Clc10G11470 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAACCATTGAAAAATCCTTTGCAAAAGTATGCCAATTCCAAACTTTATTATTGTCTATACATAACTAAAATTATCCATTCCTTTTTCCAATTTATTCAAATTCCCTCTCATCCCCACAAAAATATCTCCCAACTCCCAGCCCATTCCTCCTGCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAGAAGATGGTGTATTTCAAAGGGCTCCTTCTTGTTGATGATTGAAATCTGTGTATGATTAAAGTTTACTCTTCCTTGGAATAGAAATGTAATTTGATTACTTACTTGTGAATATATATAGACGCATTTCGTCATATAAACATGTAGATTGGACGGTTAAATTGTAGAGTGAAAGTTTGGATCATCTACCTTTTAATCAGATGCATGCATTTAGACATATTTGTTAAGAAGAGAG AAAAAACCATTGAAAAATCCTTTGCAAAAGTATGCCAATTCCAAACTTTATTATTGTCTATACATAACTAAAATTATCCATTCCTTTTTCCAATTTATTCAAATTCCCTCTCATCCCCACAAAAATATCTCCCAACTCCCAGCCCATTCCTCCTGCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAGAAGATGGTGTATTTCAAAGGGCTCCTTCTTGTTGATGATTGAAATCTGTGTATGATTAAAGTTTACTCTTCCTTGGAATAGAAATGTAATTTGATTACTTACTTGTGAATATATATAGACGCATTTCGTCATATAAACATGTAGATTGGACGGTTAAATTGTAGAGTGAAAGTTTGGATCATCTACCTTTTAATCAGATGCATGCATTTAGACATATTTGTTAAGAAGAGAG ATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCCAACCACAAAGCTGCAGCGCCACCGTGCTGTTCGGAAACAGAAGCATCAGCCCCAGATCCATCGCCCTCCTCTGCTGCCATCCTTCAGATCCTTCAGATTCTTCAGAAGAAAAAACGAAGAAGAAAGCCCAAGAAAGAAAACAGATGCTTCCTGGGTTTTTCCAGAGATTTGAGAAGATGGGAATTGAATTGAAGGAGAAATTGAGTCCTCAAATAAAGGGGGATTGGAAGGATGTGACACTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCGAAACAACTGTGGTAG MAALSAGHRHFFQPQSCSATVLFGNRSISPRSIALLCCHPSDPSDSSEEKTKKKAQERKQMLPGFFQRFEKMGIELKEKLSPQIKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMSMPKQLW Homology
BLAST of Clc10G11470 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus]) HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48 Identity = 103/126 (81.75%), Postives = 113/126 (89.68%), Query Frame = 0
BLAST of Clc10G11470 vs. NCBI nr
Match: KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]) HSP 1 Score: 197.6 bits (501), Expect = 6.3e-47 Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0
BLAST of Clc10G11470 vs. NCBI nr
Match: KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44 Identity = 101/125 (80.80%), Postives = 105/125 (84.00%), Query Frame = 0
BLAST of Clc10G11470 vs. NCBI nr
Match: KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43 Identity = 100/126 (79.37%), Postives = 107/126 (84.92%), Query Frame = 0
BLAST of Clc10G11470 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia]) HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33 Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 0
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match: A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 9.5e-49 Identity = 103/126 (81.75%), Postives = 113/126 (89.68%), Query Frame = 0
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match: A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47 Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match: A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34 Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 0
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match: A0A660KVF0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 6.6e-26 Identity = 70/123 (56.91%), Postives = 82/123 (66.67%), Query Frame = 0
BLAST of Clc10G11470 vs. ExPASy TrEMBL
Match: A0A6P9E117 (uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23 Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 0
BLAST of Clc10G11470 vs. TAIR 10
Match: AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09 Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 0
BLAST of Clc10G11470 vs. TAIR 10
Match: AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08 Identity = 38/74 (51.35%), Postives = 44/74 (59.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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