Clc11G10810 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G10810
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
LocationClcChr11: 16402967 .. 16403410 (+)
RNA-Seq ExpressionClc11G10810
SyntenyClc11G10810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG

mRNA sequence

ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG

Coding sequence (CDS)

ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG

Protein sequence

MPRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF
Homology
BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-32
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 26  SEGESSNPQAS--MNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
           SEGESS PQA     +E+ +F RI QRL  S+  ++ +LEKK+ IERFKALGA  FEGTT
Sbjct: 2   SEGESSTPQARAYFQLEDVVFYRIVQRLAASVGLVRANLEKKYDIERFKALGAVTFEGTT 61

Query: 86  DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
           DP EAE WL+ VEKCF VM CPEDRK+ L TF+LQK AE WW++I  R A   ++ W +F
Sbjct: 62  DPTEAELWLDVVEKCFNVMSCPEDRKVGLATFLLQKEAEKWWKVISVRRASTDAMLWPEF 121

Query: 146 KKS 147
           KK+
Sbjct: 122 KKA 124

BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038887090.1 (uncharacterized protein LOC120077268 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-32
Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 26  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
           SEGES+ PQ  A   +++ +  +IAQRL TS+ +++ D+EKK+GIERFKALGA  FEGT 
Sbjct: 3   SEGESNTPQARADSQLKDIVLDKIAQRLATSVGSVRADIEKKYGIERFKALGAVTFEGTA 62

Query: 86  DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
           +PAEAE WL+ VEKCF +M+CPE+RK+ L TF+LQKGAE WW++I  R A   ++ W +F
Sbjct: 63  NPAEAELWLDVVEKCFNIMNCPEERKVGLATFLLQKGAEKWWKVIFARRASLNAMLWPEF 122

BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038882393.1 (uncharacterized protein LOC120073661 [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-31
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 0

Query: 26  SEGESSNPQ--ASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTT 85
           SEGES  PQ  A   +E+ +F +I QRLV SM + + D EKK+GIERFKALGA  FEGTT
Sbjct: 2   SEGESCTPQARADTQLEDVVFDKIEQRLVASMGSARADSEKKYGIERFKALGAVTFEGTT 61

Query: 86  DPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADF 145
           DPAE E WL+ VEKCF VM C EDRK+ L TF+LQK AE WW++I  R      + W +F
Sbjct: 62  DPAEVELWLDVVEKCFNVMSCLEDRKMGLATFLLQKEAEKWWKVISARRTSTDVMLWPEF 121

Query: 146 KKSF 148
           +K+F
Sbjct: 122 RKAF 125

BLAST of Clc11G10810 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MP+G  R +   A  S+A  E       S+ ESS P    N+EEQL  R+AQRL+  +  
Sbjct: 1   MPQGRPR-KHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+GIER KALGA  F GTT+P +AE WL  +EKCF+V  C EDRK++L  F+L
Sbjct: 61  AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120

Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           Q GAEDWW + E R    G + W +FKK+F
Sbjct: 121 QNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

BLAST of Clc11G10810 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-31
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + +
Sbjct: 1   MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+G ER KALGA  F GTT+P + EAWL  +EKCFRV    EDRK++L  F+L
Sbjct: 61  AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120

Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           Q  AEDWWR+ E R    G ++W +FKK+F
Sbjct: 121 QNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149

BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MP+G  R +   A  S+A  E       S+ ESS P    N+EEQL  R+AQRL+  +  
Sbjct: 1   MPQGRPR-KHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRL 60

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+GIER KALGA  F GTT+P +AE WL  +EKCF+V  C EDRK++L  F+L
Sbjct: 61  AQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLL 120

Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           Q GAEDWW + E R    G + W +FKK+F
Sbjct: 121 QNGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + +
Sbjct: 1   MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+G ER KALGA  F GTT+P + EAWL  +EKCFRV    EDRK++L  F+L
Sbjct: 61  AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120

Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           Q  AEDWWR+ E R    G ++W +FKK+F
Sbjct: 121 QNDAEDWWRMEESRRRTTGDMSWDEFKKAF 149

BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 8.2e-31
Identity = 79/157 (50.32%), Postives = 102/157 (64.97%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MPRG  R +   A TS+A  E       S+ ESS P    NMEEQL  R+AQRL++ + +
Sbjct: 20  MPRGRPR-KHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRS 79

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+GIER KALGA  F GTT+PA+AEAWL  +EKCFRV  CPEDRK++L +F+L
Sbjct: 80  AQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFLL 139

Query: 121 QKG----AEDWWRLIEHR---SADAGSLTWADFKKSF 148
           Q G     EDWWR+ E R   ++D  S+T   ++K +
Sbjct: 140 QNGGGAKGEDWWRMEESRRRITSDIRSMTVTKYEKKY 175

BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7U067 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00470 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 0

Query: 1   MPRGTRR----GRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSME 60
           MPRG  R         AA   A G E   S+ ESS     +N+EEQL  R+AQ LV+ + 
Sbjct: 1   MPRGRPRKLSVAEASNAAREAAMGSEE--SDAESSRLHVEVNVEEQLLDRLAQGLVSGIR 60

Query: 61  TIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFM 120
           + Q +LEK F IER KALGA  F GTT+ A+AEAWL  +EKCF+VM C EDRK++LV F+
Sbjct: 61  SAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLIEKCFKVMRCLEDRKVELVVFL 120

Query: 121 LQKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           L+ G EDWWRL E R      ++W +FKK+F
Sbjct: 121 LKNGTEDWWRLTESRRRATVDMSWDEFKKTF 149

BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 0

Query: 1   MPRGTRRGRQEGAATSHATGEERQA---SEGESSNPQASMNMEEQLFSRIAQRLVTSMET 60
           MPRG  R +   A  S+A  E       S+ ESS P+   N+EEQL  R+AQRLV+ + +
Sbjct: 1   MPRGKPR-KHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRS 60

Query: 61  IQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFML 120
            Q D EKK+G ER KALGA  F GTT+P + EAWL  +EKCFRV    EDRK++L  F+L
Sbjct: 61  AQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFLL 120

Query: 121 QKGAEDWWRLIEHRSADAGSLTWADFKKSF 148
           Q  AEDWWR+ E R    G++T A+++K +
Sbjct: 121 QNDAEDWWRMEESRRRTTGTMTVAEYEKKY 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038890030.12.4e-3258.54uncharacterized protein LOC120079741 [Benincasa hispida][more]
XP_038887090.16.9e-3254.92uncharacterized protein LOC120077268 [Benincasa hispida][more]
XP_038882393.11.5e-3157.26uncharacterized protein LOC120073661 [Benincasa hispida][more]
KAA0026280.12.6e-3149.33DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... [more]
TYJ95881.17.6e-3150.00retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SJ991.3e-3149.33DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BB913.7e-3150.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3DES58.2e-3150.32DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7U0672.4e-3050.33Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T1M01.5e-2948.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G10810.1Clc11G10810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding