CmUC01G012500 (gene) Watermelon (USVL531) v1

Overview
NameCmUC01G012500
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPhotosystem II protein D1
LocationCmU531Chr01: 24831815 .. 24834713 (+)
RNA-Seq ExpressionCmUC01G012500
SyntenyCmUC01G012500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACGTCGTTTTATCCTGCCCGCGTTTTCCTCTCACCGACCACTTTTCTACTTCTTCCTCTCTCCTTTTTCTTTTTGTCTTTTTTTTTTTTTTTTTATCCGATTATCCAATCCCGACTTTAGTTTTTTTTTTTTTTCTTCCTATTTTTAAATTGCTTATTTTATTCTTTCTTACTCTTGATTTTAGTTCCTTTTAGTATATATACTTTTAAAAAGTGACCGTTTTGGATCATTTCACTCTATTTTTGTTTAAACTTTAAGGAGACGTTTGAGGCTAAGTTGGTTATTATAGTTTATGGGGTATAATAATCAATATGTTTGAGATGTAGACTATTTTAGTATAGGTAAGAAATGATAAACACAGTAATAAATTAAAAAAAAAGAGAGAGAGAATGAGTGAAAAATAGTAAATAAATAGAAAAGAAGGGTTTTGAAATAGTATTTATTATACTTAATTGTAGGTTACAAAATAGTTGTTAAAATGAACCAAAATCGAAATTATACAATGACCAAAATGAACCAAAATTAAAGTACAATAACCTTAATGTACCAATATTGGAAAGCATAAATACCAAAAATAACATTTTGAAAGTCTTAAAACTAAAATGAATCAAAGTCGAAATTACAACAATCAAAATAGAAATTCTAAAAGTATATGAACCAAAATTAAAGTAAAATCACCGAAATGAACATTTTGAAAGAACAAGAATCAAAATGAACCAAAAGTAGAATGTACGTGCATTTGTTCCTGCGGAGAATCCTTGATTAGAGGGAGGGAGCAAGGAGAATTTTCTCCCCTTTGGCTAAATGGGGATGGGGACGGGGATTATATTCCCCATCCCCGACTCCAAACATGCCCGCCCCACCTTATTTAATTTTTTAAATATATATTTATTTATTTATTTAAAAAGAATTAAAAACTTCATACCATTCATCTTTTTCTTCTGAGTGTGTTAAAATTAAAAAAACTTAAAATATTAAACTCAATTTACCTGCTCTTTGTGAATTTAAAAACGTTCGATTTAGTTCTCTTTTTTGTTTAGGTTTAGTTTGATTTTTGGTATATCTTAGGTTTGAGATTAGGTAGTTTGATTTTTATAATTTTATAAATCTTAATTTATGCAATTTTGAAAGGTCTCTACATGATTGGAGAATTTCAATTTAATTTATAATATAGTTCAGTCAAATTTCATAAATAGTTTTTAAAGCTACTATATTCACGCGTTGTGTTTTTAACTTAGACAGAAATTGGATTTCTTAAATTAGATAATTGTCTCAATTTGTTGTGTTAAATATTTGAGGTTCAAATTACAAATTGGGATTCTTTTTAAAAACTAATGTTATTTTAATATTTATTGATAAAAATGGAGTTAAGGGGAAACTATTGACAATTTTGGGATAGTAAAATTGTGGATGGGATCCACAAGTATGGATAATCAAGGACTGGGTCCACGATTTAGGGCATTATTGTGGATTAGGTCCACAATTAAGATGCCACGCGATTGCCGAAGTAGGAATTTCTCTACTAACTTCCCGAACCAGATGACGAGACTGCCACATGTTGAGTTGACTAGCAAATTGTGGACAGAGTCCCCCCCCCCCCCCCCCCCCTTTTCCCTCTCCCAGCCAATCGCCGCCCACCGTCTACTGAACGCCGTCATCTTCTCCCTGTCATCCACCTATGGCATATGTATATACATTTTTTCCAATCATATGATAAATATCTATAGATCTAATGTTTTATTTTGTATGGATGAATGGGCTTGTAGTTCTAGAGTTTGTTTTTACCAAACAATTTGTTTTGTTTAAAATTTGGAAGATCTAGCTTGTTTTTTTACCATTAGTTTGAGTTTGAGTTTTTTTATCGTTAGTTTGGACTTCAAATTTTATTTTTGAATTGTTTGAGTGTTTGGACTTGAAAGTTTTTATTGTTGTTTGGACTGATGATGGATTGGGCTGTAGGGTTTTTTTTTTTTTTGAAAATTTGGACTCATCTCTAAAACGTAGTAACTTAGACTAATGTTTTTGGACTAATAGATTTAACATTGTAGCATCACAAGTCCAATTACAACCTTTAGATCACATTATGGGATATCCACTCAATGTCAGGTATTACTTTTTGTATATATTCATTCTCTTGTCAATTTAAGTAATAAAATATTTTAATTGTTTTATATTCATGTGTTAGATGAAGCGGTGGCTTAGCTATATCTCAACAATCAGCAAACATGTTGCTGGTATATCGACTATTATTTGATCAATTGATGTAGAATTAGGTAATAATATATTTATTTCATATACAAATGAATATTACATATTATTTTGGTTCCTAATATTAGTGTATGAGATTTCAGATCAATTGGGCGACATACACACCACATATTATGTCGTTATTGTCTGATTATTGTTAGCCCACTTATATGCTTTTATATCGTAGAGTGGCATCAGCTAGATCGGGTGTTGAGACAGTTTGATCTTCGACAAACGGTACCAACGTTGTGTTGTACACTCCTGCAACTACACCAGATTTATTTAAGAGGTAAACATGTCCAAAACTAGCGTCAAATTCATGCAAAATATATGTCCTTGTGGCATGCCCGTCATGATTGTTGTCATAAAGAGAAACTTCTAGTTTATCAGGGAAACCATAGAAAATGAATCTGCTAATTCAGGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

mRNA sequence

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Coding sequence (CDS)

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTTATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Protein sequence

MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL
Homology
[Close]
BLAST of CmUC01G012500 vs. NCBI nr
Match: VDD65979.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: A5A8K9 (Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=psbA2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-05
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ S +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFSNSRSLH 272

[Close]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: P07826 (Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbA1 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: B1XIP3 (Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=psbA3 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: Q8DIV4 (Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=psbA3 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match: P48265 (Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A3P6HJ61 (Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAA+GYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A287U321 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 25 FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
          FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 57 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 97

[Close]
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match: A0A287U3B3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILYISSELLGL 67
           FGQEEET +IV A+GYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 157 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 197

[Close]
BLAST of CmUC01G012500 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAYGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAA+GYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLH 272

The following BLAST results are available for this feature:
BLAST of CmUC01G012500 vs. NCBI nr
Match NameE-valueIdentityDescription
VDD65979.16.8e-0470.27unnamed protein product [Brassica oleracea][more]
BLAST of CmUC01G012500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A5A8K91.3e-0570.59Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=32972... [more]
P078262.2e-0567.65Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1... [more]
B1XIP32.2e-0567.65Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /... [more]
Q8DIV42.2e-0567.65Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=19... [more]
P482652.2e-0567.65Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1[more]
BLAST of CmUC01G012500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3P6HJ613.3e-0470.27Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV... [more]
A0A287U3214.3e-0469.05Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1[more]
A0A287U3B34.3e-0469.05Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1[more]
BLAST of CmUC01G012500 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00020.12.0e-0667.65photosystem II reaction center protein A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC01G012500.1CmUC01G012500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009635 response to herbicide
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009536 plastid
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding