Clc08G12040 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G12040
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 23289949 .. 23292434 (-)
RNA-Seq ExpressionClc08G12040
SyntenyClc08G12040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCTTCTCCGCCGTCGCTCGCCGTCATTCGTCAGCCACCGTCGTCCTCACCGCGACCGCTCGAGGTTCCAGCCGCTGTCCGACCGTTCCGTCCAGTCGCGAGGAGTCCGACGCCCCTCCCTCTCGTTTTTCAACACGGCGGCGACACTGCCATGCACGTCGCCGTCAGATCGCCTTTCACGCCGGATTCTTGGGATTTTGGTAAGAATGTTGATTCTCTTGTTTTATCATGAGTAGCCATCGTGGTTGATACCCTCTGTGTTGGATTTTTAAATTCAACCTCGGAAGGAACTTTGGAACCGGAAGCAACGATTGGACCAAATTGTGGTGAGTAAGAGTACTGTGCTATTGTTGTTGGGTGGTTGAAAATTGGGTTTTCTTTTTTCTAACCCTTAATACTTGTAATTGGATAGGTTAGACTCATGCTTGAAGTTGGAAGAGTATTGAGACCATTGCACTTTGAGTAAAGTTATTGGGTCCAATTCTAGGTTATGATTCAAAAACTTTGTGTGAATTTGTTGGCTTGTAGCTACGCCTGGCCTCATGAACCTAAGAAATGTTAAGAGAAATTTGGTCTATGGTGTTGTATGGGTACTATGAATTGAAAAAATTATCATTAAGTTATGATATCTATTATTGAATGCATGTTGAAATGACGTTATCCTACCTATTGGGCCAATTTCTTCGTGCCTATGATAGGAGGATAGCAATTTCACATAGTAGGCCCGGTAGTTTTCGTACATGGGGCTAGTTTATGTGCATCATGTTATGTCTTTCTAATATAGACTCTAATTGCCAATTGATTGCCAATTCTTTTTTATTGTTTATTTTTTTATTTGTTTAATTTGTTTTTATTTCATGTAATTCGATTTAATTAATCTATTCAATTTATTTTTTTAAAATAAAATATATTCTATTGCTTGATTCAAAAAGTAGCGTCATGTTGGTTAGAAAAGAGTCAAGGTTCGTTATAAAAAATCAAATAGTTATCAAACGGGACTTAAATTTTAGTTTTTGGTTTTTTAAAATTAAGCTTATAAACATTATTTTTATATGAAATTTTTTTCTTTTGTTATCCACTTTTCATCAATGTTTTTGAAAACCAACCTTAAATTTGACAAACTAAAAAAAATAGTTTTTAAAAACGTGTTATTTTTAGAATTTTTGTTCAAAAAATGTGAAAATCATAATATGAAGTTTATAAGAAAGCAAGCAAAAATTTTAATTAACTTTTGGAGGAAGAATATGGATCTGTTTGGATTGACTTAAGAAAAAATGTTTTTCAAAAAACTAATTTTTATTTAAATATTTTTTATAAAAACTTATTAAAATACACTTATTTTTGAATAGTTGCCAAATACACTTATTAAAATTACTTATTAAAAGAAAAGTTATTTTGAATAGTTGCCAAATACTCCAATTTCTTCCAAAATCACTTATTTTTCAAATTAAACCCTTAAAAATATATTCCAAACACATCCTACAAAATAATAAAAGATTTGAGATTAGGCTGAATTCATAGCTAAACAAATAAAATTCATTCATAATATGTTGAGACAGCATTACTAAAACAAAGTTTTGGTTATCCTTAAGAAGAAAGAAGAAGAAAGAATAAGGTTCTGTGCCAAAATAATATTTCAAAAAGCTTTATTGCACTCTCAAATGCATTAAAATAAATTAATAAATCTTAAAATTATGAAACACTATGTGTTTGAATACCTTTTCAAGTGTTTAATTTAAAAAATAAGTCAAGAAATACAAGTTTGACCGCCACTATAAATTGATTTTGAAATTAATTAGTGTTTAAATGAAAATGAATCTTTTAAAAACATTTATTTTTTAAGTTAGTCCAAATGGACTCTTAATAACTAAATTAGTATAACTATACTAGACTAATAATCTAGCATCCCATGGAACATGACCAGCGCAATTCAATGGAAAGTAAAATATTAATTATTGTTAATGGTAAAATATGGTTAAAGAAATTCATCTGACCTTTATGTGCTACCAACTAAATTTGGAACTTGGAGAAAGATAACACCCTAAAACGATAAGAAAAGAACACTAGTGCCTACCACAAAAACTCTTGAAGCTTGAGTTAATTTCTTGCAAAGAGTCGAAGCAAGTTTTTCAACAAGAAGATGAACTTACCTCAATTTGTTCACAAATAGGACTTCAGAAAGCTAGATCAAGCTTGCACAAAGGAAATGGTCAAGGTTGGCTGGCTTCGACCTCGACCTCCGAGGCATATGCAAGTTTTTTGGTTGAATGGCCCACTTGTCTCCAATTGTGGGCATGCAAGGGGCAAGCCCAAGAACAGGACCAAACTTAGTGGTCGCGGGCCGTCTTGGATTGGATGTCCTGATTGCCTCACTCACTTTCCAACTGTGCCTCTCCTAGACCTATTTCTTGCCTATTTTGGATCCATTTTGGAGGAGGCAACCTTCTTGACTTTATCTTCAAATTTTGACCTCCTCTCTTAA

mRNA sequence

ATGTTCCTTCTCCGCCGTCGCTCGCCGTCATTCGTCAGCCACCGTCGTCCTCACCGCGACCGCTCGAGGTTCCAGCCGCTGTCCGACCGTTCCGTCCAGTCGCGAGGAGTCCGACGCCCCTCCCTCTCGTTTTTCAACACGGCGGCGACACTGCCATGCACGTCGCCGTCAGATCGCCTTTCACGCCGGATTCTTGGGATTTTGGAACTTTGGAACCGGAAGCAACGATTGGACCAAATTGTGGTTAGACTCATGCTTGAAGTTGGAAGAGACTTCAGAAAGCTAGATCAAGCTTGCACAAAGGAAATGGTCAAGGTTGGCTGGCTTCGACCTCGACCTCCGAGGCATATGCAAGTTTTTTGGTTGAATGGCCCACTTGTCTCCAATTGTGGGCATGCAAGGGGCAAGCCCAAGAACAGGACCAAACTTAGTGGTCGCGGGCCGTCTTGGATTGGATGTCCTGATTGCCTCACTCACTTTCCAACTGTGCCTCTCCTAGACCTATTTCTTGCCTATTTTGGATCCATTTTGGAGGAGGCAACCTTCTTGACTTTATCTTCAAATTTTGACCTCCTCTCTTAA

Coding sequence (CDS)

ATGTTCCTTCTCCGCCGTCGCTCGCCGTCATTCGTCAGCCACCGTCGTCCTCACCGCGACCGCTCGAGGTTCCAGCCGCTGTCCGACCGTTCCGTCCAGTCGCGAGGAGTCCGACGCCCCTCCCTCTCGTTTTTCAACACGGCGGCGACACTGCCATGCACGTCGCCGTCAGATCGCCTTTCACGCCGGATTCTTGGGATTTTGGAACTTTGGAACCGGAAGCAACGATTGGACCAAATTGTGGTTAGACTCATGCTTGAAGTTGGAAGAGACTTCAGAAAGCTAGATCAAGCTTGCACAAAGGAAATGGTCAAGGTTGGCTGGCTTCGACCTCGACCTCCGAGGCATATGCAAGTTTTTTGGTTGAATGGCCCACTTGTCTCCAATTGTGGGCATGCAAGGGGCAAGCCCAAGAACAGGACCAAACTTAGTGGTCGCGGGCCGTCTTGGATTGGATGTCCTGATTGCCTCACTCACTTTCCAACTGTGCCTCTCCTAGACCTATTTCTTGCCTATTTTGGATCCATTTTGGAGGAGGCAACCTTCTTGACTTTATCTTCAAATTTTGACCTCCTCTCTTAA

Protein sequence

MFLLRRRSPSFVSHRRPHRDRSRFQPLSDRSVQSRGVRRPSLSFFNTAATLPCTSPSDRLSRRILGILELWNRKQRLDQIVVRLMLEVGRDFRKLDQACTKEMVKVGWLRPRPPRHMQVFWLNGPLVSNCGHARGKPKNRTKLSGRGPSWIGCPDCLTHFPTVPLLDLFLAYFGSILEEATFLTLSSNFDLLS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G12040.1Clc08G12040.1mRNA