Clc09G11645 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G11645
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	UPF0505 protein C16orf62 homolog
Location	ClcChr09: 10364172 .. 10364669 (-)
RNA-Seq Expression	Clc09G11645
Synteny	Clc09G11645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACCCAATCAAATTTGGGTCGACCATTAAAAGAAATAATTCAAGAAAAACTCCAATTTCCACCCAGTGCTACTTTGGATCGAATGCACACTCTATCGTGAGGGGAGCGGAATCTCAAGTCTTGAATGGAGTTCAGACCTCGGGATTACAGTGCCGAAGCAAAGCTGTTTCTGCTTCAGCGGGATCGTGCAGAAATTCATCCTCTGTCTGTTCAATCGTCTCAGCAGGTACAGATATTGGATTTATTTTTCGGTTATCTGTTATTGAATTTTATTCAGCTGGCTGATAAGAAAGTCAGCTTGAAATTATATTCAATTCATTTACGTGGAAGTTTTGAGTTCTTACTGATTTTAGAAGCTAAGTAACAGCTAATTTGTGCGTGAGCGTTGTAGGGAGGGAGGTGGGAGAATAGGATTTTATGGATCATGATATTTCGTGGAAACAACAAGTGGGCAAATAGTGAAGGAAAACCATGTGAGTATCAGTTGTTGCTGTGA

mRNA sequence

TTAACCCAATCAAATTTGGGTCGACCATTAAAAGAAATAATTCAAGAAAAACTCCAATTTCCACCCAGTGCTACTTTGGATCGAATGCACACTCTATCGTGAGGGGAGCGGAATCTCAAGTCTTGAATGGAGTTCAGACCTCGGGATTACAGTGCCGAAGCAAAGCTGTTTCTGCTTCAGCGGGATCGTGCAGAAATTCATCCTCTGTCTGTTCAATCGTCTCAGCAGGGAGGGAGGTGGGAGAATAGGATTTTATGGATCATGATATTTCGTGGAAACAACAAGTGGGCAAATAGTGAAGGAAAACCATGTGAGTATCAGTTGTTGCTGTGA

Coding sequence (CDS)

ATGGAGTTCAGACCTCGGGATTACAGTGCCGAAGCAAAGCTGTTTCTGCTTCAGCGGGATCGTGCAGAAATTCATCCTCTGTCTGTTCAATCGTCTCAGCAGGGAGGGAGGTGGGAGAATAGGATTTTATGGATCATGATATTTCGTGGAAACAACAAGTGGGCAAATAGTGAAGGAAAACCATGTGAGTATCAGTTGTTGCTGTGA

Protein sequence

MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRILWIMIFRGNNKWANSEGKPCEYQLLL

Homology

[Close]

BLAST of Clc09G11645 vs. NCBI nr
Match: XP_038898828.1 (VPS35 endosomal protein-sorting factor-like isoform X4 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAEIHPLSVQSSQQAHIADDRIL 43

[Close]

BLAST of Clc09G11645 vs. NCBI nr
Match: XP_038898827.1 (VPS35 endosomal protein-sorting factor-like isoform X3 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAEIHPLSVQSSQQAHIADDRIL 43

[Close]

BLAST of Clc09G11645 vs. NCBI nr
Match: XP_038898826.1 (VPS35 endosomal protein-sorting factor-like isoform X2 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAEIHPLSVQSSQQAHIADDRIL 43

[Close]

BLAST of Clc09G11645 vs. NCBI nr
Match: XP_038898824.1 (VPS35 endosomal protein-sorting factor-like isoform X1 [Benincasa hispida] >XP_038898825.1 VPS35 endosomal protein-sorting factor-like isoform X1 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAEIHPLSVQSSQQAHIADDRIL 43

[Close]

BLAST of Clc09G11645 vs. NCBI nr
Match: XP_038898829.1 (VPS35 endosomal protein sorting factor-like isoform X5 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAEIHPLSVQSSQQAHIADDRIL 43

[Close]

BLAST of Clc09G11645 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Sbjct: 1  MEFRHRDYTAEAKLFLLGRDRAEIHPLSVHSSQQVNIADDQIL 43

[Close]

BLAST of Clc09G11645 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Sbjct: 1  MEFRHRDYTAEAKLFLLGRDRAEIHPLSVHSSQQVNIADDQIL 43

[Close]

BLAST of Clc09G11645 vs. ExPASy TrEMBL
Match: A0A1S3BHH2 (UPF0505 protein C16orf62 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490132 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Sbjct: 1  MEFRHRDYTAEAKLFLLGRDRAEIHPLSVHSSQQVNIADDQIL 43

[Close]

BLAST of Clc09G11645 vs. ExPASy TrEMBL
Match: A0A1S3BI34 (UPF0505 protein C16orf62 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490132 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Sbjct: 1  MEFRHRDYTAEAKLFLLGRDRAEIHPLSVHSSQQVNIADDQIL 43

[Close]

BLAST of Clc09G11645 vs. ExPASy TrEMBL
Match: A0A6J1IWD8 (UPF0505 protein C16orf62 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480518 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL 44
          MEFRPRDYSAEAKLFLL RDRAE  PLSV SSQQ    +++I+
Sbjct: 1  MEFRPRDYSAEAKLFLLHRDRAETDPLSVPSSQQANIADDQIV 43

The following BLAST results are available for this feature:

BLAST of Clc09G11645 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898828.1	2.9e-09	83.72	VPS35 endosomal protein-sorting factor-like isoform X4 [Benincasa hispida]	[more]
XP_038898827.1	2.9e-09	83.72	VPS35 endosomal protein-sorting factor-like isoform X3 [Benincasa hispida]	[more]
XP_038898826.1	2.9e-09	83.72	VPS35 endosomal protein-sorting factor-like isoform X2 [Benincasa hispida]	[more]
XP_038898824.1	2.9e-09	83.72	VPS35 endosomal protein-sorting factor-like isoform X1 [Benincasa hispida] >XP_0...	[more]
XP_038898829.1	2.9e-09	83.72	VPS35 endosomal protein sorting factor-like isoform X5 [Benincasa hispida]	[more]

BLAST of Clc09G11645 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G11645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SG80	8.5e-07	74.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DHC0	8.5e-07	74.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3BHH2	8.5e-07	74.42	UPF0505 protein C16orf62 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A1S3BI34	8.5e-07	74.42	UPF0505 protein C16orf62 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490...	[more]
A0A6J1IWD8	1.1e-06	72.09	UPF0505 protein C16orf62 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480518 PE=...	[more]

BLAST of Clc09G11645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G11645.1	Clc09G11645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0015031	protein transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005768	endosome
cellular_component	GO:0030906	retromer, cargo-selective complex
molecular_function	GO:0003676	nucleic acid binding