CmUC01G010880 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGTAAGTTCTCTTGGGAAACATGATTGGTGATAACTTGTAGAAATACAAGTTATGATAGTCTTTTTCTTAGATAAATAGAGATTAAATAGAGAAGCATGCGGTAAGTTATGTTAATTTTTATTAAGAAATCTTCCTTTACGTTATACTAATGTATTTTTATGAAGATAAATGATTTTACCACTTTTTGAGCCTAAAACACATGTTTTGATACAGGAATGCAAACGATGCGTTGATGACTTCTTAACGCAGGAACTAGACGATGCGTTAACAACAACTCAACGCATAACTACGCGTTAGCAACCTACGCCGCGTTGACATCGGCCAAACTATTCATGGACACATAGACGACCATTAATGCAAGGCGCTGAGAATCAAATCAGAATCTTGAGAGATTAACAGATGATTGACGAACATGATTTGTGGCTAAAGTGGTGGATCTTAATTGACCCGAGAATCACGCAATCAGGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGGTTGTTGATTCTCGGAAGAACTCCATAAGTGACAGTAGAGTTCTCTCAGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTGTTTCTATCTTAATTTTAGATTTGTGTCAAGACATTGAACTTATCGAAAATTGTATCCCATTTCATCAATATAATTATCTTCCATGTCTACTCATTTCTCTAAACTTTCGGCTTTTTACTTTCAAACCATGAGTAACTAATCACTCAAGGGTCTAGGGTTGTGTTAACATCTAACTAGGAATCATAGTGTAACTATTTCATCTTGTCAATTGCGATCTTAATCCGATGCTTATGTCCATCTGACAAATCGATATAAGTAGTAATAATCAAATTGCTCGAGAGGGTAAGTGATTATGGAACTCAATTGACAAGGGCCAAGTAGTGTTACCTGTCTATGGGGATAACCTTGGTTCTTAACACTCTCCTATGTGTTATAGACATATAACGCATAGCGGCTGACAACCGGGAGAAGAGTCGCAAGTATGAATAGAATACTACTATGCGCTTCCGACGTTAGATGTTAATCAACCCGAACCCTTTCTTTATCCATTCATTCACATCTTTAGTTGAATTTGCTGTGTCGCATGCTTCCCATCTTTCACAATTTTAGTCTAGTGTACAAACAATCACTTTCCGTAGATTAAAAACAACTCTCTCAACTATTTCTTGGTTACCACTGCAACGCATGAAATCCACATAAATACTAAATCATCATAATCCCTGTGTTCGACCTCAGACTCACCGAGAAAACCTATTCCTTTGCTTATACTTGGGTAAAGGATAGGAAAACTTGACAAGATCACCAACGCATAGTAATAGGACGAATAGCATGTTCAAAGCATGATATCTTGAACGCATAATCACATCATTTAGCACCTTGCGTTAGTACAATTTACACATACAATTACATCACACAACAACATGACACCCTTTAAGTTATGTTTCAACACTTAGAAAGAAGCTAATGGAGAATTAGTCTACATGGGCAACAATGAATCACGTAAAATCCAAGGAATTGGGTCAATCTAATTAAGATTGAAGGATGGGACAGTGAAGTTGCTTAGAATTGTCAAACATGTACCTATGCTAAAGAAGAATTTGATTTCCTTGGTTAAAAGGATTATTGAAAGACTTTGGCATACAACAAAACACAGTGAAGATATTTTGTGACAATCAAAGCACCATACATCTTTCAAAGAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGTAAAAATGGTTAGATCAAGAGGAAAAGAGTTTGCATGTGTCAGATTCAAGGTGGAGATTTATAAAAATGTGTGAATCCAACAGTAGGTTTTATGTTTCTTTCTGTTACAACCAAAAATTAACAACTTGTAACTGATTTGTATGAGTTATAAATACAAATTAGAAATAGAAATCAAGGTTACTCACATACATAGAAATTATAAAAGCTGTAAAGAGAGAAATAAAAGACTTATCTGCAAGTTTTCCTCCATGGATGTAGGCATTTTGGCCGAACCACGTATATCTTGTGTGTTCATCATCATCTTCTTCTTCCCTTTCTTTATTTTATACATGCAACAAATCTTTTCTTCAGTTTTGACCTCAAAATCGCCATTGATATTCAGAAGAAAAGAAAAGAATGAAGGGTTAAGGCTGAGAGCAAGAGAATCAGAAAGCAAAGAGGGAAAGAAAAGTGAAAAAATAAACTTTCAGATCAATTTTTTCTTTCTTTCAAAATCGGTAGTAGAGTGCTTCCACGTGGTTGACATTCAAAGCATTGGCGTGGTTGATTTTTAATCTTTCATTTTACCTACCTCAAGCCCACTTCCTTTTTCGAGCTTCTTTATACTATTTTGGGCCTAAAAATTTGCATTCGAGCCCAACATCTTCCTTTGTTAATGTCGCCCAAAAAAAGGACAGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAGTTAGAATCAATAAAAAGATGGCCCAAACTCTCAGAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA ATGTTTCTGAGAGAGAAGTTCTTCACATTCAAGATGGATTCGGCTAGATCACTTACTGAAAATTTAGATGAGTTTAAGAAGATAGTAATTGAATTCAAGAGTCTTGGTGAGAAACTAGGGGATGACAATGAAGCCTATGTTCTATTGAATTCCCTTCCAGAAGCATATGAAGAGGTAAAGAATGCTTTAAAATACGACAGAGAGTCAATTACCACTGGTGCAATAATTTCAGCTCTTAAAATCAATGAATTAGAGCTTCATGCTACTAAGAAAGAGCAGCCTAGTGTGGAAAGGCTATTTGTTAAGAGCAAGGACAAACCAAATCAGTCTAAGGGTGGTAAACAACAGTCTAATGAGGATCATAAGCTTAAGACGAAGATAAGGTGCAACTATCGCAAGAAGAAGGGCCACCTCATGAGAGATTGCTACAGCTTAAAGAGGAAAAATCAAGAAAAAGAGAAAGATGCTAAGGGGAAACAACCTAAAGCTTCTATAGTGGAAGGCTCTTATTTCTACTCCGATGCACTAGCTTCTACAAGAGACAAGGCCAACCAAGCGAGATGGACGCATAGTATCAATCTCGCCGCCAATCAAGTAGATTTGCCATTAATTGCGGACGTATCATCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGACTTCAGCCGGAGACGAATAGCTCGAAAGAGAAGAGTCTTCCCTCCGCCGGACCACTTCACAGCAGAACCTCACGCTTCCATCTGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTATTAATCCTCAGTATCATACAAGAACAAAGCATATAGACATAAAGTACCATTTCGTGAGAGATAAAATAGAAGGAGGAGAGGTAGAAGTGCTGAAAGTTCATACCTCTGAAAATGTTGCCGACATGCTAACCAAACTAGTGTTGAAGCTAAAGCTGCTCAAGTGTCTCGAGCTGATCAACTTTGACCTGCCAGAGAAAGGGCAAGCTCGAATTCTTCTCCCTCAAGCCCAAGTCGAAACTCTGGCAACATTTTATCTAAATAGAGGGGACGAGGAAGAGGTTGTGGGCGATGGAACAACAAGTCGATTTGCTAGGTCTGTGGCAAGGTTGGTCACACAGCCGCTATCTGCTATAATCGCTTCAACAAAGAATTCAATAATCCTAAAAAATTACAATCTTAATCCACTCTTTCGAGGAGCACCCAACACTTATGTGGCAAACTCGGTCATGGCTACGCCTGAGACTATCATCAACGCCCAACTGCTAAGCTGA MFLREKFFTFKMDSARSLTENLDEFKKIVIEFKSLGEKLGDDNEAYVLLNSLPEAYEEVKNALKYDRESITTGAIISALKINELELHATKKEQPSVERLFVKSKDKPNQSKGGKQQSNEDHKLKTKIRCNYRKKKGHLMRDCYSLKRKNQEKEKDAKGKQPKASIVEGSYFYSDALASTRDKANQARWTHSINLAANQVDLPLIADVSSIKGQLCEMRKDFSRRRIARKRRVFPPPDHFTAEPHASIWATQDIDAFPAFFLINPQYHTRTKHIDIKYHFVRDKIEGGEVEVLKVHTSENVADMLTKLVLKLKLLKCLELINFDLPEKGQARILLPQAQVETLATFYLNRGDEEEVVGDGTTSRFARSVARLVTQPLSAIIASTKNSIILKNYNLNPLFRGAPNTYVANSVMATPETIINAQLLS Homology
BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida]) HSP 1 Score: 148.7 bits (374), Expect = 1.2e-31 Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 0
BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida]) HSP 1 Score: 125.6 bits (314), Expect = 1.1e-24 Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 0
BLAST of CmUC01G010880 vs. NCBI nr
Match: KAA0065687.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08214.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 124.8 bits (312), Expect = 1.8e-24 Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0
BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida]) HSP 1 Score: 124.0 bits (310), Expect = 3.1e-24 Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = 0
BLAST of CmUC01G010880 vs. NCBI nr
Match: XP_038875093.1 (uncharacterized protein LOC120067620 [Benincasa hispida]) HSP 1 Score: 121.3 bits (303), Expect = 2.0e-23 Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.7e-09 Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 0
HSP 2 Score: 50.8 bits (120), Expect = 4.3e-05 Identity = 39/178 (21.91%), Postives = 85/178 (47.75%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 1.5e-05 Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 2.5e-05 Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 47.0 bits (110), Expect = 6.2e-04 Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 0
HSP 2 Score: 44.7 bits (104), Expect = 3.1e-03 Identity = 38/166 (22.89%), Postives = 82/166 (49.40%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 8.7e-25 Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3CG50 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00150 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 5.8e-21 Identity = 60/142 (42.25%), Postives = 94/142 (66.20%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 9.9e-21 Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.3e-06 Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 0
HSP 2 Score: 111.3 bits (277), Expect = 9.9e-21 Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 0
BLAST of CmUC01G010880 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
HSP 2 Score: 109.4 bits (272), Expect = 3.8e-20 Identity = 69/179 (38.55%), Postives = 103/179 (57.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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