Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGGTCTGATTGGAATGCTTCGCTAAATTTTGAGAATTTAAATCTAGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAAAGTTCGGGTAGGCAAACCTATAGCTGACACTATGATCAAAAGAGGATGAGGTTTTAAATACCTTGAAGAATTTTAGAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTTGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGGTAAATCAGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA
mRNA sequence
ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAAAGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA
Coding sequence (CDS)
ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAAAGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA
Protein sequence
MPLSPVREPTFFERVFLPLCFQGRIKAEVSKINAAITYWAIWNDRNKVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPCNALVAL
Homology
BLAST of CmUC01G008550 vs. NCBI nr
Match:
XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])
HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 53/149 (35.57%), Postives = 67/149 (44.97%), Query Frame = 0
Query: 60 KLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQ--------------HEAPLAEFLA 119
+ W P +KLNVDAAW P S+G AI+RD+Q + PLAE
Sbjct: 54 RTWSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFV 113
Query: 120 VKEGLRLAIPFRQKKLIVESD-------------SD----CWFNEIRDLFDGFASVSFTY 178
V +GLRL KK+IV+SD SD W EI ++ F ++F Y
Sbjct: 114 VLQGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEIWEISIVFYPINFAY 173
BLAST of CmUC01G008550 vs. NCBI nr
Match:
XP_042988669.1 (uncharacterized protein LOC122316201 [Carya illinoinensis])
HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 61/209 (29.19%), Postives = 85/209 (40.67%), Query Frame = 0
Query: 36 ITYWAIWNDRNKVRAKEAK-------------KLEITKL---------------WQRPSI 95
+ W IWN RNK ++A K E TK+ W P I
Sbjct: 41 VVAWGIWNRRNKFIYEDASLNINTAVNNALSLKQEYTKVQVFPGFDKRINHVVYWHPPPI 100
Query: 96 GTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLA--------------EFLAVKEGLRLA 155
G LKLNVD A D S G+G ILRDH + +A E + + GL+L
Sbjct: 101 GCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASKVKREVSSVEFIEAITLLRGLQLC 160
Query: 156 IPFRQKKLIVESDS-----------------DCWFNEIRDLFDGFASVSFTYCNRGSNGT 186
+ K+I+ESDS D +IR L GF + +R NG
Sbjct: 161 AQWGVPKIILESDSLILVNCLNEDVECLTEFDFLLQDIRRLMHGFEETRLEHVHRLGNGA 220
BLAST of CmUC01G008550 vs. NCBI nr
Match:
CAA7041153.1 (unnamed protein product [Microthlaspi erraticum])
HSP 1 Score: 79.0 bits (193), Expect = 5.3e-11
Identity = 54/203 (26.60%), Postives = 89/203 (43.84%), Query Frame = 0
Query: 21 FQGR---IKAEVSKINAAITYWAIWNDRNKVRAKEAKKLEITKLWQRPSIGTLKLNVDAA 80
FQG+ ++ + ++ WA + ++ + W+RP G +K N D A
Sbjct: 567 FQGKDYSVQETLQRVQEDAEEWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGA 626
Query: 81 WILDPPSTGLGAILRDHQHEAPL--------------AEFLAVKEGLRLAIPFRQKKLIV 140
W + GLG ++R+ + + AE A++ +R F +K++
Sbjct: 627 WPKEGAKCGLGWVMRNQEGKVMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVF 686
Query: 141 ESDS----------DCW------FNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSC 190
ESDS + W NEIR L F V+F + +R NG ADR+AK A S
Sbjct: 687 ESDSKELINMINEAEEWPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSF 746
BLAST of CmUC01G008550 vs. NCBI nr
Match:
XP_042972859.1 (uncharacterized protein LOC122304666 [Carya illinoinensis])
HSP 1 Score: 78.6 bits (192), Expect = 6.9e-11
Identity = 61/212 (28.77%), Postives = 86/212 (40.57%), Query Frame = 0
Query: 36 ITYWAIWNDRNK-------------VRAKEAKKLEITKL---------------WQRPSI 95
+ W +WN RNK V + K E TK+ W P I
Sbjct: 37 VVAWGLWNRRNKFIYEDVSLNINTAVNNALSLKQEYTKVQVFHEFDKRINYVVYWHLPPI 96
Query: 96 GTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLA--------------EFLAVKEGLRLA 155
G LKLNVD A D S G+G ILRDH + +A E +A+ GL+L
Sbjct: 97 GCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASNVEREVSSAVFIEAIALLRGLQLC 156
Query: 156 IPFRQKKLIVESDS-----------------DCWFNEIRDLFDGFASVSFTYCNRGSNGT 189
+ + K+I+ESDS D +IR L GF + +R NG
Sbjct: 157 VQWGVPKIILESDSLILVNCLNENSECLTEFDFILQDIRRLMHGFEETRLEHVHRLGNGA 216
BLAST of CmUC01G008550 vs. NCBI nr
Match:
KAG6693248.1 (hypothetical protein I3842_10G159900, partial [Carya illinoinensis])
HSP 1 Score: 76.6 bits (187), Expect = 2.6e-10
Identity = 59/204 (28.92%), Postives = 83/204 (40.69%), Query Frame = 0
Query: 36 ITYWAIWNDRNKVRAKEAK-------------KLEITKL---------------WQRPSI 95
+ W +WN RNK ++ K E TK+ W P I
Sbjct: 527 VVAWRLWNRRNKFIYEDVSLNINTAVNNALPLKQEYTKVQVFHGFDKRINHVVYWHPPPI 586
Query: 96 GTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLA--------------EFLAVKEGLRLA 155
G LKLNVD A D S G+G ILRDH + +A E +A+ GL+L
Sbjct: 587 GCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASKVEREVSSAVFIEAIALLRGLQLC 646
Query: 156 IPFRQKKLIVESDS-----------------DCWFNEIRDLFDGFASVSFTYCNRGSNGT 181
+ + K+I+ESDS D +IR L GF + +R NG
Sbjct: 647 VQWGVPKIILESDSLILVNCLNEDSECLTEFDFILQDIRRLMHGFEETRLEHVHRLGNGA 706
BLAST of CmUC01G008550 vs. ExPASy TrEMBL
Match:
A0A6D2JVB2 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 2.5e-11
Identity = 54/203 (26.60%), Postives = 89/203 (43.84%), Query Frame = 0
Query: 21 FQGR---IKAEVSKINAAITYWAIWNDRNKVRAKEAKKLEITKLWQRPSIGTLKLNVDAA 80
FQG+ ++ + ++ WA + ++ + W+RP G +K N D A
Sbjct: 567 FQGKDYSVQETLQRVQEDAEEWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGA 626
Query: 81 WILDPPSTGLGAILRDHQHEAPL--------------AEFLAVKEGLRLAIPFRQKKLIV 140
W + GLG ++R+ + + AE A++ +R F +K++
Sbjct: 627 WPKEGAKCGLGWVMRNQEGKVMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVF 686
Query: 141 ESDS----------DCW------FNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSC 190
ESDS + W NEIR L F V+F + +R NG ADR+AK A S
Sbjct: 687 ESDSKELINMINEAEEWPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSF 746
BLAST of CmUC01G008550 vs. ExPASy TrEMBL
Match:
Q10IA6 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g36000 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 0
Query: 46 NKVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDH----------- 105
N + + + K +I W++P G L +NVDAA+ D S G+G +LRDH
Sbjct: 1006 NYMLSNKKGKTKIQNGWKKPPEGMLMINVDAAFDFDSGSGGIGVVLRDHLGACVAASQAF 1065
Query: 106 -QH--EAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIRDLFDGFASVSFTYCNR 165
H +AP+AE A+++GL LA K +I+ ++DGF ++S +CNR
Sbjct: 1066 LPHVLDAPMAEAFALRDGLSLAQHIGAKNVIL-------------MWDGFGTISIEHCNR 1125
Query: 166 GSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPC 193
SN A +A+ K + F ++ W + + L + C
Sbjct: 1126 NSNQVAHELARCLIGRKSSLVSFAAFQPWKCDSIPLPDQSC 1153
BLAST of CmUC01G008550 vs. ExPASy TrEMBL
Match:
A0A7J9DD45 (RNase H domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_021521 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 56/181 (30.94%), Postives = 76/181 (41.99%), Query Frame = 0
Query: 39 WAIWNDRNKVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQ--- 98
W WNDRN K + + K W +P +G +K+NVDA + TG+GA+ RDH
Sbjct: 147 WNNWNDRNNTVLKRKMEAVVKKRWTKPPVGCVKVNVDATVL--NGCTGVGAVARDHDGFV 206
Query: 99 -----------HEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIR--------- 158
+ AE A K GL+L +LIVESDS N +
Sbjct: 207 IGGCYNFQKTAMDISGAEVEAFKVGLKLEKNLNVGRLIVESDSAILVNAVNKRRLDITIL 266
Query: 159 --------DLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSL 189
D+F F SV + NR SN AD + K A + + + YP I N +
Sbjct: 267 GQCIRSECDVFSSFESVQVKWTNRNSNYAADFLCKLAIRNENDLYFDMEYPMDIHNIIIR 325
BLAST of CmUC01G008550 vs. ExPASy TrEMBL
Match:
A0A446K5I3 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G175360 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0
Query: 61 LWQRPSIGTLKLNVDAAWILDPPSTGLGAILRD--------------HQHEAPLAEFLAV 120
+W++P+ G +K+NVDAA+ + + GA+ RD H A AE +A+
Sbjct: 1 MWKKPTSGRVKINVDAAFSPENMTGATGAVARDDRGDFIAATSCFISHVTSAKSAEVVAI 60
Query: 121 KEGLRLAIPFRQKKLIVESDSD----------------CWFNEIRDLFDGFASVSFTYCN 180
+ GL LA+ LI+ESDS + E R L FA V +C
Sbjct: 61 RNGLILAMTIGCNSLILESDSSNAVDIINQEDYLGQEVSIYMECRHLGSDFAKVEVIHCF 120
Query: 181 RGSNGTADRIAKNARSCKINADWFFSYPSW----IVNHLSL 188
R +N AD IAKNA S + + W P + IVN L++
Sbjct: 121 REANSVADSIAKNALSTRSSMVWDEGVPDFISLQIVNDLAI 161
BLAST of CmUC01G008550 vs. ExPASy TrEMBL
Match:
A0A5J9U9H2 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36016 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 6.9e-09
Identity = 49/183 (26.78%), Postives = 78/183 (42.62%), Query Frame = 0
Query: 48 VRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPL------- 107
V+ KE + K W +P G K+NVDAA+ +D G+G I+R+ E L
Sbjct: 86 VKRKEPGNVRTIKKWVKPPCGRAKINVDAAFSVDSGRAGVGVIIRNDHGEIVLCSGRVVF 145
Query: 108 -------AEFLAVKEGLRLAIPFRQKKLIVESDSDC-------------------WFNEI 167
AE LA KEGL L + + + E +SDC E+
Sbjct: 146 NCASAEEAELLACKEGLNLGL--KWVAMPCELESDCLVVCNALKSNEENGSHYALLLREV 205
Query: 168 RDLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPCNA 198
++L V T+CNR N + +A A + W S+P ++ + ++ D CN
Sbjct: 206 KELIAELREVRITHCNRTQNRVSHILAGRASREMFSKVWLHSFPDFVASSVATD---CNP 263
BLAST of CmUC01G008550 vs. TAIR 10
Match:
AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 42/159 (26.42%), Postives = 67/159 (42.14%), Query Frame = 0
Query: 62 WQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQH---EAPLAEF---LAVKE------- 121
W P LK N DA+ +GLG ILR+ Q E + +F + +E
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164
Query: 122 -GLRLAIPFRQKKLIVESDSDC----------------WFNEIRDLFDGFASVSFTYCNR 181
++ + F KK+I E D+ + + I+ F S+ F++ +R
Sbjct: 165 WAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFESIEFSFKHR 224
Query: 182 GSNGTADRIAKNARSCKINADW--FFSYPSWIVNHLSLD 189
NG AD +AK A K N W F S P ++ +++ D
Sbjct: 225 EQNGCADFLAKQA--IKENTQWSLFHSCPYFLSPYVNND 261
BLAST of CmUC01G008550 vs. TAIR 10
Match:
AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 41.6 bits (96), Expect = 8.7e-04
Identity = 36/131 (27.48%), Postives = 54/131 (41.22%), Query Frame = 0
Query: 64 RPSIGTLKLNVDAAWILDPPSTGLGAILRD-------HQHEAP-------LAEFLAVKEG 123
RP + + + DAAW + G G ++R+ H A +AE +A+
Sbjct: 25 RPDLDRVTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLA 84
Query: 124 LRLAIPFRQKKLIVESDSDCWFNEIRD----------LFD------GFASVSFTYCNRGS 165
L+ A KL + SDS I +FD GFA VSF++ R
Sbjct: 85 LQYAQSIGITKLSMASDSQQLITAITSESPSTEFYGIIFDILNLSLGFADVSFSFVPRSE 144
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038902513.1 | 2.4e-11 | 35.57 | uncharacterized protein LOC120089172 [Benincasa hispida] | [more] |
XP_042988669.1 | 2.4e-11 | 29.19 | uncharacterized protein LOC122316201 [Carya illinoinensis] | [more] |
CAA7041153.1 | 5.3e-11 | 26.60 | unnamed protein product [Microthlaspi erraticum] | [more] |
XP_042972859.1 | 6.9e-11 | 28.77 | uncharacterized protein LOC122304666 [Carya illinoinensis] | [more] |
KAG6693248.1 | 2.6e-10 | 28.92 | hypothetical protein I3842_10G159900, partial [Carya illinoinensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6D2JVB2 | 2.5e-11 | 26.60 | Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 ... | [more] |
Q10IA6 | 2.8e-10 | 29.81 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... | [more] |
A0A7J9DD45 | 6.3e-10 | 30.94 | RNase H domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_021521... | [more] |
A0A446K5I3 | 4.1e-09 | 31.68 | RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T... | [more] |
A0A5J9U9H2 | 6.9e-09 | 26.78 | RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=E... | [more] |
Match Name | E-value | Identity | Description | |
AT5G65005.1 | 1.3e-04 | 26.42 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT4G09490.1 | 8.7e-04 | 27.48 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |