Clc11G08440 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G08440
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPseudouridylate synthase 7-like protein isoform X1
LocationClcChr11: 9447910 .. 9451062 (+)
RNA-Seq ExpressionClc11G08440
SyntenyClc11G08440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAACAAATCATCCATGAAGGAGGTTGGTTTAGCTTGTTTGAATGCTTCAATCTAAGTTGGGCTTTCGATAAGGTGTTTAAGAAAATGTGCTACAATTGCTGATTGGTCCTTAGTCGAAATCTAGACCAAATCTGATTTGGTCCAACGCAGTTAAGGCTTTACTCTTTGAAATTTGGTTTGAAAGAAATCAGAGGGTGTTACATGACAAAGCTTCCTCTTGGTTCGTGAGATTTGAGACAACTCGGTTAAATGCTTCATCATGGTGCTCTCTATCCAAGAAATTTGAAGACTTCTCCATTCAAAATATTAGCATCAATTAGAAGGCTTTTATTTTCCCCAATGATTAGAGTCTTGTATTTAGGGGCAAATTGTACTTTTGTTAGTATTGTTGGATTCAATTGTTCTTGTACTAGTTTTTGCTATTCACTTGTTTAGGATACGATGAGAGTGCTAAGGGGGTGTCAACCTAGTTGAGATGTCCGGAAGCACTCACTGATCCTGTGGCCTCTGTTTTTGTTTCTATTACCATATTGTATGTCTCACTTCATAATCTTAATGAAGAGGCTCGTTTCTTTTTCAAAAAAAAAATTTGCCATTAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGTCAACAATAGTTAATTCATACGTGCTTGAGGAATGTTGTGTCAGGGTCCAAATCCTTGGGTTCTTCCCCGACAGGTCAGTTAGCTCTCCTCCCAAGTCTTGCACTTCTACTCATTCGGATTTTAAAATCCCAGGCTCAAATGTGCATTTTGTGTTAGGTACTCCGAGCATCCCTTCAAATTCAACCCAATCCTAGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGGTGATTCAGCAATTCGACCCCTTGATAGGCATGAAATTCCACAGAACTTGATTTCTTTAGTTGAAGGTTGCGATATTGTTCTTGGATGAAAAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGGTCTTAACTGGAAACAAAGAAAGATGCTTTTGATATTGACAAAGAACTATGGAGTTTCAAAGACATTGGTTGGGCTTTTATTGAGGCGTGTGGAAGATCAAGAGGCGTTTTAACAATGTGGGATGAAAATAAGATAGTGGTTTCCGAAGTGCTAAAAGGAGGTTACTCTTTGTTGGTTAAATGTATGACTTTGTAAGAAGACTTGTTGGATCACAAATGTGTACTGTCCAAATGATTATAGAGACGAAGGTTTTCTATGGGCAAAATTGACTTCTCTCTACATCTTCTTGGTCAATATTCTTTAAGAGACTTTTAAAGGAGGAGGAAATTGAGGACTTTCAGACTCTCCTTGGTTTAATTTCTGATTAAAGAATCGCGGGTTATCCTGACAGCAGGTGCTGGTCTTTAGAAGGAAATGGTGAATTTTCGGTCAAATCCCTAGTTACACATTTATCTTTGGCTTCCCCACTTGAAAAACAATTGGAGAAAGAATTATGGAAATCAAAGAGCCTTGTAGGGTGAATATTTTGGTTTGGATTATGCTTTATGGTTTATTAAACTGTGCTTTAGTCATCCAGCGAAAGCTTCCATCTCACTGCTTATGCCCATCTATATGCCCTCTATGTATGGCTGATTCGAAAGACTAGCAGCATTTGTTCTTCACTTGCAGATTTGCTGAAAAGTGTTGGCATCGCTTGTTTGCTTGTTTCAATCTTAGCTGGCCTTTTGCAATGTTTTTGGTGACAATGTGTTGCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

mRNA sequence

ATGCCCAACAAATCATCCATGAAGGAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

Coding sequence (CDS)

ATGCCCAACAAATCATCCATGAAGGAGATTATTGGTGGACAAACATTTGAAGCCATTGGAGCATACTTTAGTGGATTGGAAAGCATAGATAATGGAACATTGAATCTTCTTAATGTTTCGAAGCAAAAATTAAAAGTTAAGGAAAATCTTTGCGGTTTTATTCCATCAAGAACTGAGATTTCAGATGAAAAGAGGGGGAATATCTTCTTAAATTTTGGAGACATTACTTCAATCGATCCACCAAGTAAGTCAAAAGGTGATCCATATGTTAAAGATTTTACTAATCCTATTGATATCGTTCGGTTAAATCGAGTTATGCAGGATGAAGAGGTGGAGATTAACTCTTTAAGGCCCGACTTGGCTTTTCTTTTACCTTCTCGGAACGCCCCAAGTTATTTAAGATGTCCATCAGTCTCGAAGACAAAGAACTGGTTCATTCCGACAAATAATATAGAATTTGACCATAAAACCTCCTCTGTTTCCGACTCCAGTGTAACTCAACAAAGAAAGAAGAACTTGGCAAAATCAGGTGTGAACACGGTTAAGGTTCAAGAAAAGGCGGAATTGGAGAGGAGAAAGAAAAAAGGCGGTCGTTCGTCTTTAGAGCCATCAATAAAGGGGCGATTAGAAACGTTGACAAATGGCAACACTACAAAGGGACAAAATGCGACCTTCGATATGCCATTAAAAGCTTCCCAACGAGCACATGATGTTATTAAATGTGGCGTTTCATCTGCAGATCCTAATTTGAAAGGAAGTGTCTGCAACAACTCCATTAATGCCATGACAACTAAGAAAGTAATTAGTAGCCTTTCTTCTGGAATGCCAACCACCGAAGTTGTTAACTGGACATTGGCCTCATCCCCTTTAATCCCTTCCAAAAATGGCGACACTTCTTCCTCTGCTCGAGCTCAGTGGTCGACGAGTTCTAAAAAAACGATCTCATTTTTTGAAGTCGTTTCCAAAGCACTTCATTCGGAAAAAGACTTCCTTCCTCAATTCTTGGAGTATGAATCGGATGGAGACTCAATTGTAAGCCCTAGCAGTGATGAACTGGATAAATCCAAAACAAGAGAAGCTCATGATGATGAAGAAGCGGACATTGAATATGGCCAAGAATTAAATTCCATATTTCAGGTAGAGAAGTTCAGACATTGGGCAAGGCAGACCATTGGATCATTGGCGACAGAAGCAGCTCATTGTTTGTCCTTAATGAAGATCCTTTCGTGGAACACAAGAGGATTAGGAGACATCTCCAAACGTTTATTGCTAAACAGATGTTTGAAGAAATTGAATCCAGATCAGATTTTGATTGGCCCAAGACTTAAAAAGCTTCCACAACTACTTTGGATAAACGCGGTCAAAGCATTACTTGTAGAAATTGGGTTCGAACGAAACCAAAGAGTCCTCAAGAACAAAGCCATTTGTTGGATAGATCGCTATGAGATCGCTAGGCTTAATGCATCCTCGTGGTGCTCTCTTTCAAAGCCCTTCAAAGATTTCTCCATCCAAGATTTAAGTCTCAACTAG

Protein sequence

MPNKSSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCPSVSKTKNWFIPTNNIEFDHKTSSVSDSSVTQQRKKNLAKSGVNTVKVQEKAELERRKKKGGRSSLEPSIKGRLETLTNGNTTKGQNATFDMPLKASQRAHDVIKCGVSSADPNLKGSVCNNSINAMTTKKVISSLSSGMPTTEVVNWTLASSPLIPSKNGDTSSSARAQWSTSSKKTISFFEVVSKALHSEKDFLPQFLEYESDGDSIVSPSSDELDKSKTREAHDDEEADIEYGQELNSIFQVEKFRHWARQTIGSLATEAAHCLSLMKILSWNTRGLGDISKRLLLNRCLKKLNPDQILIGPRLKKLPQLLWINAVKALLVEIGFERNQRVLKNKAICWIDRYEIARLNASSWCSLSKPFKDFSIQDLSLN
Homology
[Close]
BLAST of Clc11G08440 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 7.9e-27
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 0 

Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           QTFEAIG YF GLESI    LNL+ V    +KVKENLCGF+P+  E+S+EKRG+I+LNFG
Sbjct: 268 QTFEAIGKYFGGLESIAMEILNLIKVLDAIIKVKENLCGFVPATIEVSNEKRGSIYLNFG 327

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYL 133
           DI++ +PPSK KGD +  DFTNPID++RLN V   E +  + L     FL  S       
Sbjct: 328 DISTSNPPSKVKGDLFESDFTNPIDLIRLNEVKCAEGIYCDPLNSKFNFLFSSNRNIKSS 387

Query: 134 RCPSVSKTKN 144
           R P V    N
Sbjct: 388 RSPGVFVDNN 397

[Close]
BLAST of Clc11G08440 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-26
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 0 

Query: 5   SSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEK 64
           SSMK++        IGA+F GLE+I   T+N +NVS+ K++ KENLCGFIP+  EISDE+
Sbjct: 183 SSMKDL--------IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDER 242

Query: 65  RGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLL 124
            GNIFLNFG I+  +PPSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LL
Sbjct: 243 EGNIFLNFGVISLFNPPSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLL 302

Query: 125 PSRNAPSYLRCP 137
           PS + PS  R P
Sbjct: 303 PSNSIPSMQRNP 306

[Close]
BLAST of Clc11G08440 vs. NCBI nr
Match: TYK28792.1 (pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-22
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           +TFEAIG +F GLE+I   TLN  NV + K+++K NLCGF+P+  EI+DE RG  FLN+G
Sbjct: 539 KTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNYG 598

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFL 124
           DI  + P  K KGD  +KDF NPID++R+ +VM+DEE E   + P+  F+
Sbjct: 599 DIEVLCPSPKVKGDLLLKDFFNPIDLIRVLQVMKDEEGEAPEIDPEWGFI 648

[Close]
BLAST of Clc11G08440 vs. NCBI nr
Match: KAA0031952.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 6.1e-19
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 28  SIDNGTLNLLN-------VSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDP 87
           S+ +GT++ +        + + K++ KENLCGFIP+  EISDE+ GNIFLNFG I+  +P
Sbjct: 176 SLKSGTISSMKDCYIRKAMEEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNP 235

Query: 88  PSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCP 137
           PSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LLPS + PS  R P
Sbjct: 236 PSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLLPSNSIPSMQRNP 291

[Close]
BLAST of Clc11G08440 vs. NCBI nr
Match: TYK22383.1 (uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-17
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 15 TFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGD 74
          TFEAI A+F GLE+I + T+N LNVS+ K+++K+NLC FIP+  EI+D+KRGN FL FGD
Sbjct: 3  TFEAIRAHFGGLENIADETINFLNVSEAKIQMKKNLCRFIPATIEITDDKRGNTFLTFGD 62

Query: 75 ITSIDPPSKSKGDPYVKDFTN 96
          I+SI+ PSK +GD ++ D +N
Sbjct: 63 ISSINQPSKVRGDLFIYDSSN 83

[Close]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.5e-27
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 0 

Query: 5   SSMKEIIGGQTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEK 64
           SSMK++        IGA+F GLE+I   T+N +NVS+ K++ KENLCGFIP+  EISDE+
Sbjct: 183 SSMKDL--------IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDER 242

Query: 65  RGNIFLNFGDITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLL 124
            GNIFLNFG I+  +PPSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LL
Sbjct: 243 EGNIFLNFGVISLFNPPSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLL 302

Query: 125 PSRNAPSYLRCP 137
           PS + PS  R P
Sbjct: 303 PSNSIPSMQRNP 306

[Close]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3DYX0 (Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001570 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-23
Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 14  QTFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFG 73
           +TFEAIG +F GLE+I   TLN  NV + K+++K NLCGF+P+  EI+DE RG  FLN+G
Sbjct: 539 KTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNYG 598

Query: 74  DITSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFL 124
           DI  + P  K KGD  +KDF NPID++R+ +VM+DEE E   + P+  F+
Sbjct: 599 DIEVLCPSPKVKGDLLLKDFFNPIDLIRVLQVMKDEEGEAPEIDPEWGFI 648

[Close]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-19
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 28  SIDNGTLNLLN-------VSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDITSIDP 87
           S+ +GT++ +        + + K++ KENLCGFIP+  EISDE+ GNIFLNFG I+  +P
Sbjct: 176 SLKSGTISSMKDCYIRKAMEEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLFNP 235

Query: 88  PSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEINSLRPDLAFLLPSRNAPSYLRCP 137
           PSK  GD +  +F+N +DIVRL++VM+DE +    L P   +LLPS + PS  R P
Sbjct: 236 PSKVLGDLFTHNFSNSLDIVRLSQVMKDEGLRKVHLAPKFDYLLPSNSIPSMQRNP 291

[Close]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5D3DFR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00060 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-18
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 15 TFEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGD 74
          TFEAI A+F GLE+I + T+N LNVS+ K+++K+NLC FIP+  EI+D+KRGN FL FGD
Sbjct: 3  TFEAIRAHFGGLENIADETINFLNVSEAKIQMKKNLCRFIPATIEITDDKRGNTFLTFGD 62

Query: 75 ITSIDPPSKSKGDPYVKDFTN 96
          I+SI+ PSK +GD ++ D +N
Sbjct: 63 ISSINQPSKVRGDLFIYDSSN 83

[Close]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.8e-16
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 16  FEAIGAYFSGLESIDNGTLNLLNVSKQKLKVKENLCGFIPSRTEISDEKRGNIFLNFGDI 75
           ++AIG +F G ESI   T+NL+N S+ K+KV +NLCGF+P+  E+ D  R NIFLNFGDI
Sbjct: 133 YKAIGGFFGGFESISLKTMNLINCSEAKIKVSQNLCGFLPAMVELRDAFRDNIFLNFGDI 192

Query: 76  TSIDPPSKSKGDPYVKDFTNPIDIVRLNRVMQDEEVEI-NSLRPDLAFL 124
             ++ P   +   ++    N ID++R+N+V+ DE  E  + ++ + AFL
Sbjct: 193 KVLEAPKVIEEALFISYVNNLIDLLRINQVLLDEGGESPDMMKLEWAFL 241

The following BLAST results are available for this feature:
BLAST of Clc11G08440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904899.17.9e-2752.31uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
TYK16775.11.8e-2651.52DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK28792.11.2e-2251.82pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa][more]
KAA0031952.16.1e-1946.55Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
TYK22383.11.5e-1758.02uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa][more]
BLAST of Clc11G08440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CZ358.5e-2751.52DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DYX05.7e-2351.82Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa O... [more]
A0A5A7SLN92.9e-1946.55Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3DFR07.2e-1858.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V8788.8e-1643.12DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Clc11G08440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 341..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..222

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G08440.1Clc11G08440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0032991 protein-containing complex
molecular_function GO:0004197 cysteine-type endopeptidase activity