Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG
mRNA sequence
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG
Coding sequence (CDS)
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG
Protein sequence
MPRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
Homology
BLAST of Clc11G10810 vs. NCBI nr
Match:
XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])
HSP 1 Score: 149.4 bits (376), Expect = 2.4e-32
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 0
Query: 26 SEGESSNPQAS--MNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
SEGESS PQA +E+ +F RI QRL S+ ++ +LEKK+ IERFKALGA FEGTT
Sbjct: 2 SEGESSTPQARAYFQLEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGTT 61
Query: 86 DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
DP EAE WL+ VEKCF VM CPEDRK+ L TF+LQK AE WW++I R A ++ W +F
Sbjct: 62 DPTEAELWLDVVEKCFNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPEF 121
Query: 146 KKS 147
KK+
Sbjct: 122 KKA 124
BLAST of Clc11G10810 vs. NCBI nr
Match:
XP_038887090.1 (uncharacterized protein LOC120077268 [Benincasa hispida])
HSP 1 Score: 147.9 bits (372), Expect = 6.9e-32
Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 0
Query: 26 SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
SEGES+ PQ A +++ + +IAQRL TS+ +++ D+EKK+GIERFKALGA FEGT
Sbjct: 3 SEGESNTPQARADSQLKDIVLDKIAQRLATSVGSVRADIEKKYGIERFKALGAVTFEGTA 62
Query: 86 DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
+PAEAE WL+ VEKCF +M+CPE+RK+ L TF+LQKGAE WW++I R A ++ W +F
Sbjct: 63 NPAEAELWLDVVEKCFNIMNCPEERKVGLATFLLQKGAEKWWKVIFARRASLNAMLWPEF 122
BLAST of Clc11G10810 vs. NCBI nr
Match:
XP_038882393.1 (uncharacterized protein LOC120073661 [Benincasa hispida])
HSP 1 Score: 146.7 bits (369), Expect = 1.5e-31
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 0
Query: 26 SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
SEGES PQ A +E+ +F +I QRLV SM + + D EKK+GIERFKALGA FEGTT
Sbjct: 2 SEGESCTPQARADTQLEDVVFDKIEQRLVASMGSARADSEKKYGIERFKALGAVTFEGTT 61
Query: 86 DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
DPAE E WL+ VEKCF VM C EDRK+ L TF+LQK AE WW++I R + W +F
Sbjct: 62 DPAEVELWLDVVEKCFNVMSCLEDRKMGLATFLLQKEAEKWWKVISARRTSTDVMLWPEF 121
Query: 146 KKSF 148
+K+F
Sbjct: 122 RKAF 125
BLAST of Clc11G10810 vs. NCBI nr
Match:
KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MP+G R + A S+A E S+ ESS P N+EEQL R+AQRL+ +
Sbjct: 1 MPQGRPR-KHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+GIER KALGA F GTT+P +AE WL +EKCF+V C EDRK++L F+L
Sbjct: 61 AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120
Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
Q GAEDWW + E R G + W +FKK+F
Sbjct: 121 QNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149
BLAST of Clc11G10810 vs. NCBI nr
Match:
TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])
HSP 1 Score: 144.4 bits (363), Expect = 7.6e-31
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MPRG R + A S+A E S+ ESS P+ N+EEQL R+AQRLV+ + +
Sbjct: 1 MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+G ER KALGA F GTT+P + EAWL +EKCFRV EDRK++L F+L
Sbjct: 61 AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120
Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
Q AEDWWR+ E R G ++W +FKK+F
Sbjct: 121 QNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match:
A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MP+G R + A S+A E S+ ESS P N+EEQL R+AQRL+ +
Sbjct: 1 MPQGRPR-KHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+GIER KALGA F GTT+P +AE WL +EKCF+V C EDRK++L F+L
Sbjct: 61 AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120
Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
Q GAEDWW + E R G + W +FKK+F
Sbjct: 121 QNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MPRG R + A S+A E S+ ESS P+ N+EEQL R+AQRLV+ + +
Sbjct: 1 MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+G ER KALGA F GTT+P + EAWL +EKCFRV EDRK++L F+L
Sbjct: 61 AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120
Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
Q AEDWWR+ E R G ++W +FKK+F
Sbjct: 121 QNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 8.2e-31
Identity = 79/157 (50.32%), Postives = 102/157 (64.97%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MPRG R + A TS+A E S+ ESS P NMEEQL R+AQRL++ + +
Sbjct: 20 MPRGRPR-KHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 79
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+GIER KALGA F GTT+PA+AEAWL +EKCFRV CPEDRK++L +F+L
Sbjct: 80 AQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 139
Query: 121 QKG----AEDWWRLIEHR---SADAGSLTWADFKKSF 148
Q G EDWWR+ E R ++D S+T ++K +
Sbjct: 140 QNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKY 175
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match:
A0A5A7U067 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00470 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 0
Query: 1 MPRGTRR----GRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSME 60
MPRG R AA A G E S+ ESS +N+EEQL R+AQ LV+ +
Sbjct: 1 MPRGRPRKLSVAEASNAAREAAMGSEE--SDAESSRLHVEVNVEEQLLDRLAQGLVSGIR 60
Query: 61 TIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFM 120
+ Q +LEK F IER KALGA F GTT+ A+AEAWL +EKCF+VM C EDRK++LV F+
Sbjct: 61 SAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLIEKCFKVMRCLEDRKVELVVFL 120
Query: 121 LQKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
L+ G EDWWRL E R ++W +FKK+F
Sbjct: 121 LKNGTEDWWRLTESRRRATVDMSWDEFKKTF 149
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 1 MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
MPRG R + A S+A E S+ ESS P+ N+EEQL R+AQRLV+ + +
Sbjct: 1 MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60
Query: 61 IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
Q D EKK+G ER KALGA F GTT+P + EAWL +EKCFRV EDRK++L F+L
Sbjct: 61 AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120
Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
Q AEDWWR+ E R G++T A+++K +
Sbjct: 121 QNDAEDWWRMEESRRRTTGTMTVAEYEKKY 149
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038890030.1 | 2.4e-32 | 58.54 | uncharacterized protein LOC120079741 [Benincasa hispida] | [more] |
XP_038887090.1 | 6.9e-32 | 54.92 | uncharacterized protein LOC120077268 [Benincasa hispida] | [more] |
XP_038882393.1 | 1.5e-31 | 57.26 | uncharacterized protein LOC120073661 [Benincasa hispida] | [more] |
KAA0026280.1 | 2.6e-31 | 49.33 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... | [more] |
TYJ95881.1 | 7.6e-31 | 50.00 | retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SJ99 | 1.3e-31 | 49.33 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3BB91 | 3.7e-31 | 50.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5D3DES5 | 8.2e-31 | 50.32 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7U067 | 2.4e-30 | 50.33 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7T1M0 | 1.5e-29 | 48.67 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
Match Name | E-value | Identity | Description | |