Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACGTCGTTTTATCCTGCCCGCGTTTTCCTCTCACCGACCACTTTTCTACTTCTTCCTCTCTCCTTTTTCTTTTTGTCTTTTTTTTTTTTTTTTTATCCGATTATCCAATCCCGACTTTAGTTTTTTTTTTTTTTCTTCCTATTTTTAAATTGCTTATTTTATTCTTTCTTACTCTTGATTTTAGTTCCTTTTAGTATATATACTTTTAAAAAGTGACCGTTTTGGATCATTTCACTCTATTTTTGTTTAAACTTTAAGGAGACGTTTGAGGCTAAGTTGGTTATTATAGTTTATGGGGTATAATAATCAATATGTTTGAGATGTAGACTATTTTAGTATAGGTAAGAAATGATAAACACAGTAATAAATTAAAAAAAAAGAGAGAGAGAATGAGTGAAAAATAGTAAATAAATAGAAAAGAAGGGTTTTGAAATAGTATTTATTATACTTAATTGTAGGTTACAAAATAGTTGTTAAAATGAACCAAAATCGAAATTATACAATGACCAAAATGAACCAAAATTAAAGTACAATAACCTTAATGTACCAATATTGGAAAGCATAAATACCAAAAATAACATTTTGAAAGTCTTAAAACTAAAATGAATCAAAGTCGAAATTACAACAATCAAAATAGAAATTCTAAAAGTATATGAACCAAAATTAAAGTAAAATCACCGAAATGAACATTTTGAAAGAACAAGAATCAAAATGAACCAAAAGTAGAATGTACGTGCATTTGTTCCTGCGGAGAATCCTTGATTAGAGGGAGGGAGCAAGGAGAATTTTCTCCCCTTTGGCTAAATGGGGATGGGGACGGGGATTATATTCCCCATCCCCGACTCCAAACATGCCCGCCCCACCTTATTTAATTTTTTAAATATATATTTATTTATTTATTTAAAAAGAATTAAAAACTTCATACCATTCATCTTTTTCTTCTGAGTGTGTTAAAATTAAAAAAACTTAAAATATTAAACTCAATTTACCTGCTCTTTGTGAATTTAAAAACGTTCGATTTAGTTCTCTTTTTTGTTTAGGTTTAGTTTGATTTTTGGTATATCTTAGGTTTGAGATTAGGTAGTTTGATTTTTATAATTTTATAAATCTTAATTTATGCAATTTTGAAAGGTCTCTACATGATTGGAGAATTTCAATTTAATTTATAATATAGTTCAGTCAAATTTCATAAATAGTTTTTAAAGCTACTATATTCACGCGTTGTGTTTTTAACTTAGACAGAAATTGGATTTCTTAAATTAGATAATTGTCTCAATTTGTTGTGTTAAATATTTGAGGTTCAAATTACAAATTGGGATTCTTTTTAAAAACTAATGTTATTTTAATATTTATTGATAAAAATGGAGTTAAGGGGAAACTATTGACAATTTTGGGATAGTAAAATTGTGGATGGGATCCACAAGTATGGATAATCAAGGACTGGGTCCACGATTTAGGGCATTATTGTGGATTAGGTCCACAATTAAGATGCCACGCGATTGCCGAAGTAGGAATTTCTCTACTAACTTCCCGAACCAGATGACGAGACTGCCACATGTTGAGTTGACTAGCAAATTGTGGACAGAGTCCCCCCCCCCCCCCCCCCCCTTTTCCCTCTCCCAGCCAATCGCCGCCCACCGTCTACTGAACGCCGTCATCTTCTCCCTGTCATCCACCTATGGCATATGTATATACATTTTTTCCAATCATATGATAAATATCTATAGATCTAATGTTTTATTTTGTATGGATGAATGGGCTTGTAGTTCTAGAGTTTGTTTTTACCAAACAATTTGTTTTGTTTAAAATTTGGAAGATCTAGCTTGTTTTTTTACCATTAGTTTGAGTTTGAGTTTTTTTATCGTTAGTTTGGACTTCAAATTTTATTTTTGAATTGTTTGAGTGTTTGGACTTGAAAGTTTTTATTGTTGTTTGGACTGATGATGGATTGGGCTGTAGGGTTTTTTTTTTTTTTGAAAATTTGGACTCATCTCTAAAACGTAGTAACTTAGACTAATGTTTTTGGACTAATAGATTTAACATTGTAGCATCACAAGTCCAATTACAACCTTTAGATCACATTATGGGATATCCACTCAATGTCAGGTATTACTTTTTGTATATATTCATTCTCTTGTCAATTTAAGTAATAAAATATTTTAATTGTTTTATATTCATGTGTTAGATGAAGCGGTGGCTTAGCTATATCTCAACAATCAGCAAACATGTTGCTGGTATATCGACTATTATTTGATCAATTGATGTAGAATTAGGTAATAATATATTTATTTCATATACAAATGAATATTACATATTATTTTGGTTCCTAATATTAGTGTATGAGATTTCAGATCAATTGGGCGACATACACACCACATATTATGTCGTTATTGTCTGATTATTGTTAGCCCACTTATATGCTTTTATATCGTAGAGTGGCATCAGCTAGATCGGGTGTTGAGACAGTTTGATCTTCGACAAACGGTACCAACGTTGTGTTGTACACTCCTGCAACTACACCAGATTTATTTAAGAGGTAAACATGTCCAAAACTAGCGTCAAATTCATGCAAAATATATGTCCTTGTGGCATGCCCGTCATGATTGTTGTCATAAAGAGAAACTTCTAGTTTATCAGGGAAACCATAGAAAATGAATCTGCTAATTCAGGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG
mRNA sequence
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG
Coding sequence (CDS)
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG
Protein sequence
MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL
Homology
BLAST of CmUC01G012500 vs. NCBI nr
Match:
VDD65979.1 (unnamed protein product [Brassica oleracea])
HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
FGQEEET +IVAA+GYFGRLIFQYA+ + + YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match:
A5A8K9 (Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=psbA2 PE=3 SV=1)
HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ S + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFSNSRSLH 272
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match:
P07826 (Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbA1 PE=1 SV=3)
HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ + + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match:
B1XIP3 (Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=psbA3 PE=3 SV=1)
HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ + + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match:
Q8DIV4 (Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=psbA3 PE=1 SV=1)
HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ + + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match:
P48265 (Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1)
HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ + + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match:
A0A3P6HJ61 (Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
FGQEEET +IVAA+GYFGRLIFQYA+ + + YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match:
A0A287U321 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 57 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 97
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match:
A0A287U3B3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 157 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 197
BLAST of CmUC01G012500 vs. TAIR 10
Match:
ATCG00020.1 (photosystem II reaction center protein A )
HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0
Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
FGQEEET +IVAA+GYFGRLIFQYA+ + + L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLH 272
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| VDD65979.1 | 6.8e-04 | 70.27 | unnamed protein product [Brassica oleracea] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A5A8K9 | 1.3e-05 | 70.59 | Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=32972... | [more] |
| P07826 | 2.2e-05 | 67.65 | Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1... | [more] |
| B1XIP3 | 2.2e-05 | 67.65 | Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /... | [more] |
| Q8DIV4 | 2.2e-05 | 67.65 | Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=19... | [more] |
| P48265 | 2.2e-05 | 67.65 | Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A3P6HJ61 | 3.3e-04 | 70.27 | Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV... | [more] |
| A0A287U321 | 4.3e-04 | 69.05 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | [more] |
| A0A287U3B3 | 4.3e-04 | 69.05 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ATCG00020.1 | 2.0e-06 | 67.65 | photosystem II reaction center protein A | [more] |
