Clc11G08440 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08440
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pseudouridylate synthase 7-like protein isoform X1
Location	ClcChr11: 9447910 .. 9451062 (+)
RNA-Seq Expression	Clc11G08440
Synteny	Clc11G08440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAACAAATCATCCATGAAGGAGGTTGGTTTAGCTTGTTTGAATGCTTCAATCTAAGTTGGGCTTTCGATAAGGTGTTTAAGAAAATGTGCTACAATTGCTGATTGGTCCTTAGTCGAAATCTAGACCAAATCTGATTTGGTCCAACGCAGTTAAGGCTTTACTCTTTGAAATTTGGTTTGAAAGAAATCAGAGGGTGTTACATGACAAAGCTTCCTCTTGGTTCGTGAGATTTGAGACAACTCGGTTAAATGCTTCATCATGGTGCTCTCTATCCAAGAAATTTGAAGACTTCTCCATTCAAAATATTAGCATCAATTAGAAGGCTTTTATTTTCCCCAATGATTAGAGTCTTGTATTTAGGGGCAAATTGTACTTTTGTTAGTATTGTTGGATTCAATTGTTCTTGTACTAGTTTTTGCTATTCACTTGTTTAGGATACGATGAGAGTGCTAAGGGGGTGTCAACCTAGTTGAGATGTCCGGAAGCACTCACTGATCCTGTGGCCTCTGTTTTTGTTTCTATTACCATATTGTATGTCTCACTTCATAATCTTAATGAAGAGGCTCGTTTCTTTTTCAAAAAAAAAATTTGCCATTAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGTCAACAATAGTTAATTCATACGTGCTTGAGGAATGTTGTGTCAGGGTCCAAATCCTTGGGTTCTTCCCCGACAGGTCAGTTAGCTCTCCTCCCAAGTCTTGCACTTCTACTCATTCGGATTTTAAAATCCCAGGCTCAAATGTGCATTTTGTGTTAGGTACTCCGAGCATCCCTTCAAATTCAACCCAATCCTAGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGGTGATTCAGCAATTCGACCCCTTGATAGGCATGAAATTCCACAGAACTTGATTTCTTTAGTTGAAGGTTGCGATATTGTTCTTGGATGAAAAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGGTCTTAACTGGAAACAAAGAAAGATGCTTTTGATATTGACAAAGAACTATGGAGTTTCAAAGACATTGGTTGGGCTTTTATTGAGGCGTGTGGAAGATCAAGAGGCGTTTTAACAATGTGGGATGAAAATAAGATAGTGGTTTCCGAAGTGCTAAAAGGAGGTTACTCTTTGTTGGTTAAATGTATGACTTTGTAAGAAGACTTGTTGGATCACAAATGTGTACTGTCCAAATGATTATAGAGACGAAGGTTTTCTATGGGCAAAATTGACTTCTCTCTACATCTTCTTGGTCAATATTCTTTAAGAGACTTTTAAAGGAGGAGGAAATTGAGGACTTTCAGACTCTCCTTGGTTTAATTTCTGATTAAAGAATCGCGGGTTATCCTGACAGCAGGTGCTGGTCTTTAGAAGGAAATGGTGAATTTTCGGTCAAATCCCTAGTTACACATTTATCTTTGGCTTCCCCACTTGAAAAACAATTGGAGAAAGAATTATGGAAATCAAAGAGCCTTGTAGGGTGAATATTTTGGTTTGGATTATGCTTTATGGTTTATTAAACTGTGCTTTAGTCATCCAGCGAAAGCTTCCATCTCACTGCTTATGCCCATCTATATGCCCTCTATGTATGGCTGATTCGAAAGACTAGCAGCATTTGTTCTTCACTTGCAGATTTGCTGAAAAGTGTTGGCATCGCTTGTTTGCTTGTTTCAATCTTAGCTGGCCTTTTGCAATGTTTTTGGTGACAATGTGTTGCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

mRNA sequence

ATGCCCAACAAATCATCCATGAAGGAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

Coding sequence (CDS)

ATGCCCAACAAATCATCCATGAAGGAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

Protein sequence

MPNKSSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCPSVSKTKNWFIPTNNIEFDHKTSSVSDSSVTQQRKKNLAKSGVNTVKVQEKAELERRKKKGGRSSLEPSIKGRLETLTNGNTTKGQNATFDMPLKASQRAHDVIKCGVSSADPNLKGSVCNNSINAMTTKKVISSLSSGMPTTEVVNWTLASSPLIPSKNGDTSSSARAQWSTSSKKTISFFEVVSKALHSEKDFLPQFLEYESDGDSIVSPSSDELDKSKTREAHDDEEADIEYGQELNSIFQVEKFRHWARQTIGSLATEAAHCLSLMKILSWNTRGLGDISKRLLLNRCLKKLNPDQILIGPRLKKLPQLLWINAVKALLVEIGFERNQRVLKNKAICWIDRYEIARLNASSWCSLSKPFKDFSIQDLSLN

Homology

[Close]

BLAST of Clc11G08440 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 7.9e-27
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           QTFEAIG YF GLESI    LNL+ V    +KVKENLCGF+P+  E+S+EKRG+I+LNFG
Sbjct: 268 QTFEAIGKYFGGLESIAMEILNLIKVLDAIIKVKENLCGFVPATIEVSNEKRGSIYLNFG 327

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYL 133
           DI++ +PPSK KGD +  DFTNPID++RLN V   E +  + L     FL  S       
Sbjct: 328 DISTSNPPSKVKGDLFESDFTNPIDLIRLNEVKCAEGIYCDPLNSKFNFLFSSNRNIKSS 387

Query: 134 RCPSVSKTKN 144
           R P V    N
Sbjct: 388 RSPGVFVDNN 397

[Close]

BLAST of Clc11G08440 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-26
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 5   SSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEK 64
           SSMK++        IGA+F GLE+I   T+N +NVS+ K++ KENLCGFIP+  EISDE+
Sbjct: 183 SSMKDL--------IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDER 242

Query: 65  RGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLL 124
            GNIFLNFG I+  +PPSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LL
Sbjct: 243 EGNIFLNFGVISLFNPPSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLL 302

Query: 125 PSRNAPSYLRCP 137
           PS + PS  R P
Sbjct: 303 PSNSIPSMQRNP 306

[Close]

BLAST of Clc11G08440 vs. NCBI nr
Match: TYK28792.1 (pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-22
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           +TFEAIG +F GLE+I   TLN  NV + K+++K NLCGF+P+  EI+DE RG  FLN+G
Sbjct: 539 KTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNYG 598

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFL 124
           DI  + P  K KGD  +KDF NPID++R+ +VM+DEE E   + P+  F+
Sbjct: 599 DIEVLCPSPKVKGDLLLKDFFNPIDLIRVLQVMKDEEGEAPEIDPEWGFI 648

[Close]

BLAST of Clc11G08440 vs. NCBI nr
Match: KAA0031952.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 6.1e-19
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 28  SIDNGTLNLLN-------VSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDP 87
           S+ +GT++ +        + + K++ KENLCGFIP+  EISDE+ GNIFLNFG I+  +P
Sbjct: 176 SLKSGTISSMKDCYIRKAMEEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNP 235

Query: 88  PSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCP 137
           PSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LLPS + PS  R P
Sbjct: 236 PSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLLPSNSIPSMQRNP 291

[Close]

BLAST of Clc11G08440 vs. NCBI nr
Match: TYK22383.1 (uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-17
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 15 TFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGD 74
          TFEAI A+F GLE+I + T+N LNVS+ K+++K+NLC FIP+  EI+D+KRGN FL FGD
Sbjct: 3  TFEAIRAHFGGLENIADETINFLNVSEAKIQMKKNLCRFIPATIEITDDKRGNTFLTFGD 62

Query: 75 ITSIDPPSKSKGDPYVKDFTN 96
          I+SI+ PSK +GD ++ D +N
Sbjct: 63 ISSINQPSKVRGDLFIYDSSN 83

[Close]

BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.5e-27
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 5   SSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEK 64
           SSMK++        IGA+F GLE+I   T+N +NVS+ K++ KENLCGFIP+  EISDE+
Sbjct: 183 SSMKDL--------IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDER 242

Query: 65  RGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLL 124
            GNIFLNFG I+  +PPSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LL
Sbjct: 243 EGNIFLNFGVISLFNPPSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLL 302

Query: 125 PSRNAPSYLRCP 137
           PS + PS  R P
Sbjct: 303 PSNSIPSMQRNP 306

[Close]

BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3DYX0 (Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001570 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-23
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           +TFEAIG +F GLE+I   TLN  NV + K+++K NLCGF+P+  EI+DE RG  FLN+G
Sbjct: 539 KTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNYG 598

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFL 124
           DI  + P  K KGD  +KDF NPID++R+ +VM+DEE E   + P+  F+
Sbjct: 599 DIEVLCPSPKVKGDLLLKDFFNPIDLIRVLQVMKDEEGEAPEIDPEWGFI 648

[Close]

BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-19
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 28  SIDNGTLNLLN-------VSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDP 87
           S+ +GT++ +        + + K++ KENLCGFIP+  EISDE+ GNIFLNFG I+  +P
Sbjct: 176 SLKSGTISSMKDCYIRKAMEEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNP 235

Query: 88  PSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCP 137
           PSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LLPS + PS  R P
Sbjct: 236 PSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLLPSNSIPSMQRNP 291

[Close]

BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3DFR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00060 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-18
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 15 TFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGD 74
          TFEAI A+F GLE+I + T+N LNVS+ K+++K+NLC FIP+  EI+D+KRGN FL FGD
Sbjct: 3  TFEAIRAHFGGLENIADETINFLNVSEAKIQMKKNLCRFIPATIEITDDKRGNTFLTFGD 62

Query: 75 ITSIDPPSKSKGDPYVKDFTN 96
          I+SI+ PSK +GD ++ D +N
Sbjct: 63 ISSINQPSKVRGDLFIYDSSN 83

[Close]

BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.8e-16
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 16  FEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDI 75
           ++AIG +F G ESI   T+NL+N S+ K+KV +NLCGF+P+  E+ D  R NIFLNFGDI
Sbjct: 133 YKAIGGFFGGFESISLKTMNLINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGDI 192

Query: 76  TSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEI-NSLRPDLAFL 124
             ++ P   +   ++    N ID++R+N+V+ DE  E  + ++ + AFL
Sbjct: 193 KVLEAPKVIEEALFISYVNNLIDLLRINQVLLDEGGESPDMMKLEWAFL 241

The following BLAST results are available for this feature:

BLAST of Clc11G08440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904899.1	7.9e-27	52.31	uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]	[more]
TYK16775.1	1.8e-26	51.52	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK28792.1	1.2e-22	51.82	pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0031952.1	6.1e-19	46.55	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK22383.1	1.5e-17	58.02	uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa]	[more]

BLAST of Clc11G08440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G08440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ35	8.5e-27	51.52	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DYX0	5.7e-23	51.82	Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7SLN9	2.9e-19	46.55	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DFR0	7.2e-18	58.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V878	8.8e-16	43.12	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc11G08440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08440.1	Clc11G08440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0004197	cysteine-type endopeptidase activity