Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACCATTGAAAAATCCTTTGCAAAAGTATGCCAATTCCAAACTTTATTATTGTCTATACATAACTAAAATTATCCATTCCTTTTTCCAATTTATTCAAATTCCCTCTCATCCCCACAAAAATATCTCCCAACTCCCAGCCCATTCCTCCTGCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAGAAGATGGTGTATTTCAAAGGGCTCCTTCTTGTTGATGATTGAAATCTGTGTATGATTAAAGTTTACTCTTCCTTGGAATAGAAATGTAATTTGATTACTTACTTGTGAATATATATAGACGCATTTCGTCATATAAACATGTAGATTGGACGGTTAAATTGTAGAGTGAAAGTTTGGATCATCTACCTTTTAATCAGATGCATGCATTTAGACATATTTGTTAAGAAGAGAG
mRNA sequence
AAAAAACCATTGAAAAATCCTTTGCAAAAGTATGCCAATTCCAAACTTTATTATTGTCTATACATAACTAAAATTATCCATTCCTTTTTCCAATTTATTCAAATTCCCTCTCATCCCCACAAAAATATCTCCCAACTCCCAGCCCATTCCTCCTGCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAGAAGATGGTGTATTTCAAAGGGCTCCTTCTTGTTGATGATTGAAATCTGTGTATGATTAAAGTTTACTCTTCCTTGGAATAGAAATGTAATTTGATTACTTACTTGTGAATATATATAGACGCATTTCGTCATATAAACATGTAGATTGGACGGTTAAATTGTAGAGTGAAAGTTTGGATCATCTACCTTTTAATCAGATGCATGCATTTAGACATATTTGTTAAGAAGAGAG
Coding sequence (CDS)
ATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAG
Protein sequence
MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPKQLW
Homology
BLAST of Clc10G11470 vs. NCBI nr
Match:
KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus])
HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 103/126 (81.75%), Postives = 113/126 (89.68%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCH---PSDPSDSSEEKTKKKAQE 60
MAALSAGHRHFF QS SAT+LF NRSISPRSI++LC H PSDP+D SEEKTKKK+QE
Sbjct: 1 MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
Query: 61 RKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 120
RK+M+ GF QRFEKMGI+LKEKLSPQ KGDWKD+TLMSLSFAVYVYISQKIVCAYFLWM+
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
Query: 121 MPKQLW 124
MPK LW
Sbjct: 121 MPKPLW 126
BLAST of Clc10G11470 vs. NCBI nr
Match:
KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa])
HSP 1 Score: 197.6 bits (501), Expect = 6.3e-47
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCH---PSDPSDSSEEKTKKKAQE 60
MAALSAGHRHFF S SA V F NRSISPRSIA+LC H PSDP+D S+EKTKKK+QE
Sbjct: 1 MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60
Query: 61 RKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 120
RK+M+ GF QRFEKMGI+LKEKLSPQ KGDWKD+TLMSLSFAVYVYISQKIVCAYFLWMS
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120
Query: 121 MPKQLW 124
MPK LW
Sbjct: 121 MPKPLW 126
BLAST of Clc10G11470 vs. NCBI nr
Match:
KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44
Identity = 101/125 (80.80%), Postives = 105/125 (84.00%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCC--HPSDPSDSSEEKTKKKAQER 60
MAALSAGHRHFF V FGNRSISPR I LLCC H DPSDSSEEKTKK QE
Sbjct: 1 MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKD-QEG 60
Query: 61 KQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSM 120
KQM+PGF QR++KMG+ELKEKLSPQ KGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSM
Sbjct: 61 KQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSM 118
Query: 121 PKQLW 124
PKQLW
Sbjct: 121 PKQLW 118
BLAST of Clc10G11470 vs. NCBI nr
Match:
KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43
Identity = 100/126 (79.37%), Postives = 107/126 (84.92%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCH---PSDPSDSSEEKTKKKAQE 60
MAALSAGHR+FF SA V F NRSISPRSI LLC H PSDPSD SEEK KK+ QE
Sbjct: 1 MAALSAGHRYFFG----SAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60
Query: 61 RKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 120
+KQ +PGF QRFEKMGIELKEKLSPQ KGDWKD+TLMSLSFAVYVYISQKIVCAYF+WMS
Sbjct: 61 KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120
Query: 121 MPKQLW 124
MPKQ+W
Sbjct: 121 MPKQVW 121
BLAST of Clc10G11470 vs. NCBI nr
Match:
XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])
HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33
Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQ 60
MAALSAGHRHFF+ + +A L RS SP+SI LLC H DP SEE +K+ + ++Q
Sbjct: 1 MAALSAGHRHFFR-RGAAAQQLRTRRS-SPKSIVLLCRHSQDP---SEENSKEGEERKQQ 60
Query: 61 MLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPK 120
+ GF +RFEKMG+ELKEKLSPQ KGDWKDV LMSLSFAVYVYISQKIVCAYF+WMSMPK
Sbjct: 61 KIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMSMPK 119
Query: 121 -QLW 124
QLW
Sbjct: 121 QQLW 119
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match:
A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 9.5e-49
Identity = 103/126 (81.75%), Postives = 113/126 (89.68%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCH---PSDPSDSSEEKTKKKAQE 60
MAALSAGHRHFF QS SAT+LF NRSISPRSI++LC H PSDP+D SEEKTKKK+QE
Sbjct: 1 MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
Query: 61 RKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 120
RK+M+ GF QRFEKMGI+LKEKLSPQ KGDWKD+TLMSLSFAVYVYISQKIVCAYFLWM+
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
Query: 121 MPKQLW 124
MPK LW
Sbjct: 121 MPKPLW 126
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match:
A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCH---PSDPSDSSEEKTKKKAQE 60
MAALSAGHRHFF S SA V F NRSISPRSIA+LC H PSDP+D S+EKTKKK+QE
Sbjct: 1 MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60
Query: 61 RKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 120
RK+M+ GF QRFEKMGI+LKEKLSPQ KGDWKD+TLMSLSFAVYVYISQKIVCAYFLWMS
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120
Query: 121 MPKQLW 124
MPK LW
Sbjct: 121 MPKPLW 126
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match:
A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQ 60
MAALSAGHRHFF+ + +A L RS SP+SI LLC H DP SEE +K+ + ++Q
Sbjct: 1 MAALSAGHRHFFR-RGAAAQQLRTRRS-SPKSIVLLCRHSQDP---SEENSKEGEERKQQ 60
Query: 61 MLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPK 120
+ GF +RFEKMG+ELKEKLSPQ KGDWKDV LMSLSFAVYVYISQKIVCAYF+WMSMPK
Sbjct: 61 KIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMSMPK 119
Query: 121 -QLW 124
QLW
Sbjct: 121 QQLW 119
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match:
A0A660KVF0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 6.6e-26
Identity = 70/123 (56.91%), Postives = 82/123 (66.67%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQ 60
MAALS GH +P T +S SP ++ L CC P DSS +TKK+ +RK
Sbjct: 1 MAALSIGHSFHREP----ITYQQLRKSSSPTTLILSCCQRHKPVDSSNPRTKKEKSKRKL 60
Query: 61 MLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPK 120
+L FEK G L+E LSP+ KGDWKD+TLMSLSFAVYVYISQK+VCAYF WMSMPK
Sbjct: 61 LLQRSSVGFEKFGKILRENLSPKQKGDWKDLTLMSLSFAVYVYISQKLVCAYFAWMSMPK 119
Query: 121 QLW 124
QLW
Sbjct: 121 QLW 119
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match:
A0A6P9E117 (uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 0
Query: 1 MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQ 60
MAAL GH + + T+ + SPR+ LL C P+D+S +TKK+++ R+
Sbjct: 1 MAALLVGHSLYRR----ICTIQEPRKKSSPRTFILLGCQSHKPADTSNPRTKKESR-RES 60
Query: 61 MLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPK 120
+LPG F K G LKE +SPQ KGDWKDV LMSLSFAVYVYISQKIVCAY WMSMPK
Sbjct: 61 LLPGILVGFGKFGKVLKENMSPQQKGDWKDVMLMSLSFAVYVYISQKIVCAYCAWMSMPK 118
Query: 121 QLW 124
Q W
Sbjct: 121 QPW 118
BLAST of Clc10G11470 vs. TAIR 10
Match:
AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 0
Query: 58 RKQMLP----GFFQRFEKMGIELKEKLSPQI-----KGDWKDVTLMSLSFAVYVYISQKI 117
RKQ LP G QR + I K+ + KGD KD+ LMSLSFAVYVYISQ +
Sbjct: 38 RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97
Query: 118 VCAYFLW--MSMPKQLW 124
VCAYF W +S PK W
Sbjct: 98 VCAYFSWQHLSFPKSSW 114
BLAST of Clc10G11470 vs. TAIR 10
Match:
AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 38/74 (51.35%), Postives = 44/74 (59.46%), Query Frame = 0
Query: 58 RKQMLP----GFFQRFEKMGIELKEKLSPQI-----KGDWKDVTLMSLSFAVYVYISQKI 117
RKQ LP G QR + I K+ + KGD KD+ LMSLSFAVYVYISQ +
Sbjct: 38 RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97
Query: 118 VCAYFLW--MSMPK 121
VCAYF W +S PK
Sbjct: 98 VCAYFSWQHLSFPK 111
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN58582.1 | 2.0e-48 | 81.75 | hypothetical protein Csa_001602 [Cucumis sativus] | [more] |
KAA0048367.1 | 6.3e-47 | 80.95 | putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >T... | [more] |
KAG6581569.1 | 2.2e-44 | 80.80 | hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6606884.1 | 2.5e-43 | 79.37 | hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022152649.1 | 1.0e-33 | 68.55 | uncharacterized protein LOC111020315 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LD14 | 9.5e-49 | 81.75 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1 | [more] |
A0A5D3BX35 | 3.1e-47 | 80.95 | Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa O... | [more] |
A0A6J1DGN1 | 5.1e-34 | 68.55 | uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A660KVF0 | 6.6e-26 | 56.91 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1 | [more] |
A0A6P9E117 | 1.4e-23 | 54.47 | uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 P... | [more] |
Match Name | E-value | Identity | Description | |
AT3G52070.1 | 1.9e-09 | 50.65 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT3G52070.2 | 1.2e-08 | 51.35 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |