Clc11G10810 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG ATGCCCAGAGGTACCAGACGAGGTAGGCAGGAAGGCGCCGCGACATCGCACGCTACCGGGGAGGAGAGACAAGCGTCTGAAGGAGAATCTAGTAATCCTCAGGCGAGTATGAATATGGAGGAACAACTCTTTAGCAGAATCGCACAAAGATTAGTAACTAGTATGGAAACAATTCAGGGTGATCTTGAGAAAAAGTTTGGCATTGAGCGATTTAAAGCATTGGGTGCTCAAGTATTTGAGGGCACCACAGATCCTGCGGAAGCTGAAGCATGGTTGAATCAGGTAGAAAAATGCTTCAGAGTGATGCATTGTCCAGAGGACAGGAAACTTGACTTGGTCACGTTCATGCTCCAAAAAGGAGCTGAAGACTGGTGGCGACTGATAGAGCACAGAAGTGCAGATGCGGGCTCATTAACATGGGCAGATTTTAAGAAGTCATTCTAG MPRGTRRGRQEGAATSHATGEERQASEGESSNPQASMNMEEQLFSRIAQRLVTSMETIQGDLEKKFGIERFKALGAQVFEGTTDPAEAEAWLNQVEKCFRVMHCPEDRKLDLVTFMLQKGAEDWWRLIEHRSADAGSLTWADFKKSF Homology
BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida]) HSP 1 Score: 149.4 bits (376), Expect = 2.4e-32 Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 0
BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038887090.1 (uncharacterized protein LOC120077268 [Benincasa hispida]) HSP 1 Score: 147.9 bits (372), Expect = 6.9e-32 Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 0
BLAST of Clc11G10810 vs. NCBI nr
Match: XP_038882393.1 (uncharacterized protein LOC120073661 [Benincasa hispida]) HSP 1 Score: 146.7 bits (369), Expect = 1.5e-31 Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 0
BLAST of Clc11G10810 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31 Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0
BLAST of Clc11G10810 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]) HSP 1 Score: 144.4 bits (363), Expect = 7.6e-31 Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31 Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 0
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31 Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 8.2e-31 Identity = 79/157 (50.32%), Postives = 102/157 (64.97%), Query Frame = 0
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7U067 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00470 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30 Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 0
BLAST of Clc11G10810 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29 Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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