Clc10G11050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G11050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	ClcChr10: 24400473 .. 24402318 (-)
RNA-Seq Expression	Clc10G11050
Synteny	Clc10G11050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAGGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCAAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTTCCCCCCCAAAAATCTATTTTATGTATAACATTTAATGAACACAACTTCGATCCAACTCCAACATTTAACAATGGATCCATCTCCATTAACATCTCGGAGAGAACTATTGTTGGAGAGCCCGAGAGGGATAGAGAAACTTTTTTTAGAGAACGAGACTTTTGTTTAGAGACATGAGTGTATTGGAGAGAGAAAAAGGACTGTTGTATAATAAGGAATGTGGTAAAGAGAATCTTCTCTCTTTTTATTTTTTGTTTAGGAGCATGCTTGCTGAAGAGTCCATTTCTCAGCTCAAAGAGAATAGATATTGAACAATCCTTTTTGAAGCTATTTAAAGAATTCAAGCATATCTACACAAAATGATCTATCAGATTACTAGAATACTAACTTTCCCTTTGTTTACCAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGGTAGCACTGTTTAAACAACCAAACAAATGATAATATCACATAACGTATAATTCTACTTCCACAACTGTATTTACTTGTGCAATTGCAAAATTTGAGGGTGCAATTATTAGATTCGTAAGTATGATAAACTTTCACAATTTCCTTGTCATCTTTATCTCGTCTATCGAAGAGGTATGAATTCAGCAACATTCCAACCAAAGTTCTAACACATACAATTATCTTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGAGTTTCTGAAGTTTTTGCATTTCTTACTTCAATCACTAAGAACTGACACCCTTCTTAAACTTAACAGGTGATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGTGAGAAGTTGAATGCAAATAGAATTGAGCTAGTTATGAATAACCATTATATCTAACTACTACCAAGATTCAATTAGAAGAAGTTAACAAACAGCATACCTCTTCCAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTCAAGCTTCCACTTGCAATCAATGTTGGGACTAATTGAGATATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

mRNA sequence

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAGGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCAAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTAACAGCTAGAAATATCAACTCCATTTCAAGTTCATTCAACAGATCTGCACCTAAATCTGCAACTCAAACATTCAAAATCAAGGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAACACCTTCTCCTTTTCATCTTTCAGATTTCTGCAGACTTCCATTTTCAAACACTCTTCCCTCTTCTATCTATCTAAACAGTTTTATCTTTCCACAGTTCCCTATTTGATGATGGAAAGAAAAACTTGGCTTGGTCTTTCTAATTTCTGGCTTCTTCTACTTTTTTGCTATACTATCAATGTCTCTAGAAAGTATAGTTCTTCATACAGTTCCTTTCCATCTCAAGATTTTTTTGTTCTAATGAAGAGAAGAAGCAACAAAACGTCAAGACGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAGGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCAAGACCTTAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAAGATCAACACATCATTCACTCGAAAGTGCTGTACCTGTTCTTTGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGTGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTAACACCTCAATCAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATGCATAG

Protein sequence

MAEAGHLVTARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQTSIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFPSQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRKSNA

Homology

[Close]

BLAST of Clc10G11050 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 1.5e-105
Identity = 214/314 (68.15%), Postives = 224/314 (71.34%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISSSFN++APK +TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                     RSNKT+RRLITIST+GSRWQGKWTCDYLLSL+DLNLEDLVEDE+KNAHVF
Sbjct: 121 ----------RSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNRANREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPD 230

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASID 230

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKSN+
Sbjct: 301 KRWSRLLELRKSNS 230

[Close]

BLAST of Clc10G11050 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 4.4e-105
Identity = 216/314 (68.79%), Postives = 220/314 (70.06%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRSNKT+RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNRANREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRW RLLELRKS A
Sbjct: 301 KRWFRLLELRKSKA 231

[Close]

BLAST of Clc10G11050 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 7.6e-105
Identity = 213/314 (67.83%), Postives = 224/314 (71.34%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISS+FN++APKS+TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRSNKT+RRLITIST+GSRWQGKWT DY+LSLQDLNLEDLVEDE+ NAHVF
Sbjct: 121 ---------RRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNRANREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKSN+
Sbjct: 301 KRWSRLLELRKSNS 231

[Close]

BLAST of Clc10G11050 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 391.0 bits (1003), Expect = 9.9e-105
Identity = 216/314 (68.79%), Postives = 219/314 (69.75%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAE GHLVTARNINSISSSFN+ +APK ATQTFKI ASSKRNDISL              
Sbjct: 1   MAETGHLVTARNINSISSSFNKAAAPKYATQTFKITASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRSNKTSRRLITISTSGSRWQGKWT DYLLSL+DLNLEDLVEDEHKNA VF
Sbjct: 121 ---------RRSNKTSRRLITISTSGSRWQGKWTSDYLLSLRDLNLEDLVEDEHKNARVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNR NREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRTNREIHLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDS VRDTIRL TS KDTCSELCEKSQPTVQYIGAQN ASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSFVRDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNGASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKSNA
Sbjct: 301 KRWSRLLELRKSNA 231

[Close]

BLAST of Clc10G11050 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 375.9 bits (964), Expect = 3.3e-100
Identity = 207/314 (65.92%), Postives = 217/314 (69.11%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +APK ATQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRS+K  RRLITIST+GS WQGKW+CDYLLSLQD NLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNRA RE  LP+
Sbjct: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPE 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKS++
Sbjct: 301 KRWSRLLELRKSHS 231

[Close]

BLAST of Clc10G11050 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.8e-56
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 131 SNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVFINLCIEKHASF 190
           S+KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 191 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 250
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 251 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 310
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of Clc10G11050 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 4.6e-108
Identity = 224/317 (70.66%), Postives = 241/317 (76.03%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV TARNINSISSSFN++APK +TQTFKIKASSKRNDISLV             
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLV------------- 60

Query: 61  SIFKHSSL---FYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYS 120
              KH+ L   F +S     S   +L             + L++F            S+S
Sbjct: 61  ---KHNLLLVIFQISADIPSSIHTFL-------------FHLMIF------------SFS 120

Query: 121 SFPSQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNA 180
           S              NKT+RRLITIST+GSRWQGKWTCDYLLSL+DLNLEDLVEDE+ NA
Sbjct: 121 SLNEAQI-------RNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDENNNA 180

Query: 181 HVFINLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIH 240
           HVFINLCIEKHASFGFTVDG+INTSFTRKCC CS PYCREINANFNVLVLSSNRANREIH
Sbjct: 181 HVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIH 240

Query: 241 LPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAA 300
           LPDIGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE+CEKSQPTVQYIGAQNAA
Sbjct: 241 LPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAA 269

Query: 301 SIDKRWSRLLELRKSNA 314
           SIDKRWSRLLELRKSN+
Sbjct: 301 SIDKRWSRLLELRKSNS 269

[Close]

BLAST of Clc10G11050 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 2.2e-105
Identity = 216/314 (68.79%), Postives = 220/314 (70.06%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRSNKT+RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNRANREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRW RLLELRKS A
Sbjct: 301 KRWFRLLELRKSKA 231

[Close]

BLAST of Clc10G11050 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 2.2e-105
Identity = 216/314 (68.79%), Postives = 220/314 (70.06%), Query Frame = 0


Query: 1   MAEAGHLV-TARNINSISSSFNRSAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAG LV T RNINSISSSFN+ APKS TQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRSNKT+RRLITISTSGSRWQGKWTCDYLLSL+DLNLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDG+INTSFTRKCCTCSLPYCREI ANFNVLVLSSNRANREIHLPD
Sbjct: 181 INLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSE CEKSQPTVQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRW RLLELRKS A
Sbjct: 301 KRWFRLLELRKSKA 231

[Close]

BLAST of Clc10G11050 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.6e-100
Identity = 207/314 (65.92%), Postives = 217/314 (69.11%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +APK ATQTFKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRS+K  RRLITIST+GS WQGKW+CDYLLSLQD NLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSSKPPRRLITISTAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDGKINTSFTRKCCTCS PYCREINANFNVLVLSSNRA RE  LP+
Sbjct: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPE 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKS++
Sbjct: 301 KRWSRLLELRKSHS 231

[Close]

BLAST of Clc10G11050 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.5e-98
Identity = 204/314 (64.97%), Postives = 214/314 (68.15%), Query Frame = 0


Query: 1   MAEAGHLVTARNINSISSSFNR-SAPKSATQTFKIKASSKRNDISLVNTFSFSSFRFLQT 60
           MAEAGHLV A N+NSISSSFN+ +A K ATQ FKIKASSKRNDISL              
Sbjct: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISL-------------- 60

Query: 61  SIFKHSSLFYLSKQFYLSTVPYLMMERKTWLGLSNFWLLLLFCYTINVSRKYSSSYSSFP 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 SQDFFVLMKRRSNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVF 180
                    RRS+K  RRLITIST+GS WQG+W+CDYLLSLQD NLEDLVEDEHKNAHVF
Sbjct: 121 ---------RRSSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVF 180

Query: 181 INLCIEKHASFGFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPD 240
           INLCIEKHASFGFTVDGKINTSF RKCCTCS PYCREINANFNVLVLSSNRA RE  LPD
Sbjct: 181 INLCIEKHASFGFTVDGKINTSFIRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPD 231

Query: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASID 300
           IGGDDPSVIYVKPGLEADLDSLVRDTIRL TS KDTCSELCEKSQP+VQYIGAQNAASID
Sbjct: 241 IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASID 231

Query: 301 KRWSRLLELRKSNA 314
           KRWSRLLELRKS++
Sbjct: 301 KRWSRLLELRKSHS 231

[Close]

BLAST of Clc10G11050 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-57
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 131 SNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVFINLCIEKHASF 190
           S+KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 191 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 250
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 251 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 310
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of Clc10G11050 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-57
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 131 SNKTSRRLITISTSGSRWQGKWTCDYLLSLQDLNLEDLVEDEHKNAHVFINLCIEKHASF 190
           S+KT +RLIT+S S  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 191 GFTVDGKINTSFTRKCCTCSLPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 250
           G +VDG+I TS  RKC  CS  Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 251 KPGLEADLDSLVRDTIRLNTSIKDTCSELCEKSQPTVQYIGAQNAASIDKRWSRLLELRK 310
           +PG EA+LDSLV+DTIRL T  KD CS+ CEKS+PT+ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of Clc10G11050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738565.1	1.5e-105	68.15	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_008461873.1	4.4e-105	68.79	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_011651803.2	7.6e-105	67.83	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_038906104.1	9.9e-105	68.79	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_022983270.1	3.3e-100	65.92	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of Clc10G11050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	6.8e-56	58.33	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of Clc10G11050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9P4	4.6e-108	70.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A5D3C1F8	2.2e-105	68.79	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	2.2e-105	68.79	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A6J1J5E3	1.6e-100	65.92	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	1.5e-98	64.97	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of Clc10G11050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	4.8e-57	58.33	Protein of unknown function (DUF177)	[more]
AT3G19800.2	4.8e-57	58.33	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 194..308 e-value: 2.4E-12 score: 47.0
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G11050.2	Clc10G11050.2	mRNA