Clc08G05240 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G05240
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type E3 ubiquitin transferase
LocationClcChr08: 16151252 .. 16151572 (-)
RNA-Seq ExpressionClc08G05240
SyntenyClc08G05240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

mRNA sequence

ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

Coding sequence (CDS)

ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

Protein sequence

MQALWDDSITPKNTLHQLLAISHTIGFDAIGFLVNLDLDVQSRRNLVQPTRISCKLVIPLSLQDDLHRASLKLKKKSLVPIALVPFTYSLFFSPLLQSSKIELLTT
Homology
[Close]
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_038899078.1 (U-box domain-containing protein 30-like isoform X1 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_038899079.1 (U-box domain-containing protein 30-like isoform X2 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 33  MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 92

[Close]
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_022981987.1 (U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box domain-containing protein 30-like [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_022941310.1 (U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-box domain-containing protein 30-like [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_023524197.1 (U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_023524198.1 U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A2C9U1C6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLLAISHTIGF--------DAIGFLVNLDLDVQSRRNLVQPTRI 54
           +Q LWDD+++PK TL QL+    +  +        +AIGFLVNLDLD+ SR   +QP +I
Sbjct: 61  LQELWDDTVSPKTTLQQLILRGFSQRYLAMKKRSREAIGFLVNLDLDLTSREIFLQPAKI 120

[Close]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1IVG5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1FKS4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1INU1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 102 MQELWDDSITPNNTLHQLINSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161

[Close]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1FA26 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0 

Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 102 MQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161

The following BLAST results are available for this feature:
BLAST of Clc08G05240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899078.15.7e-0431.20U-box domain-containing protein 30-like isoform X1 [Benincasa hispida][more]
XP_038899079.15.7e-0431.20U-box domain-containing protein 30-like isoform X2 [Benincasa hispida][more]
XP_022981987.17.4e-0430.95U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box... [more]
XP_022941310.17.4e-0430.95U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-b... [more]
XP_023524197.17.4e-0430.95U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_0235241... [more]
BLAST of Clc08G05240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2C9U1C67.3e-0545.90Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=... [more]
A0A6J1IVG53.6e-0430.95RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 P... [more]
A0A6J1FKS43.6e-0430.95RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650... [more]
A0A6J1INU13.6e-0430.95RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 P... [more]
A0A6J1FA263.6e-0430.95RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653... [more]
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G05240.1Clc08G05240.1mRNA