Clc08G17390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G17390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Zinc finger CCCH domain-containing protein 20
Location	ClcChr08: 27737801 .. 27739383 (+)
RNA-Seq Expression	Clc08G17390
Synteny	Clc08G17390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAAGGAAAAAGAAAGGTGCAGCACATTAGCATGGACATGAGAACAGAGTAGTATACCCGAGGGATTGGCTAGATATTTAACGGGAGAAAACAGAGGAAGTTGAGTAACCGACCGCGGTTGAAAACCAAAATCCCACCACCGTCTCTTCCGGTCTCCGCCTGAAAAACTGGCACTTCCCATTTCATTTCCATCTTCCAAAACCCTTCCACTACATTCCTCTCTCACAATTCATCATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCCCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTGCGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAATTCCAGAAGGAGGAAGAAAAAGAAGAAGAAGCCATAGATTCGAAATTTTAGTTTAATTAAGTTTCTGTGAATTAAATCCTTTCCTCCCATTTCTTTTTACTTTTTGTATTTTGTATTTTTGTTTATTTAGTTTCTACTAATTTCTGTAAATGGGTGAATGTTAATTTGTGGAGGTAAGTGAGTGAGTTACAATTTCCCTGATTTGTACAGAAACTGAATGGGAATTCAATAAAATTTGTTTCTCGACTGAAATATGGAGGATACGTACAAAAGGAGGGATTTTGAAGTTGAAATAGTGAAGATGAAGGTAGATTAATTTAATATTGTACAAAATCCAAAACATACTGCTGCTGGTGGCTGCTCACTCAATCCTTATCCTTCTTGTTTCTATAAGCTTTAAATCAAGTTCATCATGGGAGCTTGTT

mRNA sequence

AGGAAAAGGAAAAAGAAAGGTGCAGCACATTAGCATGGACATGAGAACAGAGTAGTATACCCGAGGGATTGGCTAGATATTTAACGGGAGAAAACAGAGGAAGTTGAGTAACCGACCGCGGTTGAAAACCAAAATCCCACCACCGTCTCTTCCGGTCTCCGCCTGAAAAACTGGCACTTCCCATTTCATTTCCATCTTCCAAAACCCTTCCACTACATTCCTCTCTCACAATTCATCATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCCCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTGCGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAATTCCAGAAGGAGGAAGAAAAAGAAGAAGAAGCCATAGATTCGAAATTTTAGTTTAATTAAGTTTCTGTGAATTAAATCCTTTCCTCCCATTTCTTTTTACTTTTTGTATTTTGTATTTTTGTTTATTTAGTTTCTACTAATTTCTGTAAATGGGTGAATGTTAATTTGTGGAGGTAAGTGAGTGAGTTACAATTTCCCTGATTTGTACAGAAACTGAATGGGAATTCAATAAAATTTGTTTCTCGACTGAAATATGGAGGATACGTACAAAAGGAGGGATTTTGAAGTTGAAATAGTGAAGATGAAGGTAGATTAATTTAATATTGTACAAAATCCAAAACATACTGCTGCTGGTGGCTGCTCACTCAATCCTTATCCTTCTTGTTTCTATAAGCTTTAAATCAAGTTCATCATGGGAGCTTGTT

Coding sequence (CDS)

ATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCCCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTGCGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA

Protein sequence

MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN

Homology

[Close]

BLAST of Clc08G17390 vs. NCBI nr
Match: KAA0060981.1 (zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 592.4 bits (1526), Expect = 2.2e-165
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPTAHIS+WDSLDDP+AAI SYF+AGHVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VD FSCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRAREIAVPAVSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHS  LDELKTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP+LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Clc08G17390 vs. NCBI nr
Match: XP_008444505.1 (PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [Cucumis melo])

HSP 1 Score: 587.4 bits (1513), Expect = 7.0e-164
Identity = 281/306 (91.83%), Postives = 292/306 (95.42%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPTAHIS+WDSLDDP+AAI SYF+AGHVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VD FSCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRAREIAVPAVSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHS  LDE KTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP+LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Clc08G17390 vs. NCBI nr
Match: KGN62412.1 (hypothetical protein Csa_018765 [Cucumis sativus])

HSP 1 Score: 575.9 bits (1483), Expect = 2.1e-160
Identity = 275/307 (89.58%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDA+SCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRARE+A+PAVSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHS  LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP+LRR+SG AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Clc08G17390 vs. NCBI nr
Match: NP_001295793.1 (zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >CAI30889.1 putative CCCH-type zinc finger protein CsSEF1 [Cucumis sativus])

HSP 1 Score: 570.9 bits (1470), Expect = 6.8e-159
Identity = 273/307 (88.93%), Postives = 289/307 (94.14%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDA+SCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRARE+A+PAVSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHS  LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESLSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP+LRR+SG AFDLWDR NEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRGNEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Clc08G17390 vs. NCBI nr
Match: XP_022997351.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 567.4 bits (1461), Expect = 7.5e-158
Identity = 269/306 (87.91%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESM LNPT HISSWDSLDDPAAAIPSYFTAG+VSPLDSPTAA+MD+DSSFWED DLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDAF+CD FRMYEFKVR CARGRSHDWTKCPYAH GEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCC KGDACEYAHGVFE WLHPDRYRTQPCRDG  CRRRVCFFAHSSEQLRIPGKQS+R
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPR REIA PAVSSPTSIL+S SSDSPPMSPISP+ +GGESFSRLVALMH+ H DELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P +SGF PS RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMR+NSV+RVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 SAGSRN 307
            AGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.7e-73
Identity = 150/330 (45.45%), Postives = 192/330 (58.18%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDL-------PS 68
           NPT HI  W  L +       Y +    S +    A L  +  S   DPD         S
Sbjct: 11  NPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPDS 70

Query: 69  AVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRH 128
            +DA++CD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF+YSGT CP+ R 
Sbjct: 71  PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK 130

Query: 129 GCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRS 188
           GCCK+GDACE++HGVFE WLHP RYRTQPC+DG  CRRRVCFFAHS +Q+R+   QS   
Sbjct: 131 GCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDR 190

Query: 189 PRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSR---------LVALMHSF 248
             + ++  P +       +SPSS+SPP+SP     S     SR         +VA + + 
Sbjct: 191 VDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNL 250

Query: 249 HLDELKT------NPAVSGFS------------------PSLRRNSGAFDLWDRENEEEP 299
            L+++K+      N  + G+                   P+     G  ++W+   EEEP
Sbjct: 251 QLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEP 310

[Close]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-70
Identity = 156/320 (48.75%), Postives = 199/320 (62.19%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAGHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPSA------VDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  S        D+FS D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAV--PAVSSPTSILMSPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++       +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSFHLDE---LKTNPAVSG----FSPSLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M    L+      ++P  S     FS SLR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-65
Identity = 149/335 (44.48%), Postives = 190/335 (56.72%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWED---- 60
           MI E+    PT  I  W  L++   +   +F+    SP  S   AL         +    
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTS--EFFSPVMNSPDCSMLEALAGLQRYLPSNEPDP 61

Query: 61  ---PDL---PSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 120
              PDL    S +DA+SCD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK++
Sbjct: 62  ESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYH 121

Query: 121 YSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQ 180
           YSGT CPD R G CKKGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++CFFAHS +Q
Sbjct: 122 YSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQ 181

Query: 181 LRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSP-----ISPVIS------GG 240
           LR    +S     + +++ P  +    + +SP S SPPMSP      SP+        G 
Sbjct: 182 LRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGS 241

Query: 241 ESFSRLVALMHSFHLDELKT---NPAVSGFS--------------PSLRRNSGAFDLWDR 297
            S + +V    +   + +K+   N  + GF               P+     G  D+W+ 
Sbjct: 242 CSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEY 301

[Close]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.5e-60
Identity = 136/301 (45.18%), Postives = 179/301 (59.47%), Query Frame = 0


Query: 59  LPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPD 118
           + +AVDA++CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK++YSGT CPD
Sbjct: 65  MAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPD 124

Query: 119 LRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRI-PGKQ 178
            R G CK+GDACEYAHGVFE WLHP RYRTQPC+DGT CRRRVCFFAH+ +QLR+ P +Q
Sbjct: 125 FRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQ 184

Query: 179 SLRSPRA---------------REIAVPAV-------SSPTSILM----SPSSDSPPMSP 238
           S  SPR+               R  A  +        SSPTS LM    SP S+SPP+SP
Sbjct: 185 S--SPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSP 244

Query: 239 --ISPVISG-----GESFSRLVALMHSFHLDELKTNPAVSGFSPSL-------RRNSGAF 294
              + +  G     G   + ++A      L+++K++P+     PS        +  +G +
Sbjct: 245 DGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLY 304

[Close]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-56
Identity = 143/376 (38.03%), Postives = 189/376 (50.27%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYF--TAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAF 68
           +P + +      +    A P +   T  H  P +   AA  + +++      + +AVDA+
Sbjct: 19  SPVSGVEGGGGRESEVVAAPYHLLDTLRHYLPSNEAAAAEDEEEAA-----AVAAAVDAY 78

Query: 69  SCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKK 128
           +CD+FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSGT CPD R G CK+
Sbjct: 79  ACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKR 138

Query: 129 GDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRI---PGKQSLRSPR 188
           GDACE+AHGVFE WLHP RYRTQPC+DGT CRRRVCFFAH+ +QLR+     +Q   SPR
Sbjct: 139 GDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPR 198

Query: 189 ------AREIAVPAV-----------------------SSPTSILMSPSSDSPPMS-PIS 248
                 A   A P                         SSPTS L+SP    P  S P+S
Sbjct: 199 GCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLS 258

Query: 249 PVISG----------GESFSRLVALMHSFHLDELKTNPAVSGF--------SPSLRRNSG 304
           P  +G          G   + +   +    L   ++ P+ + F        SP     + 
Sbjct: 259 PDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAA 318

[Close]

BLAST of Clc08G17390 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.1e-165
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPTAHIS+WDSLDDP+AAI SYF+AGHVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VD FSCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRAREIAVPAVSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHS  LDELKTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP+LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Clc08G17390 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 3.4e-164
Identity = 281/306 (91.83%), Postives = 292/306 (95.42%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPTAHIS+WDSLDDP+AAI SYF+AGHVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VD FSCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRAREIAVPAVSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHS  LDE KTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P VS FSP+LRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 SAGSRN 307
           SAGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of Clc08G17390 vs. ExPASy TrEMBL
Match: A0A0A0LNN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.0e-160
Identity = 275/307 (89.58%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDA+SCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRARE+A+PAVSSPTSIL+SPSSDSPP+SPISPVISGGESFSRLVALMHS  LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP+LRR+SG AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Clc08G17390 vs. ExPASy TrEMBL
Match: Q5NDD3 (Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c5 PE=2 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.3e-159
Identity = 273/307 (88.93%), Postives = 289/307 (94.14%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESMLLNPT+HIS+WDSLDDP+ AI SYF+  HVSPLDSPTAALMDFDSS WEDPDLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDA+SCDQFRMYEFKVR+CARGRSHDWTKCPYAHTGEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCCKKGDACEYAHG FE WLHPDRYRTQPCRDGTGCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPRARE+A+PAVSSPTSIL+SPSSDSPP+SPISPVISGGES SRLVALMHS  LDELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESLSRLVALMHSLRLDELKTN 240

Query: 241 PAVSGFSPSLRRNSG-AFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPL 300
           P VS FSP+LRR+SG AFDLWDR NEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRGNEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ISAGSRN 307
           ISAGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of Clc08G17390 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 3.7e-158
Identity = 269/306 (87.91%), Postives = 283/306 (92.48%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLP 60
           MI ESM LNPT HISSWDSLDDPAAAIPSYFTAG+VSPLDSPTAA+MD+DSSFWED DLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  SAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLR 120
           + VDAF+CD FRMYEFKVR CARGRSHDWTKCPYAH GEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLR 180
           HGCC KGDACEYAHGVFE WLHPDRYRTQPCRDG  CRRRVCFFAHSSEQLRIPGKQS+R
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTN 240
           SPR REIA PAVSSPTSIL+S SSDSPPMSPISP+ +GGESFSRLVALMH+ H DELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300
           P +SGF PS RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMR+NSV+RVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 SAGSRN 307
            AGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of Clc08G17390 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-74
Identity = 150/330 (45.45%), Postives = 192/330 (58.18%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDL-------PS 68
           NPT HI  W  L +       Y +    S +    A L  +  S   DPD         S
Sbjct: 11  NPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDSDPDLSGPDS 70

Query: 69  AVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRH 128
            +DA++CD FRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRKF+YSGT CP+ R 
Sbjct: 71  PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRK 130

Query: 129 GCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRS 188
           GCCK+GDACE++HGVFE WLHP RYRTQPC+DG  CRRRVCFFAHS +Q+R+   QS   
Sbjct: 131 GCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDR 190

Query: 189 PRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSR---------LVALMHSF 248
             + ++  P +       +SPSS+SPP+SP     S     SR         +VA + + 
Sbjct: 191 VDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVASLRNL 250

Query: 249 HLDELKT------NPAVSGFS------------------PSLRRNSGAFDLWDRENEEEP 299
            L+++K+      N  + G+                   P+     G  ++W+   EEEP
Sbjct: 251 QLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENGLEEEP 310

[Close]

BLAST of Clc08G17390 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-71
Identity = 156/320 (48.75%), Postives = 199/320 (62.19%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAGHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPSA------VDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  S        D+FS D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAV--PAVSSPTSILMSPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++       +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSFHLDE---LKTNPAVSG----FSPSLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M    L+      ++P  S     FS SLR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Clc08G17390 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-71
Identity = 156/320 (48.75%), Postives = 199/320 (62.19%), Query Frame = 0


Query: 9   NPTAHISSWDSLDDPAAAIPSYFTAGHVSPLD----SPTAALMDFDSSF--------WED 68
           +PT HI  WD ++DP A I S F++ +++ ++    SP+  L  F S F          D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  PDLPSA------VDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 128
            D  S        D+FS D+FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C++GD+CE++HGVFE WLHP RYRTQPC+DGT CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSLRSPRAREIAV--PAVSSPTSILMSPS----SDSPPMSPISPVISGGESFSR 248
           LR+     L      ++       +SPTSIL+SPS    S+SPP+SP         S   
Sbjct: 191 LRV-----LPCSLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLSP---------STGE 250

Query: 249 LVALMHSFHLDE---LKTNPAVSG----FSPSLRRNSGAFDLWDR----ENEEEPAMERV 294
           L+A M    L+      ++P  S     FS SLR    A   W R    E EE PAME V
Sbjct: 251 LIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLRPIQAA--TWPRIREFEIEEAPAMEFV 310

[Close]

BLAST of Clc08G17390 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-66
Identity = 149/335 (44.48%), Postives = 190/335 (56.72%), Query Frame = 0


Query: 1   MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWED---- 60
           MI E+    PT  I  W  L++   +   +F+    SP  S   AL         +    
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTS--EFFSPVMNSPDCSMLEALAGLQRYLPSNEPDP 61

Query: 61  ---PDL---PSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFN 120
              PDL    S +DA+SCD FRMY+FKVR CARGRSHDWT+CPYAH GEKARRRDPRK++
Sbjct: 62  ESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYH 121

Query: 121 YSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQ 180
           YSGT CPD R G CKKGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++CFFAHS +Q
Sbjct: 122 YSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQ 181

Query: 181 LRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSP-----ISPVIS------GG 240
           LR    +S     + +++ P  +    + +SP S SPPMSP      SP+        G 
Sbjct: 182 LRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGS 241

Query: 241 ESFSRLVALMHSFHLDELKT---NPAVSGFS--------------PSLRRNSGAFDLWDR 297
            S + +V    +   + +K+   N  + GF               P+     G  D+W+ 
Sbjct: 242 CSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLDIWEY 301

[Close]

BLAST of Clc08G17390 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-48
Identity = 100/199 (50.25%), Postives = 127/199 (63.82%), Query Frame = 0


Query: 33  AGHVSPLDSP-TAALMDFDSSFWEDPDLPSAVDA-FSCDQFRMYEFKVRTCARGRSHDWT 92
           +G  SPL SP      +F   +  DP LP   ++ ++ D+FRMY FKVR C+R  SHDWT
Sbjct: 222 SGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWT 281

Query: 93  KCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQP 152
           +CP+ H GE ARRRDPRKF+YS   CPD R G C++GD CEYAHGVFE WLHP +YRT+ 
Sbjct: 282 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRL 341

Query: 153 CRDGTGCRRRVCFFAHSSEQLR---IPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSP 212
           C+DGTGC RRVCFFAH+ E+LR        ++ SPR+      A+    S+L    S   
Sbjct: 342 CKDGTGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAAL----SLLPGSPSGVS 401

Query: 213 PMSPISPVISG-GESFSRL 226
            MSP+SP  +G G S S +
Sbjct: 402 VMSPLSPSAAGNGMSHSNM 416

The following BLAST results are available for this feature:

BLAST of Clc08G17390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060981.1	2.2e-165	92.48	zinc finger CCCH domain-containing protein 20 [Cucumis melo var. makuwa]	[more]
XP_008444505.1	7.0e-164	91.83	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 [C...	[more]
KGN62412.1	2.1e-160	89.58	hypothetical protein Csa_018765 [Cucumis sativus]	[more]
NP_001295793.1	6.8e-159	88.93	zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >CAI30889.1 puta...	[more]
XP_022997351.1	7.5e-158	87.91	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]

BLAST of Clc08G17390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	2.7e-73	45.45	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	4.7e-70	48.75	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	1.6e-65	44.48	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	7.5e-60	45.18	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	1.0e-56	38.03	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Clc08G17390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5C0	1.1e-165	92.48	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	3.4e-164	91.83	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A0A0LNN8	1.0e-160	89.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1	[more]
Q5NDD3	3.3e-159	88.93	Putative CCCH-type zinc finger protein CsSEF1 OS=Cucumis sativus OX=3659 GN=se2c...	[more]
A0A6J1K790	3.7e-158	87.91	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Clc08G17390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.9e-74	45.45	CCCH-type zinc finger family protein	[more]
AT2G25900.1	3.3e-71	48.75	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	3.3e-71	48.75	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	1.1e-66	44.48	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	1.0e-48	50.25	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 110..136 e-value: 0.017 score: 24.3 coord: 145..168 e-value: 31.0 score: 4.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 110..137 score: 11.863692
None	No IPR available	GENE3D	4.10.1000.10		coord: 107..178 e-value: 1.1E-6 score: 30.4
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 8..302
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 8..302

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G17390.1	Clc08G17390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding