CmUC01G010880 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G010880
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CmU531Chr01: 16409802 .. 16413442 (-)
RNA-Seq Expression	CmUC01G010880
Synteny	CmUC01G010880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGTAAGTTCTCTTGGGAAACATGATTGGTGATAACTTGTAGAAATACAAGTTATGATAGTCTTTTTCTTAGATAAATAGAGATTAAATAGAGAAGCATGCGGTAAGTTATGTTAATTTTTATTAAGAAATCTTCCTTTACGTTATACTAATGTATTTTTATGAAGATAAATGATTTTACCACTTTTTGAGCCTAAAACACATGTTTTGATACAGGAATGCAAACGATGCGTTGATGACTTCTTAACGCAGGAACTAGACGATGCGTTAACAACAACTCAACGCATAACTACGCGTTAGCAACCTACGCCGCGTTGACATCGGCCAAACTATTCATGGACACATAGACGACCATTAATGCAAGGCGCTGAGAATCAAATCAGAATCTTGAGAGATTAACAGATGATTGACGAACATGATTTGTGGCTAAAGTGGTGGATCTTAATTGACCCGAGAATCACGCAATCAGGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGGTTGTTGATTCTCGGAAGAACTCCATAAGTGACAGTAGAGTTCTCTCAGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTGTTTCTATCTTAATTTTAGATTTGTGTCAAGACATTGAACTTATCGAAAATTGTATCCCATTTCATCAATATAATTATCTTCCATGTCTACTCATTTCTCTAAACTTTCGGCTTTTTACTTTCAAACCATGAGTAACTAATCACTCAAGGGTCTAGGGTTGTGTTAACATCTAACTAGGAATCATAGTGTAACTATTTCATCTTGTCAATTGCGATCTTAATCCGATGCTTATGTCCATCTGACAAATCGATATAAGTAGTAATAATCAAATTGCTCGAGAGGGTAAGTGATTATGGAACTCAATTGACAAGGGCCAAGTAGTGTTACCTGTCTATGGGGATAACCTTGGTTCTTAACACTCTCCTATGTGTTATAGACATATAACGCATAGCGGCTGACAACCGGGAGAAGAGTCGCAAGTATGAATAGAATACTACTATGCGCTTCCGACGTTAGATGTTAATCAACCCGAACCCTTTCTTTATCCATTCATTCACATCTTTAGTTGAATTTGCTGTGTCGCATGCTTCCCATCTTTCACAATTTTAGTCTAGTGTACAAACAATCACTTTCCGTAGATTAAAAACAACTCTCTCAACTATTTCTTGGTTACCACTGCAACGCATGAAATCCACATAAATACTAAATCATCATAATCCCTGTGTTCGACCTCAGACTCACCGAGAAAACCTATTCCTTTGCTTATACTTGGGTAAAGGATAGGAAAACTTGACAAGATCACCAACGCATAGTAATAGGACGAATAGCATGTTCAAAGCATGATATCTTGAACGCATAATCACATCATTTAGCACCTTGCGTTAGTACAATTTACACATACAATTACATCACACAACAACATGACACCCTTTAAGTTATGTTTCAACACTTAGAAAGAAGCTAATGGAGAATTAGTCTACATGGGCAACAATGAATCACGTAAAATCCAAGGAATTGGGTCAATCTAATTAAGATTGAAGGATGGGACAGTGAAGTTGCTTAGAATTGTCAAACATGTACCTATGCTAAAGAAGAATTTGATTTCCTTGGTTAAAAGGATTATTGAAAGACTTTGGCATACAACAAAACACAGTGAAGATATTTTGTGACAATCAAAGCACCATACATCTTTCAAAGAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGTAAAAATGGTTAGATCAAGAGGAAAAGAGTTTGCATGTGTCAGATTCAAGGTGGAGATTTATAAAAATGTGTGAATCCAACAGTAGGTTTTATGTTTCTTTCTGTTACAACCAAAAATTAACAACTTGTAACTGATTTGTATGAGTTATAAATACAAATTAGAAATAGAAATCAAGGTTACTCACATACATAGAAATTATAAAAGCTGTAAAGAGAGAAATAAAAGACTTATCTGCAAGTTTTCCTCCATGGATGTAGGCATTTTGGCCGAACCACGTATATCTTGTGTGTTCATCATCATCTTCTTCTTCCCTTTCTTTATTTTATACATGCAACAAATCTTTTCTTCAGTTTTGACCTCAAAATCGCCATTGATATTCAGAAGAAAAGAAAAGAATGAAGGGTTAAGGCTGAGAGCAAGAGAATCAGAAAGCAAAGAGGGAAAGAAAAGTGAAAAAATAAACTTTCAGATCAATTTTTTCTTTCTTTCAAAATCGGTAGTAGAGTGCTTCCACGTGGTTGACATTCAAAGCATTGGCGTGGTTGATTTTTAATCTTTCATTTTACCTACCTCAAGCCCACTTCCTTTTTCGAGCTTCTTTATACTATTTTGGGCCTAAAAATTTGCATTCGAGCCCAACATCTTCCTTTGTTAATGTCGCCCAAAAAAAGGACAGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAGTTAGAATCAATAAAAAGATGGCCCAAACTCTCAGAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA

mRNA sequence

ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA

Coding sequence (CDS)

ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA

Protein sequence

MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKNALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNEDHKLKTKIRCNYRKKKGHLMRDCYSLKRKNQEKEKDAKGKQPKASIVEGSYFYSDALASTRDKANQARWTHSINLAANQVDLPLIADVSSIKGQLCEMRKDFSRRRIARKRRVFPPPDHFTAEPHASIWATQDIDAFPAFFLINPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTKLVLKLKLLKCLELINFDLPEKGQARILLPQAQVETLATFYLNRGDEEEVVGDGTTSRFARSVARLVTQPLSAIIASTKNSIILKNYNLNPLFRGAPNTYVANSVMATPETIINAQLLS

Homology

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BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-31
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 0


Query: 2   FLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKN 61
           FLRE+FFT+KMD A+SLT+NL+EFK +  +F+S+G+ +G++NEA++LLNSLPE +++VK 
Sbjct: 102 FLRERFFTYKMDPAKSLTDNLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKT 161

Query: 62  ALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNEDH 121
           ALKY RE ITT AIISA+ + ELEL  TKK+QP  E  F K  +        K     + 
Sbjct: 162 ALKYGRERITTYAIISAVSVKELELQMTKKDQPRGEGFFPKGNN--------KTMGRANR 221

Query: 122 KLKTKIRCNYRKKKGHLMRDCYSLKRKNQEKEKDAKGKQPKASIVEGSYFYSDALAST 180
            ++  IR + +K       DCY+LKRK  ++ K   GKQ +A++ E S  YSDALA+T
Sbjct: 222 TMEMCIRDSMKK-------DCYALKRKLNQQNKG--GKQTEAAVGENSLVYSDALAAT 262

[Close]

BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-24
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVK 60
           M+L EKFFTFKMDS+++LT N DEFKKIV EFK+LGEKL D NEAYVL NSLPE+Y+E+K
Sbjct: 85  MYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLGEKLSDKNEAYVLPNSLPESYKEIK 144

Query: 61  NALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNED 120
           NALKY R+S +T  IISAL+  ELEL   +K  P+ E +    + +  + KGG  +  +D
Sbjct: 145 NALKYGRDSRSTYTIISALRTRELELQIDRKNHPNGEGMLDAIRCE-YRGKGGTLEVLKD 204

Query: 121 HKL 124
            K+
Sbjct: 205 TKV 206

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BLAST of CmUC01G010880 vs. NCBI nr
Match: KAA0065687.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08214.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-24
Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 2   FLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKN 61
           ++RE+FFTFKMD  +SL ENL EFKK+  +FK LG+K+GD+NE+++LLNSLPEAY+EVK 
Sbjct: 19  YVRERFFTFKMDDNKSLIENLGEFKKLSSDFKELGDKIGDENESFILLNSLPEAYKEVKM 78

Query: 62  ALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVK 103
           AL+Y R+ ITTG +ISA++  EL+L++ +++Q + E LF K
Sbjct: 79  ALRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFSK 119

[Close]

BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-24
Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 2   FLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKN 61
           FLRE+FFT+KMD+A+SLT+ L+EFK++  EF+S+G  +G++NEA++LLNSLPE++++ K 
Sbjct: 102 FLRERFFTYKMDAAKSLTDILNEFKRLSSEFRSIGYNIGEENEAFILLNSLPESFKDAKT 161

Query: 62  ALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKG 113
           A+KY RE ITT AIISA+++ ELEL  +KK Q   E LF K K+K N  KG
Sbjct: 162 AIKYGRERITTEAIISAVRVRELELQMSKKGQQEGEGLFSKGKNK-NSRKG 211

[Close]

BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038875093.1 (uncharacterized protein LOC120067620 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-23
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 2   FLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKN 61
           FLRE+FFT+KM +A+SLT+NL+E K++  EF+S+ + +G++NEA++LLNSL E++++VK 
Sbjct: 84  FLRERFFTYKMHAAKSLTDNLNELKRLSYEFRSIRDNIGEENEAFILLNSLLESFKDVKT 143

Query: 62  ALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNED 121
           A+KY RE ITT AIISA+K+ ELEL  +KK+Q   + LF K K+K N   G  +Q+N D
Sbjct: 144 AMKYGRERITTEAIISAVKVRELELQMSKKDQQGGDCLFSKGKNKNN---GKGKQNNGD 199

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BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-09
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 263  NPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTKLVLKLKLLKCLELI 321
            N  YH RTKHID++YH++R+ ++   ++VLK+ T+EN ADMLTK+V + K   C EL+
Sbjct: 1266 NSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELV 1323

HSP 2 Score: 50.8 bits (120), Expect = 4.3e-05
Identity = 39/178 (21.91%), Postives = 85/178 (47.75%), Query Frame = 0


Query: 1   MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVK 60
           ++L+++ +   M    +   +L+ F  ++ +  +LG K+ ++++A +LLNSLP +Y+ + 
Sbjct: 101 LYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLA 160

Query: 61  NALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKG-------- 120
             + + + +I    + SAL +NE      KK +   + L  + + +  Q           
Sbjct: 161 TTILHGKTTIELKDVTSALLLNE---KMRKKPENQGQALITEGRGRSYQRSSNNYGRSGA 220

Query: 121 -GKQQSNEDHKLKTKIRCNYRKKKGHLMRDCYSLKRKNQEKEKDAKGKQPKASIVEGS 170
            GK ++    +++    CN   + GH  RDC +  RK + +    K     A++V+ +
Sbjct: 221 RGKSKNRSKSRVRNCYNCN---QPGHFKRDCPN-PRKGKGETSGQKNDDNTAAMVQNN 271

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BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-05
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 259  FFLINPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTK 307
            +   NP +H+R KHI I YHF+R++++ G + V+ V T + +AD LTK
Sbjct: 1397 YLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1444

[Close]

BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-05
Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 259  FFLINPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTK 307
            +   NP +H+R KHI + YHF+R++++ G + V+ V T + +AD LTK
Sbjct: 1380 YLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1427

[Close]

BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 6.2e-04
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 263  NPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTK 307
            NP  H R KHIDIKYHF R++++   + +  + T   +AD+ TK
Sbjct: 1341 NPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1384

HSP 2 Score: 44.7 bits (104), Expect = 3.1e-03
Identity = 38/166 (22.89%), Postives = 82/166 (49.40%), Query Frame = 0


Query: 3   LREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKNA 62
           LR++  + K+ S  SL  +   F +++ E  + G K+ + ++   LL +LP  Y+ +  A
Sbjct: 99  LRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITA 158

Query: 63  LK-YDRESITTGAIISALKINELELHATKKE-QPSVERLFVKSKDKPNQSKGGKQQSNED 122
           ++    E++T   + + L   E+++     +    V    V + +   ++   K +  + 
Sbjct: 159 IETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKP 218

Query: 123 HKL-----KTKIRCNYRKKKGHLMRDCYSLKR----KNQEKEKDAK 158
            K+     K K++C++  ++GH+ +DC+  KR    KN+E EK  +
Sbjct: 219 KKIFKGNSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQ 264

[Close]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.7e-25
Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 2   FLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKN 61
           ++RE+FFTFKMD  +SL ENL EFKK+  +FK LG+K+GD+NE+++LLNSLPEAY+EVK 
Sbjct: 19  YVRERFFTFKMDDNKSLIENLGEFKKLSSDFKELGDKIGDENESFILLNSLPEAYKEVKM 78

Query: 62  ALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVK 103
           AL+Y R+ ITTG +ISA++  EL+L++ +++Q + E LF K
Sbjct: 79  ALRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFSK 119

[Close]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-21
Identity = 60/142 (42.25%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 1   MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVK 60
           ++++EKFF +KMD ++SL ENLDEF+KI+++  ++GEK+ D+N+A +LLNSLPE Y EVK
Sbjct: 100 IYIKEKFFGYKMDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVK 159

Query: 61  NALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNED 120
            A+KY R+S+    ++ ALK   LE+   KKE    E L  + + +    KG ++ S   
Sbjct: 160 AAIKYGRDSLNMSIMLDALKTRNLEI---KKECKDGELLMARRRSEKKSWKGKERSSRSK 219

Query: 121 HKLKTKIRCNYRKKKGHLMRDC 143
            K K++ +C    K+GHL ++C
Sbjct: 220 SKGKSR-KCFLCHKEGHLKKNC 237

[Close]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-21
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 0


Query: 1   MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVK 60
           ++++EKFF +KMD ++SL ENLDEF+KIV++  ++GEK+ D+N+A +LLNSLPE Y EVK
Sbjct: 100 IYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVK 159

Query: 61  NALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNED 120
            A+KY R+S+T   ++ ALK   LE+   KKE+   E L  + + +    KG ++     
Sbjct: 160 AAIKYGRDSLTMSIVLDALKTRNLEI---KKERKDGELLMARGRSEKKSWKGKERSFRSK 219

Query: 121 HKLKTKIRCNYRKKKGHLMRDC-YSLKRKNQEKEKDAKGKQPKASIVEG 169
            K K++ +C    K+GH  ++C  +  R+    E +       A I +G
Sbjct: 220 SKGKSR-KCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG 264

[Close]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-06
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 263  NPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTK 307
            NP +H R+KHID+K+H++R+ I   +VE++KVHT EN++DMLTK
Sbjct: 1234 NPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHTVENLSDMLTK 1277

HSP 2 Score: 111.3 bits (277), Expect = 9.9e-21
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 0


Query: 1   MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVK 60
           ++++EKFF +KMD ++SL ENLDEF+KIV++  ++GEK+ D+N+A +LLNSLPE Y EVK
Sbjct: 100 IYIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVK 159

Query: 61  NALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNED 120
            A+KY R+S+T   ++ ALK   LE+   KKE+   E L  + + +    KG ++     
Sbjct: 160 AAIKYGRDSLTMSIVLDALKTRNLEI---KKERKDGELLMARGRSEKKSWKGKERSFRSK 219

Query: 121 HKLKTKIRCNYRKKKGHLMRDC-YSLKRKNQEKEKDAKGKQPKASIVEG 169
            K K++ +C    K+GH  ++C  +  R+    E +       A I +G
Sbjct: 220 SKGKSR-KCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDG 264

[Close]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 263  NPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTKLVLKLKLLKCLELIN 322
            NP +H R+KHID+K+H++R+ I   +VE++KVHT EN++DMLTK +   +    L+ +N
Sbjct: 1282 NPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHTVENLSDMLTKALSAHRFKYLLDELN 1340

HSP 2 Score: 109.4 bits (272), Expect = 3.8e-20
Identity = 69/179 (38.55%), Postives = 103/179 (57.54%), Query Frame = 0


Query: 4   REKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKNAL 63
           +EKFF +KMD ++SL ENLDEF+KI+++  ++GEK+ D+N+A +LLNSLPE Y EVK A+
Sbjct: 99  KEKFFRYKMDQSKSLEENLDEFQKIIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAI 158

Query: 64  KYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNEDHKL 123
           KY R+S+T   ++ ALK   LE+   KKE+   E L  + + +    KG ++ S    K 
Sbjct: 159 KYGRDSLTMSIVLDALKTRNLEI---KKERKDGELLMARGRSEKKSWKGKERSSRS--KS 218

Query: 124 KTKIRCNYRKKKGHLMRDC-YSLKRKNQEKEKDAKGKQPKASIVEGSYFYSDALASTRD 182
           K K R  +   KGH  ++C  +  R+    E +       A I +G       + S RD
Sbjct: 219 KGKSRKCFLCHKGHFKKNCPLNKSREASTSEANVTDGYNFAEITDGYESAEVLMVSHRD 272

The following BLAST results are available for this feature:

BLAST of CmUC01G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885928.1	1.2e-31	48.31	uncharacterized protein LOC120076236 [Benincasa hispida]	[more]
XP_038896323.1	1.1e-24	56.91	uncharacterized protein LOC120084587 [Benincasa hispida]	[more]
KAA0065687.1	1.8e-24	57.43	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038890043.1	3.1e-24	56.76	uncharacterized protein LOC120079747 [Benincasa hispida]	[more]
XP_038875093.1	2.0e-23	52.94	uncharacterized protein LOC120067620 [Benincasa hispida]	[more]

BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-09	50.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.5e-05	43.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.5e-05	41.67	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.2e-04	43.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAI4	8.7e-25	57.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CG50	5.8e-21	42.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DNU1	9.9e-21	38.46	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3DNU1	5.3e-06	56.82	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	2.0e-05	45.76	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CmUC01G010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..83 e-value: 1.4E-14 score: 54.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..126
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 263..303 e-value: 2.40573E-18 score: 79.0493

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G010880.1	CmUC01G010880.1	mRNA