAATTCATCCATATAAAATTAAAAGTTTAGAACGGATTAAAAACAAAATTAAAAATTTAATACAATTCAAAATTAGAAATTTATTCAGGGATTTAAAAGTTTCAAAATTTAAAGAGTAAATAAATAGATATAGGAAGTAAAGTTATAAATTACAATAAACAAAATTTTTTATTAAAAAGAAAAAAGGTGTGGTGTTTTGAAATCAAATAGAGAAATCTGATAGGCATAGCCATTATTTATAGTTATTCCCTTCCTCTGAAACTAAAACAATTTTGACACTGCAGAGTTTGAAGAATCATTCATTCCAATTTCCACTCACCCCTTCGTCTTCGTCTTCGTCGTCGTCTTCTTCTTCTTCTTCCTTCTCTTTCTCTCTCCTCCGTTACTGTGAAATGAGAGAGAATTGCACTCCATTAACACTGCAACAGAATTGCTTTTGGTGTAACAAATTTCTTCTTTTTCCCAACACAAACATACACTGCATAATCCCCACATCCCATAAAACTAACTCCCAATTTCATCATTTAAACACTCTTTTTCCCCCTTCTCAACCCAAATCATAAACACCCTCTTTCAATCTGAATTAATCTTCTTCTAATTTCAACAGCTTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTGGATCAACAGAACAGAACACAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACCCCTTCTTCTCTTCACCAACAGACCCAAATCATATCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTTCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGTCGCAGCCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTAGTCGGGGTTTGGAGAATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGCTGATCAGCGGAGCCGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACACACGTGAAGAGCACGTGGGTGCCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCTCAGCTAGTGGCGATGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGTCACCGCCGCCGCCGCTTCCACTTCCAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGGTAAATCTCTCTCTTTTCATTCTTCCATTTTTGCTTTCTTGTGTTTCTTAATGAATTCAGAATCGTGAGCAGCAATAATGAGATATTTGTTTACTCTGTTTCTCTGTGTGTAATGATTTGGTTACTTGTTTCTTTATGTATAATGTTTGTTAGATTAGTGCAAATGTAATCTTATTCAGTTTCAAATTTGCAAGACTTTTATGAGTAGTTTTGATTTTAGTTCTCTTTAAAGATCTTGCAGCAAATTTGCACATTTTGTTGAGGTTATTAACTAAACATGCTCACAATACATATTCATTAGGTATTTTGTTGGAAAACTTACAATCCTTTCATGTTTCTTTCTCTGTTTTCCTCTTCCTTCTCTCTCTCCTTTCTCCAACAAGGAGGGAGTGACTGGTGTATGCCTGTTGGAAATAACTTTTCGAGTGCTTGAAAAAAAGGTTTTTTCTCTTTTAAATGTTAGAAAAGGATTTTGAGTATTAAAGAGGGGTTTTATTTAGAAAGTCATTTCAAACATGCTTTCCGGTTAAACACACACATATTTATTCGGCTGAGTGATCTAAGTTGAGTGGATTCATTTTTCTTGCTCAAATCTATTCTAACTGCAACATCTTTTCCTAAAACCACCTCTTGGAATTTGAAACCAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGTCATGTCTTTAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGAGGTAACCACCACAGGGAATAGGCATTCCTTCTCTTCTTTCTTCTCCAAATCTCCCTTTGTCACTCTCCCCCTCCTGAAAACTTGGTCTCGGCCGCTTGAAAAAAACATGGTCTCTCTGATAGATTTCAGTCGTCTGTTATGTTATCTATAAGTTCTATATAGTTGTTATCATGGTGGTAATGCAATGAATGTTGCACTAAACAGAACAAAGAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTACAGTTCTTCTAGTCTTAAGCTAAGTTTAGTGTAAGATGTCAAGTTCAATGATAGTTGGATACTGATCTTCTGTACATTGCTTAGAAGATGTGCAACTTTCATCCATCCAAATGTCTGCTGAAGCAAGCTAGCTTTTCATATCTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTTAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTACAAAACGAATGAAACCATTCATCTTCAAAAATAGAACATCAAGCATCTTCTTGTGAAATGCCACCGTGGTGGAACAGGCAAAGCGGTTGTAATACTTCCTCTTTCCACATTACTATCTTTTGTCTTCATCTTTGAACATTTTCACTTATTTGGATCTTCTCCAATTATGAGAGGGCATCATTAAATGGAAGTCATTTATTTGATTGAGACAACTTCGATGGTGAATACTTAGTGAGAATTGGAATAAGTAAAGTCAGACCCCACACGAACGATATAAGTAGAAGATGAAAG

mRNA sequence

ATGTGTGGCAGCTATTGGAACAAACTCAATCCAAGAGAACAGAACACAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACCCCTTCTTCTCTTCACCAACAGACCCAAATCATATCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTTCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGTCGCAGCCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTAGTCGGGGTTTGGAGAATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGCTGATCAGCGGAGCCGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACACACGTGAAGAGCACGTGGGTGCCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCTCAGCTAGTGGCGATGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGTCACCGCCGCCGCCGCTTCCACTTCCAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGTCATGTCTTTAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGAGGTAACCACCACAGGGAATAGGCATTCCTTCTCTTCTTTCTTCTCCAAATCTCCCTTTGTCACTCTCCCCCTCCTGAAAACTTGGTCTCGGCCGCTTGAAAAAAACATGGTCTCTCTGATAGATTTCAGTCGTCTGTTATGTTATCTATAAGTTCTATATAGTTGTTATCATGGTGGTAATGCAATGAATGTTGCACTAAACAGAACAAAGAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTACAGTTCTTCTAGTCTTAAGCTAAGTTTAGTGTAAGATGTCAAGTTCAATGATAGTTGGATACTGATCTTCTGTACATTGCTTAGAAGATGTGCAACTTTCATCCATCCAAATGTCTGCTGAAGCAAGCTAGCTTTTCATATCTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTTAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTACAAAACGAATGAAACCATTCATCTTCAAAAATAGAACATCAAGCATCTTCTTGTGAAATGCCACCGTGGTGGAACAGGCAAAGCGGTTGTAATACTTCCTCTTTCCACATTACTATCTTTTGTCTTCATCTTTGAACATTTTCACTTATTTGGATCTTCTCCAATTATGAGAGGGCATCATTAAATGGAAGTCATTTATTTGATTGAGACAACTTCGATGGTGAATACTTAGTGAGAATTGGAATAAGTAAAGTCAGACCCCACACGAACGATATAAGTAGAAGATGAAAG

Coding sequence (CDS)

ATGTGTGGCAGCTATTGGAACAAACTCAATCCAAGAGAACAGAACACAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACCCCTTCTTCTCTTCACCAACAGACCCAAATCATATCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTTCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGTCGCAGCCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTAGTCGGGGTTTGGAGAATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGCTGATCAGCGGAGCCGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACACACGTGAAGAGCACGTGGGTGCCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCTCAGCTAGTGGCGATGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGTCACCGCCGCCGCCGCTTCCACTTCCAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGTCATGTCTTTAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGAGGTAACCACCACAGGGAATAG

Protein sequence

MCGSYWNKLNPREQNTTMLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHRE

Homology

[Close]

BLAST of CmUC05G107930 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 554.3 bits (1427), Expect = 6.9e-154
Identity = 282/302 (93.38%), Postives = 289/302 (95.70%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLL ATPCLPP Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLTATPCLPPPQ 60

Query: 78  PPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCR 137
           P PNQTADD ++RSR LENLKRTQDFGFGKGDSL+ GAGNN SDEQVKGD GDGSMAVCR
Sbjct: 61  PLPNQTADDVTDRSRSLENLKRTQDFGFGKGDSLMGGAGNNVSDEQVKGDAGDGSMAVCR 120

Query: 138 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGG 197
           DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDGG
Sbjct: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGG 180

Query: 198 SSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAP 257
           SSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAP
Sbjct: 181 SSGSSSAGAKRPRVLIPSQSTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAP 240

Query: 258 AVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH 317
           AVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNHH
Sbjct: 241 AVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHH 300

Query: 318 RE 319
           R+
Sbjct: 301 RD 302

[Close]

BLAST of CmUC05G107930 vs. NCBI nr
Match: XP_004142483.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_008495 [Cucumis sativus])

HSP 1 Score: 552.4 bits (1422), Expect = 2.6e-153
Identity = 282/303 (93.07%), Postives = 290/303 (95.71%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI+G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 258 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH 317
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 318 HRE 319
           HRE
Sbjct: 301 HRE 303

[Close]

BLAST of CmUC05G107930 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 552.0 bits (1421), Expect = 3.4e-153
Identity = 282/303 (93.07%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 258 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH 317
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 318 HRE 319
           HRE
Sbjct: 301 HRE 303

[Close]

BLAST of CmUC05G107930 vs. NCBI nr
Match: KAA0034761.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 541.6 bits (1394), Expect = 4.6e-150
Identity = 282/319 (88.40%), Postives = 289/319 (90.60%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQ-------------- 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQ              
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILMTL 240

Query: 258 --DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 317
             DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Sbjct: 241 KPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300

Query: 318 NAFPSISHLHLERGNHHRE 319
           NAFPSISHLHL+ GNHHRE
Sbjct: 301 NAFPSISHLHLDSGNHHRE 319

[Close]

BLAST of CmUC05G107930 vs. NCBI nr
Match: KAG6601127.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.8 bits (1327), Expect = 2.7e-142
Identity = 265/301 (88.04%), Postives = 277/301 (92.03%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60

Query: 78  PPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCR 137
           PPPNQ  D+ S+RSR LENLKRTQDFGFGKGDSLI G GN+G D+QVKGDGGDGS+ VCR
Sbjct: 61  PPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCR 120

Query: 138 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGG 197
           DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    G
Sbjct: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----G 180

Query: 198 SSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPA 257
           SSGSSSAGAKRP+VLIPSQ+  AAAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPA
Sbjct: 181 SSGSSSAGAKRPKVLIPSQTTAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPA 240

Query: 258 VFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR 317
           VF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH R
Sbjct: 241 VFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLR 294

Query: 318 E 319
           +
Sbjct: 301 D 294

[Close]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-54
Identity = 145/312 (46.47%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------- 62

Query: 78  PPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGD 137
             P Q  +D        + R +   N   TQ   F   +    G  +N S     G G  
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG---SGSGAS 122

Query: 138 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 197
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 123 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PT 182

Query: 198 SASGDGGSSGSSSAGAKRPRVLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFK 257
            A+   GSS S+S+G K+PR++   Q     A    STSN T P+SFET+SS QD    +
Sbjct: 183 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 242

Query: 258 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 317
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 243 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 292

[Close]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-32
Identity = 81/163 (49.69%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 136 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGD 195
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    S SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 196 GGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 255
           GG SGS  AG       IP +        TS+++   S        +ASF    PG V +
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASF----PGEVSS 213

Query: 256 PAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 298
            A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 DALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.0e-32
Identity = 80/173 (46.24%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 135 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASG 194
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 195 DGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 254
                 SSS   ++ ++ I  QS      S + +  P    TT+S Q+  F++ LPG + 
Sbjct: 100 -----SSSSPSERKKKLKIDKQS------SPNVSLLP----TTTSRQERGFREGLPGKIE 159

Query: 255 APAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 307
           APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 APAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-28
Identity = 79/190 (41.58%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 108 GDSLISGAGNNGSDEQVK--GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCST 167
           G++  +GAG   +   ++  G GG      C+DCGN+AKK+C + RCRTCCK RG  CST
Sbjct: 114 GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECST 173

Query: 168 HVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVTAAAAST 227
           HV+STWVPAA+RRERQ  +      +    G S        KR R  +P         +T
Sbjct: 174 HVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLP---------AT 233

Query: 228 SNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGH 287
           S++       + S  +  +F    P  V + AVFRC RV+++  GE E AYQ  V+IGGH
Sbjct: 234 SSSLVCTRIPSHSGLEVGNF----PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGH 284

Query: 288 VFKGFLYDQG 296
           +FKG LYD G
Sbjct: 294 IFKGILYDLG 284

[Close]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-27
Identity = 85/202 (42.08%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 100 TQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGR 159
           T   G G G S  S    +G    +   G       C+DCGN++KK+C + RCRTCCK R
Sbjct: 84  TSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSR 143

Query: 160 GNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGGSSGSSSAGAKRPRVLIPSQSVT 219
           G  C THVKSTWVPAA+RRERQ  +       ++G        S   KR R  IP     
Sbjct: 144 GLDCPTHVKSTWVPAAKRRERQQQL-------STGQQPQQLGGSV-PKRQRERIP----- 203

Query: 220 AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQAT 279
             A STS A T      TS  +  +F    P  V + AVFRC RV+++   E E AY+  
Sbjct: 204 --ARSTSMAYTRIPSNNTSGLEVGNF----PPEVSSSAVFRCVRVSSVDDEEEEYAYKTA 263

Query: 280 VNIGGHVFKGFLYDQGADDKNA 302
           V+IGGHVFKG LYDQG  ++++
Sbjct: 264 VSIGGHVFKGVLYDQGPAERSS 266

[Close]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.3e-153
Identity = 282/303 (93.07%), Postives = 290/303 (95.71%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI+G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 258 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH 317
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 318 HRE 319
           HRE
Sbjct: 301 HRE 303

[Close]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.6e-153
Identity = 282/303 (93.07%), Postives = 289/303 (95.38%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 258 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNH 317
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+ GNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 318 HRE 319
           HRE
Sbjct: 301 HRE 303

[Close]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL
Match: A0A5D3CCT8 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003120 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.2e-150
Identity = 282/319 (88.40%), Postives = 289/319 (90.60%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 78  PPP-NQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVC 137
           PPP N T DD ++R+R  +NLKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 138 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDG 197
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA+ASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 198 GSSGSSSAGAKRPRVLIPSQS-VTAAAASTSNATTPRSFETTSSHQ-------------- 257
           GSSGSSSAGAKRPRVLIPSQS   AAAASTSNATTPRSFETTSSHQ              
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILMTL 240

Query: 258 --DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 317
             DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Sbjct: 241 KPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300

Query: 318 NAFPSISHLHLERGNHHRE 319
           NAFPSISHLHL+ GNHHRE
Sbjct: 301 NAFPSISHLHLDSGNHHRE 319

[Close]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL
Match: A0A6J1GXY1 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458506 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.2e-140
Identity = 264/302 (87.42%), Postives = 277/302 (91.72%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60

Query: 78  PPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCR 137
           PPPNQ  D+ S+RSR LENLKRTQDFGFGKGDSLI G GN+G D+QVKGDGGDGS+ VCR
Sbjct: 61  PPPNQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCR 120

Query: 138 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGG 197
           DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    G
Sbjct: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----G 180

Query: 198 SSGSSSAGAKRPRVLIPSQ-SVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAP 257
           SSGSSSAGAKRP+VLIPSQ +  AAAASTSNATTPRSFETTSSHQDASFKKSLPG V+AP
Sbjct: 181 SSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQAP 240

Query: 258 AVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHH 317
           AVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH 
Sbjct: 241 AVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHL 295

Query: 318 RE 319
           R+
Sbjct: 301 RD 295

[Close]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL
Match: A0A6J1JNR9 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486128 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.7e-140
Identity = 264/301 (87.71%), Postives = 275/301 (91.36%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60

Query: 78  PPPNQTADDGSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGDGSMAVCR 137
           PPPNQ  D+ S+R R LENLKRTQDFGFGKGDSLI G GN+G D+QVKGDGGDGS+ VCR
Sbjct: 61  PPPNQMPDEVSDRCRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCR 120

Query: 138 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGDGG 197
           DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVA++    G
Sbjct: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----G 180

Query: 198 SSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPA 257
           SSGSSSAGAKRP+VLIPSQ  TAAAASTSNATTPRSFETTSSHQDASFKKSLPG VRAPA
Sbjct: 181 SSGSSSAGAKRPKVLIPSQ--TAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPA 240

Query: 258 VFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLERGNHHR 317
           VF+CHRVTAISSG GEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHLE GNH R
Sbjct: 241 VFKCHRVTAISSGVGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLR 292

Query: 318 E 319
           +
Sbjct: 301 D 292

[Close]

BLAST of CmUC05G107930 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-55
Identity = 145/312 (46.47%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------- 62

Query: 78  PPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGD 137
             P Q  +D        + R +   N   TQ   F   +    G  +N S     G G  
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG---SGSGAS 122

Query: 138 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 197
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 123 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PT 182

Query: 198 SASGDGGSSGSSSAGAKRPRVLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFK 257
            A+   GSS S+S+G K+PR++   Q     A    STSN T P+SFET+SS QD    +
Sbjct: 183 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 242

Query: 258 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 317
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 243 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 292

[Close]

BLAST of CmUC05G107930 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-55
Identity = 145/312 (46.47%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------- 62

Query: 78  PPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGD 137
             P Q  +D        + R +   N   TQ   F   +    G  +N S     G G  
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG---SGSGAS 122

Query: 138 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 197
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 123 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PT 182

Query: 198 SASGDGGSSGSSSAGAKRPRVLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFK 257
            A+   GSS S+S+G K+PR++   Q     A    STSN T P+SFET+SS QD    +
Sbjct: 183 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 242

Query: 258 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 317
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 243 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 292

[Close]

BLAST of CmUC05G107930 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-55
Identity = 145/312 (46.47%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 18  MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 77
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 90  MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------- 149

Query: 78  PPPNQTADD-------GSERSRGLENLKRTQDFGFGKGDSLISGAGNNGSDEQVKGDGGD 137
             P Q  +D        + R +   N   TQ   F   +    G  +N S     G G  
Sbjct: 150 GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG---SGSGAS 209

Query: 138 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 197
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 210 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PT 269

Query: 198 SASGDGGSSGSSSAGAKRPRVLIPSQSVTAAA---ASTSNATTPRSFETTSSHQD-ASFK 257
            A+   GSS S+S+G K+PR++   Q     A    STSN T P+SFET+SS QD    +
Sbjct: 270 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 329

Query: 258 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 317
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 330 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 379

[Close]

BLAST of CmUC05G107930 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 141.7 bits (356), Expect = 9.9e-34
Identity = 81/163 (49.69%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 136 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASGD 195
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    S SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 196 GGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 255
           GG SGS  AG       IP +        TS+++   S        +ASF    PG V +
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASF----PGEVSS 213

Query: 256 PAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 298
            A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 DALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]

BLAST of CmUC05G107930 vs. TAIR 10
Match: AT3G54430.1 (SHI-related sequence 6 )

HSP 1 Score: 139.0 bits (349), Expect = 6.4e-33
Identity = 80/173 (46.24%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 135 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVASASG 194
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 195 DGGSSGSSSAGAKRPRVLIPSQSVTAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 254
                 SSS   ++ ++ I  QS      S + +  P    TT+S Q+  F++ LPG + 
Sbjct: 100 -----SSSSPSERKKKLKIDKQS------SPNVSLLP----TTTSRQERGFREGLPGKIE 159

Query: 255 APAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 307
           APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 APAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

The following BLAST results are available for this feature:

BLAST of CmUC05G107930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892899.1	6.9e-154	93.38	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]
XP_004142483.1	2.6e-153	93.07	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical pro...	[more]
XP_008446964.1	3.4e-153	93.07	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
KAA0034761.1	4.6e-150	88.40	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein...	[more]
KAG6601127.1	2.7e-142	88.04	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmUC05G107930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	1.7e-54	46.47	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	1.4e-32	49.69	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9M2U4	9.0e-32	46.24	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
Q9SD40	2.1e-28	41.58	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	1.8e-27	42.08	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]

BLAST of CmUC05G107930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX6	1.3e-153	93.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1	[more]
A0A1S3BFS5	1.6e-153	93.07	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S...	[more]
A0A5D3CCT8	2.2e-150	88.40	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1GXY1	1.2e-140	87.42	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1JNR9	2.7e-140	87.71	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CmUC05G107930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	1.2e-55	46.47	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	1.2e-55	46.47	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	1.2e-55	46.47	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	9.9e-34	49.69	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	6.4e-33	46.24	SHI-related sequence 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 249..295 e-value: 3.7E-26 score: 88.8
None	No IPR available	PFAM	PF05142	DUF702	coord: 134..297 e-value: 3.1E-57 score: 193.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..245
None	No IPR available	PANTHER	PTHR31604:SF28	PROTEIN SHI RELATED SEQUENCE 6	coord: 18..309
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 135..177 e-value: 1.5E-24 score: 83.7
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 18..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC05G107930.1	CmUC05G107930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding