CmUC01G013920 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G013920
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RPA-interacting protein
Location	CmU531Chr01: 27329120 .. 27333164 (-)
RNA-Seq Expression	CmUC01G013920
Synteny	CmUC01G013920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACACCGTCGACATGAAAATGACCAATCACAATCACAAGTCGAGGGCAAATTTTGGCACCGCAATCGTAAAATAAAACCCTCAAAATGGAAGACGATGATCCAAATTCCGTCATTGAAACCCACCGTTCTTCGATTAAGATCCATCCTCATTACAACAATCAACAGTCATGGAAGCAGAAGGTCAATTTTCTCTTTTCTCGATGTATTGTTCTGTGTTTTTGGCGGGTTCTTGTTTTTATTCGAAACTGAAATTTTACTATCGATAGCTGAGGGAAAACTGTTGCAAGAGAGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGTTCCCCATGTCCTCGCCCACTTATCCCCATTCTCTCAATAATCGACAGCAGGTCAATTTTTTCTTTTCCGTTCTTGTATTTAGGTTTTTTGTTCGTCATTGCAATGAATTTTAACAATTAGTTGTTGGGTGTTGCATAATTGGTGCTTCAGATACTTTAATCCTTATTTTGTTATGTAATTCGTGTCTTTTCTTTTTGGTATTTTGTTGGTTGTAGGATTTTATCAAATCTGCTTTTCAAGACATCTTTTCTGATGAGCTGAAAAAAATTAAAGACCAATCTGGGAATGATTATGATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCAGGATGCTTATCAAGGTGAAGGTGAAGACATATTGTTGGAAATGCAAAGGATTTTTTATGAGGATCTGAATGTTGATCTGAGACAGAAAGGTGATTTTGCTGATGCAGTTTTTCATTGCCTTCACTCACTGTCTCAAATCTGTTGATATATTTTCTGTTTCTGAATTGAAAAACATCATCCTCCTAAGTCCTTCCATAACTGGGGAAGCTCTTTTGATCTTTCTGTTTTATGATAGTAGTCATTAATTGGGATTAATTTTCAGTAGACAAGTTCATGCAGCCATAGTCAAAGTCAAGTAATAATAATAATTGAACTTATGCTGTCGTTTCATCCGTAGGTTCTGTTATAATATATGGTGATGGATCTTCTCTGTTATTATTTTAGCTGTTAAAATCACTATTTTGAGTAGGATGTTTACTCAGCTCTTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCTGTTTACGAACACATGCAACTTAATAGTGAGAAGGTTGGTTTTCATCTACTCTTGAGGGTTGTACACACTTTTGCATGCAAATTACATCATGTGTTTGAAACTGCTGAAGCTGAAAATCTTATATGTCTTCTACTAGAGTAATTAACTTGAAATTTTGGATACTTTTGGCATTCTTTCTAATCAAATCTTAGGTTTACATTGGTAAAGCATGATTTATTCTTATTATGATCACAAGCTTATATTTCCTTTTCATGCCATGGTAGGTTCTTCAGAAGTTATGGTGTCCTATATGTAAACAAGGAGAGCTTCAAGAGAACAACCACTTCATACATTGTACTCATTGTGGACTTCGGCTTACCAAAGGCAATGAGGTTTTCCACTAACTTGATCTTAAGACCTCATAGTCCACCATCCTCTTTTTAATCCCATCTTGTACTCTGAAGTCCATATTAGCTTATTGTTAGGTGATATAATATTAAATTCCCATCACCCATCAGCTTAAGTTTTGGGTCAATCGTAAATTTTGATTTAACAAGTATTAGAGCAAGTGGTACAGAAAGTACCCTGTTCAAACTCCTGCAATATTATTTTCTCCCCAATCAATATTGATTTTCACTTGTTGGGTCTTCTACATATTTCAAGCCCCCAAGTGAGGAGGAATGTTAGAGGATATAATATTGAATTTACTTTCATCCAAGAGCTTAAGCTTTTGAATCAATCGGTGATTTAAGATGGTATCAGAGCAGGAGATCCAGTGTTCGAGTCCCTACAATGTTATTTCCTTCTCAATTAATCTTGATTTTCACTTGTTGGAACTTCTACATATTTCAAGCCCACAAGTGAGGAGAATGTTAGATGATACAATATTAAATTTGTCTCTACCTATTAGTTTAAACTGGGTCAATTGGTGATTTAACAGTTATTAGGTCGTCGCTATTACTTTGACTAAGTATGTAGACTTAGAAATCAATGGTTGTGCTGTCTTTTTAACATGTCAAGTCAATGAAGACCACTCCCTACCTAGACGGGAAGTTTGTGCCTATGTTTATTGTCATTGGCCATGGGAGAGATGTTATGAAAAATTGCACTAGGGCTAATTGAATATCTGCTGCTTCCTTCTTGCTTTTCAAATCACCCCCCCCCCCCCCCCCCCAAAAAAAAAAATATATAATAATAATAATTATAATAATATAATTAAATTAAACATCTGTGGAAGGTAACTGCATGGAATAACTGTATTCAATATCAGTATAACATATTAAAGGCTTAATCGATAATGAAATGTTAGCTTTGCAGTCTTTTTATTATTTGTCCTATGGTCTTTCAGGTTACTCTGGACATCCTCTGTTGTCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGGAGATTTAACATAACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGGTTGTAATATAGCATGTTAAGAATCAGATGTCTCATTTATGATTAAAATTATTTTATTTTTATTAGTTATGGAAATAGATGACTGAGACACTTGAGGCTGGCTAAGAATCAGGTGGCTGAAGTTTTATGGATTGGATCATTCTTACTTAGCTATGACAGAAAAATGATTACACATTTGAGGTTAGAATAAGGCATGTGAAGAATCAGGTGTCTCAAGTTTTAAGATTTAAATCATTTTCATTAGATGACAATTAGTTTTGGAAGGTTGTAAACATGCTTATGTGTAGGATCTGCTGCTTGTCAAACCTAGCCCAAAGAGCTGATGTCAGGTTCAATGTCTTTTCAAATTTTTCGTTAAACCAAAGTCCATTCTAGAACTGTGGTCAAAGCCTAAGTCTATCTAAGTTCAATATTTATCAAACTTAGTACTTAGAGTTGGGGTCGATGTCTATCGAACTAGAACTAAGGTCGAAGCTTGTGTCTATTAAGTTGAAATATTTATTGAATCTAGCCCTACCAACTAACAAGCGTAGTCATTTCTTCAAATTTGTTTAGGTTTTGTTGTCTTTTCTCTTTCCGAGTTGTTTTATATATATACTCTCTGGATTTAACAGAAACATATTTCATATCATAATTAATATTATCTTCAAAAGCATATGACTGAAATAAACAAGCTTTATTTATTTATTTGTTTGTTTGGGAAATACTTAAAACTAGTTCTTACAATTATGACAAAATGGAAGCCAACATTAATTAAATAAACTAAAACATAGTACAATTTTTTCTATAGACAAACTACTAAATAATGATAATAATAAACTAAGTAGTACTAATTACATTTTTTTTTTTTTTATCCAAGTCCAATTACATTCATATATACACTAGAGTGAACATATATACTAATTATCGTTGATCTTATGTTTATGTTGATGATGGTAGATAGTTCAAATTTTTCAATAAAGTTATATGCATGTTGAGCTATACTCCTCTAGGCAGGTTCTCTCGGAATAAAAATATATCACATGAGAGCGTCTTCTCACCATTAATAGATGATGAGTATTCATTTCTTGTAATACATTTTAATTTCTAACCTAATAATTAATATTCATCAAGACAGACACAAAAAGAACATTGTTGCAGTCCAAACTCTAAGGAACATGATAATGGGTTCAAGCCTGATGGCGACCACCTTGATCCTTCTCTGCGCCGGGCTTGCCGCGGTCCTCAACAGCGCGTACAGCATCAAAAAGCCGGCGACCAGTACCGTGCAGATACAGCATCAAGAAGATTGTGCTATTTTGGAGTGATGATTTTTGTGGTTTATAATCTTGACTTTGTGTGTAAGAAGAGGAGTAATGGGAAGAGGATGAATAATCATGAGGTTTGA

mRNA sequence

ATGTCACACCGTCGACATGAAAATGACCAATCACAATCACAAGTCGAGGGCAAATTTTGGCACCGCAATCGTAAAATAAAACCCTCAAAATGGAAGACGATGATCCAAATTCCGTCATTGAAACCCACCGTTCTTCGATTAAGATCCATCCTCATTACAACAATCAACAGTCATGGAAGCAGAAGGTCAATTTTCTCTTTTCTCGATGTATTGTTCTGTGTTTTTGGCGGGTTCTTGTTTTTATTCGAAACTGAAATTTTACTATCGATAGCTGAGGGAAAACTGTTGCAAGAGAGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGATTTTATCAAATCTGCTTTTCAAGACATCTTTTCTGATGAGCTGAAAAAAATTAAAGACCAATCTGGGAATGATTATGATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCAGGATGCTTATCAAGGTGAAGGTGAAGACATATTGTTGGAAATGCAAAGGATTTTTTATGAGGATCTGAATGTTGATCTGAGACAGAAAGCTGTTAAAATCACTATTTTGAGTAGGATGTTTACTCAGCTCTTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCTGTTTACGAACACATGCAACTTAATAGTGAGAAGGTTCTTCAGAAGTTATGGTGTCCTATATGTAAACAAGGAGAGCTTCAAGAGAACAACCACTTCATACATTGTACTCATTGTGGACTTCGGCTTACCAAAGGCAATGAGGTTACTCTGGACATCCTCTGTTGTCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGGAGATTTAACATAACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGACACAAAAAGAACATTGTTGCAGTCCAAACTCTAAGGAACATGATAATGGGTTCAAGCCTGATGGCGACCACCTTGATCCTTCTCTGCGCCGGGCTTGCCGCGGTCCTCAACAGCGCGTACAGCATCAAAAAGCCGGCGACCAGTACCGTGCAGATACAGCATCAAGAAGATTGTGCTATTTTGGAGTGATGATTTTTGTGGTTTATAATCTTGACTTTGTGTGTAAGAAGAGGAGTAATGGGAAGAGGATGAATAATCATGAGGTTTGA

Coding sequence (CDS)

ATGTCACACCGTCGACATGAAAATGACCAATCACAATCACAAGTCGAGGGCAAATTTTGGCACCGCAATCGTAAAATAAAACCCTCAAAATGGAAGACGATGATCCAAATTCCGTCATTGAAACCCACCGTTCTTCGATTAAGATCCATCCTCATTACAACAATCAACAGTCATGGAAGCAGAAGGTCAATTTTCTCTTTTCTCGATGTATTGTTCTGTGTTTTTGGCGGGTTCTTGTTTTTATTCGAAACTGAAATTTTACTATCGATAGCTGAGGGAAAACTGTTGCAAGAGAGTCAGAGAAGGAAGAAACCGCTTGCTCTGGAAGATGAGGATTTTATCAAATCTGCTTTTCAAGACATCTTTTCTGATGAGCTGAAAAAAATTAAAGACCAATCTGGGAATGATTATGATGAGAATTTACCTTCTGTCCCTGAGGCTGCTGATGTTCTTTGGGAATATGAGGGGATTCAGGATGCTTATCAAGGTGAAGGTGAAGACATATTGTTGGAAATGCAAAGGATTTTTTATGAGGATCTGAATGTTGATCTGAGACAGAAAGCTGTTAAAATCACTATTTTGAGTAGGATGTTTACTCAGCTCTTTGCAGAATCTGAAGGCCCTATTGTAACATGGGAAGATGAAGAAGACGAGTTCTTAGCCCGTGCTGTTTACGAACACATGCAACTTAATAGTGAGAAGGTTCTTCAGAAGTTATGGTGTCCTATATGTAAACAAGGAGAGCTTCAAGAGAACAACCACTTCATACATTGTACTCATTGTGGACTTCGGCTTACCAAAGGCAATGAGGTTACTCTGGACATCCTCTGTTGTCGGTTGGCCGATGTGCATGCTGAACATCTCGATCGGGGCTGTAGATTGAAGCCTAAGTTTTGTGTTGAGAGGAGATTTAACATAACTGCATTGTACATCTCTTGTGAAGGTTGCAACACATTTGAGACACAAAAAGAACATTGTTGCAGTCCAAACTCTAAGGAACATGATAATGGGTTCAAGCCTGATGGCGACCACCTTGATCCTTCTCTGCGCCGGGCTTGCCGCGGTCCTCAACAGCGCGTACAGCATCAAAAAGCCGGCGACCAGTACCGTGCAGATACAGCATCAAGAAGATTGTGCTATTTTGGAGTGATGATTTTTGTGGTTTATAATCTTGACTTTGTGTGTAAGAAGAGGAGTAATGGGAAGAGGATGAATAATCATGAGGTTTGA

Protein sequence

MSHRRHENDQSQSQVEGKFWHRNRKIKPSKWKTMIQIPSLKPTVLRLRSILITTINSHGSRRSIFSFLDVLFCVFGGFLFLFETEILLSIAEGKLLQESQRRKKPLALEDEDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILLEMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDRGCRLKPKFCVERRFNITALYISCEGCNTFETQKEHCCSPNSKEHDNGFKPDGDHLDPSLRRACRGPQQRVQHQKAGDQYRADTASRRLCYFGVMIFVVYNLDFVCKKRSNGKRMNNHEV

Homology

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BLAST of CmUC01G013920 vs. NCBI nr
Match: TYJ99094.1 (uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 3.9e-101
Identity = 184/242 (76.03%), Postives = 201/242 (83.06%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DFIKSAFQDIFSDELKKIKD+S ND++ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQK----------------------------AVKITILSRMFTQLF 230
           EMQRIFYEDLNVD+RQK                            A K  ILSRMFTQ F
Sbjct: 130 EMQRIFYEDLNVDMRQKGDFADAVYFLKFIISKFVYSVAVFQGLNAFKNAILSRMFTQFF 189

Query: 231 AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLQKLWCPICKQGELQENNHFIHCTHCG 290
           AESEGPIVTWEDEEDEFLARAVYEHMQL++EK+L+K WCP+CKQGELQEN+HFIHCT CG
Sbjct: 190 AESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENSHFIHCTQCG 249

Query: 291 LRLTKGNEVTLDILCCRLADVHAEHLDRGCRLKPKFCVERRFNITALYISCEGCNTFETQ 325
           LRL KGNEVTLD+L CRLADVHAEHLDRGCRLKPKFCVE RFNITALYISCEGCNTFE +
Sbjct: 250 LRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVK 309

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BLAST of CmUC01G013920 vs. NCBI nr
Match: XP_038893884.1 (uncharacterized protein LOC120082685 isoform X1 [Benincasa hispida])

HSP 1 Score: 372.1 bits (954), Expect = 6.2e-99
Identity = 177/210 (84.29%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DFIKSAFQDIFSDELKKIKDQS NDY++NLPSVPEAADVLWEYEG+QDAY+GEGE+ILL
Sbjct: 70  QDFIKSAFQDIFSDELKKIKDQSVNDYNKNLPSVPEAADVLWEYEGVQDAYEGEGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLN+DLR K                ESEGPIVTWEDEEDEFLARAVYEHM+L
Sbjct: 130 EMQRIFYEDLNIDLRYK----------------ESEGPIVTWEDEEDEFLARAVYEHMEL 189

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           NSEKVL+K WCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLD+L CRLADVHAEHLDR
Sbjct: 190 NSEKVLEKFWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDLLRCRLADVHAEHLDR 249

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKP FCVE +FNITALYISCEGCNTFE
Sbjct: 250 GCRLKPNFCVESKFNITALYISCEGCNTFE 263

[Close]

BLAST of CmUC01G013920 vs. NCBI nr
Match: XP_031737337.1 (uncharacterized protein LOC101216926 isoform X4 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 1.7e-96
Identity = 173/210 (82.38%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +D IKSAFQDIF+DELKKIKD+S NDY+ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 19  QDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 78

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLNVDLRQK                ESE PIVTWEDEEDEFLARAVYEHMQL
Sbjct: 79  EMQRIFYEDLNVDLRQK----------------ESEDPIVTWEDEEDEFLARAVYEHMQL 138

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           ++EK+L+K WCP+CKQGELQENNHFIHCTHCGLRL KGNEVTLD+L CRLADVHAEHLDR
Sbjct: 139 SNEKILEKFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDR 198

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKPKFCVE RFNITALYISCEGCNTFE
Sbjct: 199 GCRLKPKFCVESRFNITALYISCEGCNTFE 212

[Close]

BLAST of CmUC01G013920 vs. NCBI nr
Match: XP_011651131.1 (uncharacterized protein LOC101216926 isoform X1 [Cucumis sativus] >KGN64242.1 hypothetical protein Csa_013956 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 1.7e-96
Identity = 173/210 (82.38%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +D IKSAFQDIF+DELKKIKD+S NDY+ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLNVDLRQK                ESE PIVTWEDEEDEFLARAVYEHMQL
Sbjct: 130 EMQRIFYEDLNVDLRQK----------------ESEDPIVTWEDEEDEFLARAVYEHMQL 189

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           ++EK+L+K WCP+CKQGELQENNHFIHCTHCGLRL KGNEVTLD+L CRLADVHAEHLDR
Sbjct: 190 SNEKILEKFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDR 249

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKPKFCVE RFNITALYISCEGCNTFE
Sbjct: 250 GCRLKPKFCVESRFNITALYISCEGCNTFE 263

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BLAST of CmUC01G013920 vs. NCBI nr
Match: XP_008437393.1 (PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 3.8e-96
Identity = 172/210 (81.90%), Postives = 187/210 (89.05%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DFIKSAFQDIFSDELKKIKD+S ND++ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLNVD+RQK                ESEGPIVTWEDEEDEFLARAVYEHMQL
Sbjct: 130 EMQRIFYEDLNVDMRQK----------------ESEGPIVTWEDEEDEFLARAVYEHMQL 189

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           ++EK+L+K WCP+CKQGELQEN+HFIHCT CGLRL KGNEVTLD+L CRLADVHAEHLDR
Sbjct: 190 SNEKILEKFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDR 249

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKPKFCVE RFNITALYISCEGCNTFE
Sbjct: 250 GCRLKPKFCVESRFNITALYISCEGCNTFE 263

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BLAST of CmUC01G013920 vs. ExPASy TrEMBL
Match: A0A5D3BJ40 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002980 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.9e-101
Identity = 184/242 (76.03%), Postives = 201/242 (83.06%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DFIKSAFQDIFSDELKKIKD+S ND++ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQK----------------------------AVKITILSRMFTQLF 230
           EMQRIFYEDLNVD+RQK                            A K  ILSRMFTQ F
Sbjct: 130 EMQRIFYEDLNVDMRQKGDFADAVYFLKFIISKFVYSVAVFQGLNAFKNAILSRMFTQFF 189

Query: 231 AESEGPIVTWEDEEDEFLARAVYEHMQLNSEKVLQKLWCPICKQGELQENNHFIHCTHCG 290
           AESEGPIVTWEDEEDEFLARAVYEHMQL++EK+L+K WCP+CKQGELQEN+HFIHCT CG
Sbjct: 190 AESEGPIVTWEDEEDEFLARAVYEHMQLSNEKILEKFWCPMCKQGELQENSHFIHCTQCG 249

Query: 291 LRLTKGNEVTLDILCCRLADVHAEHLDRGCRLKPKFCVERRFNITALYISCEGCNTFETQ 325
           LRL KGNEVTLD+L CRLADVHAEHLDRGCRLKPKFCVE RFNITALYISCEGCNTFE +
Sbjct: 250 LRLNKGNEVTLDLLRCRLADVHAEHLDRGCRLKPKFCVESRFNITALYISCEGCNTFEVK 309

[Close]

BLAST of CmUC01G013920 vs. ExPASy TrEMBL
Match: A0A0A0LTY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 8.2e-97
Identity = 173/210 (82.38%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +D IKSAFQDIF+DELKKIKD+S NDY+ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDLIKSAFQDIFADELKKIKDESVNDYNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLNVDLRQK                ESE PIVTWEDEEDEFLARAVYEHMQL
Sbjct: 130 EMQRIFYEDLNVDLRQK----------------ESEDPIVTWEDEEDEFLARAVYEHMQL 189

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           ++EK+L+K WCP+CKQGELQENNHFIHCTHCGLRL KGNEVTLD+L CRLADVHAEHLDR
Sbjct: 190 SNEKILEKFWCPMCKQGELQENNHFIHCTHCGLRLNKGNEVTLDLLRCRLADVHAEHLDR 249

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKPKFCVE RFNITALYISCEGCNTFE
Sbjct: 250 GCRLKPKFCVESRFNITALYISCEGCNTFE 263

[Close]

BLAST of CmUC01G013920 vs. ExPASy TrEMBL
Match: A0A1S3AU18 (uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 172/210 (81.90%), Postives = 187/210 (89.05%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DFIKSAFQDIFSDELKKIKD+S ND++ENLPSVPEAADVLWEYEGI DAY+G+GE+ILL
Sbjct: 70  QDFIKSAFQDIFSDELKKIKDESVNDFNENLPSVPEAADVLWEYEGIHDAYEGDGEEILL 129

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDLNVD+RQK                ESEGPIVTWEDEEDEFLARAVYEHMQL
Sbjct: 130 EMQRIFYEDLNVDMRQK----------------ESEGPIVTWEDEEDEFLARAVYEHMQL 189

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           ++EK+L+K WCP+CKQGELQEN+HFIHCT CGLRL KGNEVTLD+L CRLADVHAEHLDR
Sbjct: 190 SNEKILEKFWCPMCKQGELQENSHFIHCTQCGLRLNKGNEVTLDLLRCRLADVHAEHLDR 249

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKPKFCVE RFNITALYISCEGCNTFE
Sbjct: 250 GCRLKPKFCVESRFNITALYISCEGCNTFE 263

[Close]

BLAST of CmUC01G013920 vs. ExPASy TrEMBL
Match: A0A6J1C5H3 (uncharacterized protein LOC111008573 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008573 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 7.4e-90
Identity = 164/210 (78.10%), Postives = 176/210 (83.81%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DF+KSAFQDIFSDELKKIKDQS NDYD  LPS PE  DVLWEYEGIQDAY+GEGE+ILL
Sbjct: 19  QDFVKSAFQDIFSDELKKIKDQSLNDYDNKLPSAPECDDVLWEYEGIQDAYEGEGEEILL 78

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDL+VD+RQK                 SEGPIVTWEDEEDEFLARAVYEHMQL
Sbjct: 79  EMQRIFYEDLDVDVRQKG----------------SEGPIVTWEDEEDEFLARAVYEHMQL 138

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           NSEKV +K WCPICKQGEL ENN  IHCTHCGL+L+K NEVT+D+L  RLADVHAEHLDR
Sbjct: 139 NSEKVFEKFWCPICKQGELLENNRSIHCTHCGLQLSKANEVTMDLLRSRLADVHAEHLDR 198

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKP FCVE RF+ITALYISCEGC TFE
Sbjct: 199 GCRLKPMFCVENRFDITALYISCEGCGTFE 212

[Close]

BLAST of CmUC01G013920 vs. ExPASy TrEMBL
Match: A0A6J1C935 (uncharacterized protein LOC111008573 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008573 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 7.4e-90
Identity = 164/210 (78.10%), Postives = 176/210 (83.81%), Query Frame = 0


Query: 111 EDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEYEGIQDAYQGEGEDILL 170
           +DF+KSAFQDIFSDELKKIKDQS NDYD  LPS PE  DVLWEYEGIQDAY+GEGE+ILL
Sbjct: 91  QDFVKSAFQDIFSDELKKIKDQSLNDYDNKLPSAPECDDVLWEYEGIQDAYEGEGEEILL 150

Query: 171 EMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEHMQL 230
           EMQRIFYEDL+VD+RQK                 SEGPIVTWEDEEDEFLARAVYEHMQL
Sbjct: 151 EMQRIFYEDLDVDVRQKG----------------SEGPIVTWEDEEDEFLARAVYEHMQL 210

Query: 231 NSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEHLDR 290
           NSEKV +K WCPICKQGEL ENN  IHCTHCGL+L+K NEVT+D+L  RLADVHAEHLDR
Sbjct: 211 NSEKVFEKFWCPICKQGELLENNRSIHCTHCGLQLSKANEVTMDLLRSRLADVHAEHLDR 270

Query: 291 GCRLKPKFCVERRFNITALYISCEGCNTFE 321
           GCRLKP FCVE RF+ITALYISCEGC TFE
Sbjct: 271 GCRLKPMFCVENRFDITALYISCEGCGTFE 284

[Close]

BLAST of CmUC01G013920 vs. TAIR 10
Match: AT4G12760.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 202.6 bits (514), Expect = 6.1e-52
Identity = 105/213 (49.30%), Postives = 140/213 (65.73%), Query Frame = 0


Query: 109 EDEDFIKSAFQDIFSDELKKIKDQSGNDYDENLPSVPEAADVLWEY-EGIQDAYQGEGED 168
           + ++ I  AFQDI SDELKKI+D S N    N     +  D+LWEY EG++  Y+G+ E+
Sbjct: 60  DQKEIINCAFQDIVSDELKKIEDSSRN-LSGNKTLTEDCDDILWEYEEGLKGVYEGDSEE 119

Query: 169 ILLEMQRIFYEDLNVDLRQKAVKITILSRMFTQLFAESEGPIVTWEDEEDEFLARAVYEH 228
           ILLEMQ+IFY+DL        +  T ++  F Q        + TWEDEED++LA  V ++
Sbjct: 120 ILLEMQQIFYKDL--------LSETNVNGSFVQ--------VETWEDEEDDYLAALVSQN 179

Query: 229 MQLNSEKVLQKLWCPICKQGELQENNHFIHCTHCGLRLTKGNEVTLDILCCRLADVHAEH 288
           M LNSE+   ++WCPICK+GEL EN+  I C  C ++L KG EV L+IL  RLA+ H EH
Sbjct: 180 MCLNSEQEESQIWCPICKKGELMENHRHIDCNMCDMQLNKGEEVNLNILQERLAEAHGEH 239

Query: 289 LDRGCRLKPKFCVERRFNITALYISCEGCNTFE 321
           L RGCRLKP+F V+  +N+ ALYI+CE C TFE
Sbjct: 240 LQRGCRLKPEFSVQSVYNLKALYITCEACKTFE 255

The following BLAST results are available for this feature:

BLAST of CmUC01G013920 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99094.1	3.9e-101	76.03	uncharacterized protein E5676_scaffold248G002980 [Cucumis melo var. makuwa]	[more]
XP_038893884.1	6.2e-99	84.29	uncharacterized protein LOC120082685 isoform X1 [Benincasa hispida]	[more]
XP_031737337.1	1.7e-96	82.38	uncharacterized protein LOC101216926 isoform X4 [Cucumis sativus]	[more]
XP_011651131.1	1.7e-96	82.38	uncharacterized protein LOC101216926 isoform X1 [Cucumis sativus] >KGN64242.1 hy...	[more]
XP_008437393.1	3.8e-96	81.90	PREDICTED: uncharacterized protein LOC103482820 [Cucumis melo]	[more]

BLAST of CmUC01G013920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G013920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ40	1.9e-101	76.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTY4	8.2e-97	82.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044910 PE=4 SV=1	[more]
A0A1S3AU18	1.8e-96	81.90	uncharacterized protein LOC103482820 OS=Cucumis melo OX=3656 GN=LOC103482820 PE=...	[more]
A0A6J1C5H3	7.4e-90	78.10	uncharacterized protein LOC111008573 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C935	7.4e-90	78.10	uncharacterized protein LOC111008573 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CmUC01G013920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12760.1	6.1e-52	49.30	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028155	RPA-interacting protein, central domain	PFAM	PF14767	RPA_interact_M	coord: 116..191 e-value: 6.6E-18 score: 65.1
IPR028159	RPA-interacting protein, C-terminal domain	PFAM	PF14768	RPA_interact_C	coord: 240..320 e-value: 1.4E-18 score: 67.2
IPR028156	RPA-interacting protein	PANTHER	PTHR31742	RPA-INTERACTING PROTEIN RPAIN	coord: 101..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G013920.1	CmUC01G013920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding