Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGCGTGTGGTTACAGAGATGGGAAGGCGCGTGAGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAAGGAAGAGGAGTGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTGACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGGGCGGAGAAGAGGAGGGAGAGGCGGTGGGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGTTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATTTTGGATTTGGAGACAATACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGAGGGAACAAATGTGA
mRNA sequence
ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGCGTGTGGTTACAGAGATGGGAAGGCGCGTGAGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAAGGAAGAGGAGTGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTGACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGGGCGGAGAAGAGGAGGGAGAGGCGGTGGGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGTTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATTTTGGATTTGGAGACAATACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGAGGGAACAAATGTGA
Coding sequence (CDS)
ATGGATTTCGGATCCAGAAAGCGTCTTCAATGTGGTGGTTTCTTTGGAGAAGAAGCCGGAGGAGAGGGAGCCATCAGCGTAAGAGTAAAGGTATCGGCAGGGGGAGTGGAGGCGCGTGTGGTTACAGAGATGGGAAGGCGCGTGAGGGAGGAGACGGCAGTGAGGGTCGTAGCAGTGAAAAGGAGAGAAGGAAGAGGAGTGGCGGGGGAGGAAGGCGGAGGAGGGAGGGTGTTGAGAGCAGTTGCGGCAGGCGGAGCATTTGACCCAAACGAGGTCGCTGCCAGTATCAGCGACGAGGAGGAGGCTTTGGGGAGGGGTGCCAAGACGGAGGTCGACGAAGTATTGGCCGGAGCCGGTGGAGGCGCCGGAGATGAGAGGGGATTTGAGAGTGGGGTTAGGGCGAGGGGGGAGGGGGAGGGCGGAGAAGAGGAGGGAGAGGCGGTGGGTGTCGGAGGAGAGGGCTTGGGAAGGGGAGGAGAAGGGGTTTTTATGGAGGAGGGGGAGCTTCAGATAGTCGGCGGTGGCGGCATTGGCATTGGAGAGTTGTGTGAGAGAGAAGAGAAGAAGAATGAGATGGAAGAAGGGGGAAATGGAGAGCGTTGTTGGTTGCATTTTGGATTTGGAGACAATACTGAAATGCGTAAAACTAAGAAAACACGGATGAGGAGGGAACAAATGTGA
Protein sequence
MDFGSRKRLQCGGFFGEEAGGEGAISVRVKVSAGGVEARVVTEMGRRVREETAVRVVAVKRREGRGVAGEEGGGGRVLRAVAAGGAFDPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGEGGEEEGEAVGVGGEGLGRGGEGVFMEEGELQIVGGGGIGIGELCEREEKKNEMEEGGNGERCWLHFGFGDNTEMRKTKKTRMRREQM
Homology
BLAST of CmUC01G005630 vs. NCBI nr
Match:
KAF7827865.1 (glycine-rich cell wall structural protein 1.0-like [Senna tora])
HSP 1 Score: 109.4 bits (272), Expect = 4.2e-20
Identity = 78/144 (54.17%), Postives = 93/144 (64.58%), Query Frame = 0
Query: 17 EEAGGEGAISVRVKVSAGGVEARVVTEM-GRRVREETAVRVVAVKRREGRGVAGEEGGGG 76
EE G+G + V + VS V+ +VT + G RV +E A RVVA+ E GVAGEEGG G
Sbjct: 121 EEPAGDGPVRVGILVSTRAVDPGMVTVVTGFRVGDEAAGRVVAMVGGECGGVAGEEGGSG 180
Query: 77 RVLRAVAAGGAFDPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRAR 136
+ AVAAGGA DP+E+AA + DEEEAL R A +E+DEVLAGAGGGAGDE GFE G
Sbjct: 181 WAVGAVAAGGALDPDEIAAGVGDEEEALRRSADSEIDEVLAGAGGGAGDEGGFEGGAAVE 240
Query: 137 GEGEGGEEEGEAVGVGGEGLGRGG 160
G GE V VGGE +G G
Sbjct: 241 G--------GETVEVGGEKVGGRG 256
BLAST of CmUC01G005630 vs. NCBI nr
Match:
KAB8681452.1 (hypothetical protein FH972_026331 [Carpinus fangiana])
HSP 1 Score: 78.6 bits (192), Expect = 7.8e-11
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 0
Query: 14 FFGEEAGGEGAISVRVKVSAGGVE---ARVVTEMGRRVREETAVRVVAVKRREGRGVAGE 73
F GEEA G+GA+SV V V+A GVE A VV RV +E A V + EG G+AGE
Sbjct: 25 FLGEEATGKGAVSVGVLVTARGVEPEPAGVVVVGAWRVGDEPARGVEVMVGGEGGGMAGE 84
Query: 74 EGGGGRVLRAVA---AGGAFDPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERG 132
EGG G + + A GGA DP+EV A + DEEE L RGA+ + +VL GAGGG GD G
Sbjct: 85 EGGYGDLGGSGAIGFIGGALDPDEVVAGVGDEEEGLRRGAQAQGHKVLVGAGGGPGDHWG 144
BLAST of CmUC01G005630 vs. NCBI nr
Match:
KDO70110.1 (hypothetical protein CISIN_1g029800mg [Citrus sinensis])
HSP 1 Score: 71.6 bits (174), Expect = 9.6e-09
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 35 GVEARVVTEMGRRVREETAVRVVAVKRREGRGVAGEEGGGGRVLRAVAAGGAFDPNEVAA 94
GV ARVV +G E V AV REG GVAGE+GG G AVAAG A DP+EVAA
Sbjct: 57 GVIARVVARVG---DEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 116
Query: 95 SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGEGGEEEGEAVGVGGEG 154
I +EEE L RGA+ E DEVLAGAGG AG + FE E GE + +
Sbjct: 117 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 176
Query: 155 LGRGGEGVFMEEGELQIVGGGG 177
G GG F+E+ E +I GGG
Sbjct: 177 -GTGGMVSFVEKWEFEIFCGGG 179
BLAST of CmUC01G005630 vs. NCBI nr
Match:
GAY47055.1 (hypothetical protein CUMW_101650 [Citrus unshiu])
HSP 1 Score: 71.6 bits (174), Expect = 9.6e-09
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 35 GVEARVVTEMGRRVREETAVRVVAVKRREGRGVAGEEGGGGRVLRAVAAGGAFDPNEVAA 94
GV ARVV +G E V AV REG GVAGE+GG G AVAAG A DP+EVAA
Sbjct: 20 GVIARVVARVG---DEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 79
Query: 95 SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGEGGEEEGEAVGVGGEG 154
I +EEE L RGA+ E DEVLAGAGG AG + FE E GE + +
Sbjct: 80 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 139
Query: 155 LGRGGEGVFMEEGELQIVGGGG 177
G GG F+E+ E +I GGG
Sbjct: 140 -GTGGMVSFVEKWEFEIFCGGG 142
BLAST of CmUC01G005630 vs. NCBI nr
Match:
XP_011468691.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Fragaria vesca subsp. vesca])
HSP 1 Score: 64.3 bits (155), Expect = 1.5e-06
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query: 66 GVAGEEGGGGRVLRAVAAGGAFDPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDE 125
GVAGE+GG G A AGGA +P+EV A + DEEE L RGA+ EVDEVLAGA GGA D+
Sbjct: 41 GVAGEKGGAGEAAGARFAGGAAEPDEVVACVGDEEEGLQRGAEAEVDEVLAGASGGARDD 100
Query: 126 RGFESGVRARGEGEGGEEEGEAVGVG-GEG 155
G G G GG +GVG GEG
Sbjct: 101 GG---GGGGNGGQRGGGSRTRGLGVGVGEG 127
BLAST of CmUC01G005630 vs. ExPASy TrEMBL
Match:
A0A5N6L4M9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026331 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 0
Query: 14 FFGEEAGGEGAISVRVKVSAGGVE---ARVVTEMGRRVREETAVRVVAVKRREGRGVAGE 73
F GEEA G+GA+SV V V+A GVE A VV RV +E A V + EG G+AGE
Sbjct: 25 FLGEEATGKGAVSVGVLVTARGVEPEPAGVVVVGAWRVGDEPARGVEVMVGGEGGGMAGE 84
Query: 74 EGGGGRVLRAVA---AGGAFDPNEVAASISDEEEALGRGAKTEVDEVLAGAGGGAGDERG 132
EGG G + + A GGA DP+EV A + DEEE L RGA+ + +VL GAGGG GD G
Sbjct: 85 EGGYGDLGGSGAIGFIGGALDPDEVVAGVGDEEEGLRRGAQAQGHKVLVGAGGGPGDHWG 144
BLAST of CmUC01G005630 vs. ExPASy TrEMBL
Match:
A0A1D1YVI8 (Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.22794 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 0
Query: 9 LQCGGFFGEEAGGEGAISVRVKVSAGGVEARVVTEMGR---RVREETAVRVVAVKRREGR 68
++ GG GEEAGG G + VRV V+AG V+A R RVR ETA+ VVAV+ EG
Sbjct: 70 IEGGGLPGEEAGGRGVVGVRVAVAAGAVDAGAWAGRPRPRVRVRYETALPVVAVEWGEGG 129
Query: 69 GVAGEEGGGGRVLRAVAAGGAFDPNEVAASISDE 100
GVAGEEGG RV A AA GA P+EVAA + DE
Sbjct: 130 GVAGEEGGARRVSGAFAARGAPHPDEVAAGVGDE 163
BLAST of CmUC01G005630 vs. ExPASy TrEMBL
Match:
A0A067FVC2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029800mg PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 35 GVEARVVTEMGRRVREETAVRVVAVKRREGRGVAGEEGGGGRVLRAVAAGGAFDPNEVAA 94
GV ARVV +G E V AV REG GVAGE+GG G AVAAG A DP+EVAA
Sbjct: 57 GVIARVVARVG---DEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 116
Query: 95 SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGEGGEEEGEAVGVGGEG 154
I +EEE L RGA+ E DEVLAGAGG AG + FE E GE + +
Sbjct: 117 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 176
Query: 155 LGRGGEGVFMEEGELQIVGGGG 177
G GG F+E+ E +I GGG
Sbjct: 177 -GTGGMVSFVEKWEFEIFCGGG 179
BLAST of CmUC01G005630 vs. ExPASy TrEMBL
Match:
A0A2H5P4P8 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101650 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 35 GVEARVVTEMGRRVREETAVRVVAVKRREGRGVAGEEGGGGRVLRAVAAGGAFDPNEVAA 94
GV ARVV +G E V AV REG GVAGE+GG G AVAAG A DP+EVAA
Sbjct: 20 GVIARVVARVG---DEALTGGVEAVVGREGGGVAGEKGGTGGAEGAVAAGRAGDPDEVAA 79
Query: 95 SISDEEEALGRGAKTEVDEVLAGAGGGAGDERGFESGVRARGEGEGGEEEGEAVGVGGEG 154
I +EEE L RGA+ E DEVLAGAGG AG + FE E GE + +
Sbjct: 80 GIGNEEEVLRRGAEVEGDEVLAGAGGSAGSDGRFE-------VVEMGEIKRD-------- 139
Query: 155 LGRGGEGVFMEEGELQIVGGGG 177
G GG F+E+ E +I GGG
Sbjct: 140 -GTGGMVSFVEKWEFEIFCGGG 142
BLAST of CmUC01G005630 vs. ExPASy TrEMBL
Match:
A0A5N6R0R7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008121 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 50/101 (49.50%), Postives = 58/101 (57.43%), Query Frame = 0
Query: 14 FFGEEAGGEGAISVRVKVSAGGVE---ARVVTEMGRRVREETAVRVVAVKRREGRGVAGE 73
F GEEA +GAI V V V+A GVE A VV +V +E V AV EG GVAGE
Sbjct: 26 FLGEEATSKGAIGVGVLVAARGVELESAGVVVVGVWQVGDEPTRGVEAVVGGEGGGVAGE 85
Query: 74 EGGGGRVLRAVA---AGGAFDPNEVAASISDEEEALGRGAK 109
EGG G V + A GGA DP+EV A + EEE L GA+
Sbjct: 86 EGGSGDVGGSEAIGFTGGALDPDEVVAGVGYEEEGLRLGAQ 126
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAF7827865.1 | 4.2e-20 | 54.17 | glycine-rich cell wall structural protein 1.0-like [Senna tora] | [more] |
KAB8681452.1 | 7.8e-11 | 50.00 | hypothetical protein FH972_026331 [Carpinus fangiana] | [more] |
KDO70110.1 | 9.6e-09 | 48.59 | hypothetical protein CISIN_1g029800mg [Citrus sinensis] | [more] |
GAY47055.1 | 9.6e-09 | 48.59 | hypothetical protein CUMW_101650 [Citrus unshiu] | [more] |
XP_011468691.1 | 1.5e-06 | 54.44 | PREDICTED: glycine-rich cell wall structural protein 1.0-like [Fragaria vesca su... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5N6L4M9 | 3.8e-11 | 50.00 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026331 PE=4 SV=1 | [more] |
A0A1D1YVI8 | 4.2e-10 | 55.32 | Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.22794 P... | [more] |
A0A067FVC2 | 4.6e-09 | 48.59 | Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029800mg PE=4 SV=1 | [more] |
A0A2H5P4P8 | 4.6e-09 | 48.59 | Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101650 PE=4 SV=1 | [more] |
A0A5N6R0R7 | 9.1e-05 | 49.50 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008121 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |