CmUC01G007850 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC01G007850
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	40S ribosomal protein S27
Location	CmU531Chr01: 8534959 .. 8539551 (+)
RNA-Seq Expression	CmUC01G007850
Synteny	CmUC01G007850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCCCTTCACTTTGTTCTGTTTCCCTTATTGAAAACATCAATATCGACCTCACCATCGCTGCTGCCACAAAAGCAGTTCTTCATGTCGTCACAACTATATCTTTTGCAGTTGTCAATCAACAGGTTGAAGCAACTACATCAGTTGTGGAAGTTGATGCTTGTGCCACAAAAATGCGTTCTCACAAATCAGCGTTGCATGCAGATGAAAGGAAATCCCAAAATCTGATCAATTTTGCAATCAACCAAAAAACGAAAACAATTAAAGAGCAATAAAATTTATAAGAAAAGATGAACAAAAATAGCAGGAACAAGAAGATGATCAAAAGAGTTCAAGAGAGTAAAGAAGAACACAAAACTTTTAAAGTGGGTTAAAAAATGTGCCTACAGTTTGAAGGATTTTATTGAAAATCAACGAAGACTGAGGGCTTACAAAATAAGTACTCACTGCTCTTGATTTCGTTTAAATTCGACATCTATTACTTATACTAAGTACGAAACAGTGGTTAAATTGTAAATGCAAGAAGTGGACTAAGAGTGAGATGTTGACTTTACAACGGGAAGTTTCTCGCAATCCCTCGCCAAAGCTGCTACCTAAATTGCCTCCACAACTAACAGTTTTGTTGTTGTCGCCTACCAACCTATTGATCCACTATCCATAGCATATTAAAATATTGTCGACAATGATGATCTACAACTTCAGCAACTTTATGTAAACCTTATGTCGATCCTTCGGCCGATGTCAACAACTGTAAATGTAAACATTCAATTTTTAAGAACAAATGGCTTGAATATTTCAAAAAAATGAAACAGATGTCGCGCAGATTATGGTTGTAACTAGCTTGATTATTCGTGCAGTAATGGAAACTAGCATCAACCTATTTAGAATGGTTGGTTGTGTTTAATTCATGCTTTCTACATTTTATTTTTATAAAATTGACTTGCAACTTTCAATCACGCTTCCATCTTTTTGTTCTTTTACGAAATTCCCAACCTATATCCTCACAAAACGATCGACCAAATCTATAGCTATTGGGGCCAACCAAAATAATTTAAAAAGAACACGAAGCTTTTAAAGTTGTTCAGCAAGTGTGCCTACATCCAATATTGAAAGGGAGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAAAGAAGACTGAAGGTTTACAAGATAAGTATTCGCTGCTTTATGTTTTGTTTAAATTCAACACCTATGTATACTAAATACGAAACATGCGTTAAATGGTAAATACACGAAATGGGCTAACAGTGAGATGTGTTGACTTCAACAGGAACGGGAAGTTTCTCACAATCCCTCGTTACAGTTGCTGCCTAGATTGCCTTTGCAACTTCTACTTTTGTTGTTGTCGCCTATCAACTTGTTGATTAGAATCTTACCCACAACTTTGATCTTCAGTAACATTATGTAAACCTTGATATTGATACTTTTGCCGACGTCTACAACTGTAAATGTAGACATTCAAATTATCAAAATAAATGGCTTGGATATTTCAAAAAATTGAAAATATTTTGCGTGGATTGTGGTTGTAACTAGCCTGACTATCCGTGTAATGATGAAAACTAACGTTGGCATGTTTATATTGGTCGACGGTTTAGATTTATGCTTTTCAATCATATATTTATGAAATTGACTCCCAATTTCTAATCATGCTTAGTTTTTGTTCTTTTACGAAATCCGCAACATCTATCCTTACAAAATGATTGACGCATCTACAACTATCAGGACCAACCAAGAATTCAACGAAAAACAAAGCTTTTTAAAGTGGTTCCGCAAACATGGCTACATCCACTATTTAAAAGGAGTTTGAAACGTAAATTATCTTTTGAAAAAAAAGGGTGTTAGGAAATTGATGGTTTTTGCAAAGGTATCGGTGTGACTGTTAGGAAATCCTGAGAAGAGAAGAGAAGAGTGAAGAAGATAGGAGGGGAGAGAAATGAAAGGTTTTTAAATTTGAGGGATAATTTGGTAATTTCACATTTATCTGAAAAAGTAAAGGGGTTAAAAAATACTTACGGTTTTAAAATAGGTCAAAAATACAAATTGTAAACTCTAAACACCCAAAATTGGAAATTACCCAATCAATCAATTAATTAATTTGAGATCAAGGGTAAAAAAGCCAGCACAAAAACCTTCCTAACAATCCCTCACGAATGGTGGGTATAATGAAAAAAAAAAAACATTTTAAAATCCATTCACAAGTAAAGAAAGGAGAACAAACTTAAACATCAATATCTTTCGATTTGAATTGATGCATAAACAACAACTTGATCAAAAGAAGTGAGGCATTTCTTAAACCTTCAATAACCGTGGTTATGACCTCCAAACATATTACTCCTTATGTTTTCTCTTTCCGTGATATAGTATATGCTATTTAGTGCCATGAACATAAAACCACGAGTATATAAATGGACAAAAATATATCCACTCTCCTCTCCTCTCCTAAAAATCTATTTAGGTATTTTTGCAACAATAATTCGAGGTTGAGTATTTTTATTTCGGGAAAAATATATTTTTGGTTCGCGAGTTTTCAAGAATGTATGCATTTGGTCTCCAAAGTTTCAATTTAGCCATTTTAGTTTCCAAGTTTTACGGAACATGTTTAAAAAGTTTGAATTTTTTCGGCTCATCTAGCCACAAAACCATTCAATAAATATTATATTTAAATTTAATAGATTTATTAGTCGACTAAATAAACACATAAGACCAAAAAGAATATTTTTGGCTTTTATTTTCTATAGGTATTCCTCGTAATTTCCTATTCCACATGCTCTCCACAAAAGCCCATCTTCTATGATCTAACTTAAGGCCCAAAATCGGCTTTCAAACTCAACAAGCCCATTTGTAAACCGCCTCACGCAAATCCCTATATATAAAGATTGAGGTTTTAGGGTTCTTGCTCTCTCGCTCTGCTGCGGTCGTGTGCTACTTTCGATTGGCTTCGCAGGATTTCCCTTCCCTCTTTCGCCGGCTCTTTTCCAGATTTTTTCAAGATGGTGAGTTCTCATTCCTCTCCTACTCGATTTATTGTGTTGTGTTTCCCGTTTCGGATCTGTTCTTTTCCATGTTTGTTTATCGAGAATTGTATTGCTGCTAAGTTTAATGTATTTAGATGTATTTTAGCCTCCGGGTTTTTGTTTGAGACACTTTGGAATGTATGGATTCATATTTGTAGAAAGAAGATGGAATATTGATACATTTGAAACCTTTGTTTACAGTAAAAGTTATGGTTGTCTTTCTGGGTTTTTTTCGATTTAATTTTGCGTTGAAGAAAGATTTGATGGTTGAGAATCATGAGGACGATATTTTGGGAGATGGGTTTGGTAGGAAGTTAGCGGAAGATTATGCTTTATAACATGGGTCGAGAATAAAGGGGATTGTTTTTCATTCTGCAATTTTTAGAGAAAAACTTTGTACCTGCAGTAAATTGAGTGGAACCATGTGACTTGAACGTATTTTCTATATGTCCTTGGCAAGTTTGAATGTTTCTTGAAAAAACAAAAAGTCAAACACTAAGTTATTCTCGTTCAAACACATGTTGGAGCGTATTGATCTCTGAGAAGTGAAAAACCAGTGGAATGCTCTTAATTGTGTTCATACTTCTCAGCTAATTTTTTGCTGATTTTGTTGATGTGTTGTACCCCATTTCTTATCAATTCAATGTTGTTTGTTTTTGCTGCAATTTTTGTGGCCTTAAAAAGGTGTATCAAATTCTTAATTCTGAAGTTGTTCAATTTGTTTTTGTATCAACAGGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTGTATGTCGTTTGTTATGATCAACTTGTCAAATTTAGCACATCTCTCTACTGTCCTGTCATCAAGTTTTCTTGGCTCAGCAGTTAATGTTTCTGCTTTTGTCTTGATTTATATAATATTCTGAGTCTCTGACAAGTCTATACTTTAATTGTGTATGTTGGCTATTTGTAGGACGTAAAGTGCCAGGGATGCTTCAACATGTAAGTTCCATCCCTTATCAGTTTGTTATATTTGTAACTCTTCTGGATTCTGCTTGAAGATGTTGTATGTTGAAATTTCTGATTGTTGTTTTCTGTCAATGAAATGCAGTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTGGGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAACTTAACTTTCTTTTATTTACTCTTTATTTTGTTTTGAAGTTGAATGTG

mRNA sequence

ATGTCTCTCCCTTCACTTTGTTCTGTTTCCCTTATTGAAAACATCAATATCGACCTCACCATCGCTGCTGCCACAAAAGCAGTTCTTCATGTCGTCACAACTATATCTTTTGCAGTTGTCAATCAACAGGTATTCCTCGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTGGGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAACTTAACTTTCTTTTATTTACTCTTTATTTTGTTTTGAAGTTGAATGTG

Coding sequence (CDS)

ATGTCTCTCCCTTCACTTTGTTCTGTTTCCCTTATTGAAAACATCAATATCGACCTCACCATCGCTGCTGCCACAAAAGCAGTTCTTCATGTCGTCACAACTATATCTTTTGCAGTTGTCAATCAACAGGTATTCCTCGTTCTACAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCATTCTTCATGGTATTCTTTTGCTTCTATTTCAATTTACCACAGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTATGCCAGCCGACGGGAGGACGTGCTAGACTCACCGAAGGTTGCTCTTTTAGGAGAAAGGGTGATTGATGATGCGGTTCCTTGTTTCTTTTTGCTGGGAAGAAATTGCAGTCTCTGTTTTGATCATGGGTATATTTATTTTTCTTGTACGGTATCAGACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAA

Protein sequence

MSLPSLCSVSLIENINIDLTIAAATKAVLHVVTTISFAVVNQQVFLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTARRSYASRREDVLDSPKVALLGERVIDDAVPCFFLLGRNCSLCFDHGYIYFSCTVSDLIMLSLLNRLYLALELSGFV

Homology

[Close]

BLAST of CmUC01G007850 vs. NCBI nr
Match: CAG1853313.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-16
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 46  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVT 105
           +VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C   FN+    +  +LLW+A T
Sbjct: 19  MVLPNDIDLLNPPAELEKRRHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQLLWFAET 78

Query: 106 ARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL 140
           AR   ASR   V  SP+ AL  E+ I+     FFL
Sbjct: 79  ARPFCASRLAGVQGSPRAALSDEKAIEPICALFFL 113

[Close]

BLAST of CmUC01G007850 vs. NCBI nr
Match: RXH79955.1 (hypothetical protein DVH24_041102 [Malus domestica])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-16
Identity = 59/92 (64.13%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 47  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLL 106
           VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM      CF   +    P  S T K L
Sbjct: 7   VLQNDIDLLHPPAELEKRKHKLKRLVQTPNSFFMDVKCQGCFSMKIICAEPPCSVTHKQL 66

Query: 107 WYAVTARRSYASRREDVLDSPKVALLGERVID 132
           W AVTARR  AS  EDV  SPKVA   ER  D
Sbjct: 67  WCAVTARRCCASLLEDVPGSPKVAPSEERETD 98

[Close]

BLAST of CmUC01G007850 vs. NCBI nr
Match: RRT50958.1 (hypothetical protein B296_00051407 [Ensete ventricosum])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-14
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 46  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAV 105
           +VL ND+DLLNPPAELEKR+HKLKRLVQSPNSFFMV    +  +  SS   T +L W+  
Sbjct: 268 MVLPNDVDLLNPPAELEKRRHKLKRLVQSPNSFFMVIPNSFVVVFSSSPPPTPRLSWFVE 327

Query: 106 TARRSYASRREDVLDSPKVALLGERVID 132
           TAR   ASR      SPK AL GER  +
Sbjct: 328 TARPCCASRLAGAQSSPKAALSGERATE 355

[Close]

BLAST of CmUC01G007850 vs. NCBI nr
Match: MBA0796973.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-14
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 45  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVT 104
           F VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFM             ATLK  WY   
Sbjct: 30  FEVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMCL-----------ATLKQWWYVGI 89

Query: 105 ARRSYASRREDVLDSPKVALLGER 129
            R  + +++E+ LDS K AL G R
Sbjct: 90  VRLFFVNQQEEELDSLKDALSGRR 102

[Close]

BLAST of CmUC01G007850 vs. NCBI nr
Match: QHO31017.1 (40S ribosomal protein [Arachis hypogaea])

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-14
Identity = 48/68 (70.59%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 46  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVTA 105
           +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFF    C    +P  SATL+  WYA TA
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFTDVKC---QVPLYSATLRPSWYAETA 60

Query: 106 RRSYASRR 114
           R+  ASR+
Sbjct: 61  RQYCASRQ 65

[Close]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 7.7e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VL +DIDLLNPPAELEK KHK KRLVQSPNSFFM   C
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL
Match: A0A498ID30 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041102 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 59/92 (64.13%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 47  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM---VFFCFYFNL----PQSSATLKLL 106
           VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM      CF   +    P  S T K L
Sbjct: 7   VLQNDIDLLHPPAELEKRKHKLKRLVQTPNSFFMDVKCQGCFSMKIICAEPPCSVTHKQL 66

Query: 107 WYAVTARRSYASRREDVLDSPKVALLGERVID 132
           W AVTARR  AS  EDV  SPKVA   ER  D
Sbjct: 67  WCAVTARRCCASLLEDVPGSPKVAPSEERETD 98

[Close]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL
Match: M0RHJ7 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 46  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FYFNLPQSSATLKLLWYAVT 105
           +VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C   FN+    +  +LLW+A T
Sbjct: 19  MVLPNDIDLLNPPAELEKRRHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQLLWFAET 78

Query: 106 ARRSYASRREDVLDSPKVALLGERVIDDAVPCFFL 140
           AR   ASR   V  SP+ AL  E+ I+     FFL
Sbjct: 79  ARPFCASRLAGVQGSPRAALSDEKAIEPICALFFL 113

[Close]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL
Match: A0A426YGV6 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00051407 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 46  LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSS--ATLKLLWYAV 105
           +VL ND+DLLNPPAELEKR+HKLKRLVQSPNSFFMV    +  +  SS   T +L W+  
Sbjct: 268 MVLPNDVDLLNPPAELEKRRHKLKRLVQSPNSFFMVIPNSFVVVFSSSPPPTPRLSWFVE 327

Query: 106 TARRSYASRREDVLDSPKVALLGERVID 132
           TAR   ASR      SPK AL GER  +
Sbjct: 328 TARPCCASRLAGAQSSPKAALSGERATE 355

[Close]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL
Match: A0A7J9GHB9 (Uncharacterized protein (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_007701 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 45  FLVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQSSATLKLLWYAVT 104
           F VLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFM             ATLK  WY   
Sbjct: 30  FEVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMCL-----------ATLKQWWYVGI 89

Query: 105 ARRSYASRREDVLDSPKVALLGER 129
            R  + +++E+ LDS K AL G R
Sbjct: 90  VRLFFVNQQEEELDSLKDALSGRR 102

[Close]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL
Match: A0A498HR82 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_025162 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 52/86 (60.47%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 47  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFYFNLPQ-SSATLKLLWYAVTA 106
           VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM          Q  S T K LW   TA
Sbjct: 7   VLQNDIDLLHPPAELEKRKHKLKRLVQTPNSFFMCDEVKTICAEQPCSVTRKQLWCVGTA 66

Query: 107 RRSYASRREDVLDSPKVALLGERVID 132
           R+  AS  E    SP+VAL  ER  D
Sbjct: 67  RQCCASLLEAEPGSPRVALSEERGTD 92

[Close]

BLAST of CmUC01G007850 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKC 39

[Close]

BLAST of CmUC01G007850 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM+  C
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRC 39

[Close]

BLAST of CmUC01G007850 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-12
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 46 LVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC 85
          +VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKC 39

The following BLAST results are available for this feature:

BLAST of CmUC01G007850 vs. NCBI nr


Match Name	E-value	Identity	Description
CAG1853313.1	2.2e-16	57.89	unnamed protein product [Musa acuminata subsp. malaccensis]	[more]
RXH79955.1	2.2e-16	64.13	hypothetical protein DVH24_041102 [Malus domestica]	[more]
RRT50958.1	2.7e-14	57.95	hypothetical protein B296_00051407 [Ensete ventricosum]	[more]
MBA0796973.1	3.6e-14	59.52	hypothetical protein [Gossypium harknessii]	[more]
QHO31017.1	6.1e-14	70.59	40S ribosomal protein [Arachis hypogaea]	[more]

BLAST of CmUC01G007850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64650	7.7e-12	89.74	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q9M2F1	7.7e-12	89.74	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q8L953	1.1e-10	84.62	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
Q96564	2.5e-10	84.62	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
P47903	2.7e-09	79.49	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of CmUC01G007850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498ID30	1.1e-16	64.13	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041102 PE=4 SV=1	[more]
M0RHJ7	1.1e-16	57.89	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1	[more]
A0A426YGV6	1.3e-14	57.95	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00051407 PE=4 SV=1	[more]
A0A7J9GHB9	1.7e-14	59.52	Uncharacterized protein (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_007...	[more]
A0A498HR82	1.2e-12	60.47	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_025162 PE=4 SV=1	[more]

BLAST of CmUC01G007850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45710.1	5.5e-13	89.74	Zinc-binding ribosomal protein family protein	[more]
AT3G61110.1	5.5e-13	89.74	ribosomal protein S27	[more]
AT3G61111.1	2.1e-12	84.62	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	7.9e-12	84.62	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 50..89 e-value: 1.0E-12 score: 49.8
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 40..84
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 40..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC01G007850.1	CmUC01G007850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome