Clc11G16260 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTCGAAAAGCAGTATCATTAGATTTAAGCAAGAAGATTGAAAGGCACAAACTGAGAATCAACAATGAAGTAGAAGAAATCAAGATGATGATGAACAAATCATCATTAGTTGAAGAAGAATTAGAAGAAGATAATGAAGTAGAAGAAGTTGAATGCAGCTGCTGTGGGATAAAAGAAGAGTGTACAAAACACTATATTTTAGAAGTTCAAAAATGCTTTTCAGGAAAATGGGTTTGTGGGCTTTGCTCTGAAGCTGTTAAAGAAAGAGTCTTGAAATTTCCCAACACAACCATTGACAAAGCTTTGGACTTCCACAAGGAGTTCTGTGATAGCTTTAACGCTACCACAAGGCTCAACCCTAAACTTTCCTTAACCACTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGCACCAATTATTTGGGCTCTTCCTCCGATAATAATAAGCTTTCTCGAAGCATTAGTTGTGATCCTAGAATTGGCCTCCAACACTCTGACTAA ATGATTCGAAAAGCAGTATCATTAGATTTAAGCAAGAAGATTGAAAGGCACAAACTGAGAATCAACAATGAAGTAGAAGAAATCAAGATGATGATGAACAAATCATCATTAGTTGAAGAAGAATTAGAAGAAGATAATGAAGTAGAAGAAGTTGAATGCAGCTGCTGTGGGATAAAAGAAGAGTGTACAAAACACTATATTTTAGAAGTTCAAAAATGCTTTTCAGGAAAATGGGTTTGTGGGCTTTGCTCTGAAGCTGTTAAAGAAAGAGTCTTGAAATTTCCCAACACAACCATTGACAAAGCTTTGGACTTCCACAAGGAGTTCTGTGATAGCTTTAACGCTACCACAAGGCTCAACCCTAAACTTTCCTTAACCACTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGCACCAATTATTTGGGCTCTTCCTCCGATAATAATAAGCTTTCTCGAAGCATTAGTTGTGATCCTAGAATTGGCCTCCAACACTCTGACTAA ATGATTCGAAAAGCAGTATCATTAGATTTAAGCAAGAAGATTGAAAGGCACAAACTGAGAATCAACAATGAAGTAGAAGAAATCAAGATGATGATGAACAAATCATCATTAGTTGAAGAAGAATTAGAAGAAGATAATGAAGTAGAAGAAGTTGAATGCAGCTGCTGTGGGATAAAAGAAGAGTGTACAAAACACTATATTTTAGAAGTTCAAAAATGCTTTTCAGGAAAATGGGTTTGTGGGCTTTGCTCTGAAGCTGTTAAAGAAAGAGTCTTGAAATTTCCCAACACAACCATTGACAAAGCTTTGGACTTCCACAAGGAGTTCTGTGATAGCTTTAACGCTACCACAAGGCTCAACCCTAAACTTTCCTTAACCACTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGCACCAATTATTTGGGCTCTTCCTCCGATAATAATAAGCTTTCTCGAAGCATTAGTTGTGATCCTAGAATTGGCCTCCAACACTCTGACTAA MIRKAVSLDLSKKIERHKLRINNEVEEIKMMMNKSSLVEEELEEDNEVEEVECSCCGIKEECTKHYILEVQKCFSGKWVCGLCSEAVKERVLKFPNTTIDKALDFHKEFCDSFNATTRLNPKLSLTTSMRKIARKSFEKRTNYLGSSSDNNKLSRSISCDPRIGLQHSD Homology
BLAST of Clc11G16260 vs. NCBI nr
Match: XP_038899593.1 (uncharacterized protein LOC120086851 [Benincasa hispida]) HSP 1 Score: 262.3 bits (669), Expect = 2.9e-66 Identity = 141/173 (81.50%), Postives = 154/173 (89.02%), Query Frame = 0
BLAST of Clc11G16260 vs. NCBI nr
Match: XP_008466651.1 (PREDICTED: uncharacterized protein LOC103504007 [Cucumis melo]) HSP 1 Score: 245.4 bits (625), Expect = 3.6e-61 Identity = 134/175 (76.57%), Postives = 150/175 (85.71%), Query Frame = 0
BLAST of Clc11G16260 vs. NCBI nr
Match: KAE8651411.1 (hypothetical protein Csa_002275 [Cucumis sativus]) HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58 Identity = 127/167 (76.05%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Clc11G16260 vs. NCBI nr
Match: XP_031739128.1 (uncharacterized protein LOC116402862 [Cucumis sativus]) HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58 Identity = 127/167 (76.05%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Clc11G16260 vs. NCBI nr
Match: XP_023534820.1 (uncharacterized protein LOC111796448 [Cucurbita pepo subsp. pepo] >XP_023535298.1 uncharacterized protein LOC111796774 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52 Identity = 117/165 (70.91%), Postives = 138/165 (83.64%), Query Frame = 0
BLAST of Clc11G16260 vs. ExPASy TrEMBL
Match: A0A1S3CRY2 (uncharacterized protein LOC103504007 OS=Cucumis melo OX=3656 GN=LOC103504007 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61 Identity = 134/175 (76.57%), Postives = 150/175 (85.71%), Query Frame = 0
BLAST of Clc11G16260 vs. ExPASy TrEMBL
Match: A0A0A0LE54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895120 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58 Identity = 127/167 (76.05%), Postives = 143/167 (85.63%), Query Frame = 0
BLAST of Clc11G16260 vs. ExPASy TrEMBL
Match: A0A6J1IGD0 (uncharacterized protein LOC111476691 OS=Cucurbita maxima OX=3661 GN=LOC111476691 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.8e-51 Identity = 116/165 (70.30%), Postives = 137/165 (83.03%), Query Frame = 0
BLAST of Clc11G16260 vs. ExPASy TrEMBL
Match: A0A6J1FAH1 (uncharacterized protein LOC111443561 OS=Cucurbita moschata OX=3662 GN=LOC111443561 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 4.8e-51 Identity = 116/163 (71.17%), Postives = 136/163 (83.44%), Query Frame = 0
BLAST of Clc11G16260 vs. ExPASy TrEMBL
Match: A0A6J1C661 (uncharacterized protein LOC111007738 OS=Momordica charantia OX=3673 GN=LOC111007738 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 8.5e-48 Identity = 109/166 (65.66%), Postives = 130/166 (78.31%), Query Frame = 0
BLAST of Clc11G16260 vs. TAIR 10
Match: AT2G25780.1 (Protein of unknown function (DUF1677) ) HSP 1 Score: 131.0 bits (328), Expect = 9.3e-31 Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 0
BLAST of Clc11G16260 vs. TAIR 10
Match: AT3G22540.1 (Protein of unknown function (DUF1677) ) HSP 1 Score: 91.3 bits (225), Expect = 8.2e-19 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0
BLAST of Clc11G16260 vs. TAIR 10
Match: AT4G14819.1 (Protein of unknown function (DUF1677) ) HSP 1 Score: 86.3 bits (212), Expect = 2.6e-17 Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Clc11G16260 vs. TAIR 10
Match: AT1G79770.1 (Protein of unknown function (DUF1677) ) HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16 Identity = 49/117 (41.88%), Postives = 64/117 (54.70%), Query Frame = 0
BLAST of Clc11G16260 vs. TAIR 10
Match: AT1G72510.1 (Protein of unknown function (DUF1677) ) HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15 Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|