Clc08G05160 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G05160
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 15955906 .. 15957141 (-)
RNA-Seq ExpressionClc08G05160
SyntenyClc08G05160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGCGGCGCCACTCCCACAAGGCGGCGGCGATTTCTCTCTTCTTTCTTCATTATGGTTATCTTCATCTGGGTCGTCTTCTGCCACCAAGCCGCGGCCGTTGCAAGACCATTACCGGAAAGTCAAAATACAGAGCAAGCGGATGTCAGGGCCACCGCCGCCGGAAGCAAGGAGAAGCTTGTCCGGAAGTATTTCAATGGAAGGAGTTTCAGTTCGATAGAGTTTGAAGAGAACAAACGAACAGTGCCCAGCTGCCCTGATCCTCTCCATAACTAGTACAATAATTCTTTTTTGTTTTTGTTTTTGTTTTAAAATCTTTGTGATTGGGGAAAACAAGGGGTGTTTTGGGACTTACTTATAATTTAGAGTGCTATTATAAATGAAAGAAAAAGAATGGAGGTTTGATGATCTGTACAGAAAAGTAGAAAATCGGAAATACCACTTTTGGAGAACTTTGGCAGAGGAGTAAGAAGAAAGAAGAAAGGAGAAAGAAGAGGAAGAATGGCAGAGATGCGATTTGCAATCACAGAATCGTGTCTTTTTTTCTTTTTTTCTTTTTTTCTTTTCCCGTAATTATTGTATATTCTTTTTATTTTTTATTTTTTATTTTTATTTTTATTTATTTTTATTTTTTTAAATTTTGTAGGAGTAATTTTGTTTGTCCTCTGTTCTGCGAAGGAAAAAGAAAAGGGAAGCTTTTTCTGGGTCATCAGTGGTGTGTTGAAATCTGCTTTCACTGCGTGTTCTTTTATTATTATTATTATTATTTTTTATTTATTTTTATCTGTCTTTGAATTATTTGCGAGAGCTTTGTCAGATTTTTCATTTAATACTTCTTTTAAATTTTTAATTATAACGAGATGTTCAAGTTTTTCTTTTTCCTTCTTTCTTCTTTTATCATGTCATTTACCACTAAAAGAAGCTGATTTTGGTAGATTTAAATATAGAGAATTTAAGAGAGGTTGCTAAATTCCAATTATTAGGGGGGTATAGGTAGATCTCCTATTCGACTAGCCCTCAATATTTAAATCTTCTATTTTAAATTAATTTTGTTTTCTTTTTTTCTTTTTATTCCGTTTATCTTCTCAAATTTCTATTTAGAATTACATTTTTCAATTTGTAAACTTTAATTTTTTGTTTTGTTAAAAGAACTTAGATTTTGTATTCTTTTAGACCGTATATTACATCTATCTCTTATCTCTCTATCAAACAGTTCGGAGAATCCCTCCATGA

mRNA sequence

ATGTACGGCGGCGCCACTCCCACAAGGCGGCGGCGATTTCTCTCTTCTTTCTTCATTATGGTTATCTTCATCTGGGTCGTCTTCTGCCACCAAGCCGCGGCCGTTGCAAGACCATTACCGGAAAGTCAAAATACAGAGCAAGCGGATGTCAGGGCCACCGCCGCCGGAAGCAAGGAGAAGCTTTGCCCAGCTGCCCTGATCCTCTCCATAACTAGAGTAATTTTGTTTGTCCTCTGTTCTGCGAAGGAAAAAGAAAAGGGAAGCTTTTTCTGGGTCATCAGTGTTCGGAGAATCCCTCCATGA

Coding sequence (CDS)

ATGTACGGCGGCGCCACTCCCACAAGGCGGCGGCGATTTCTCTCTTCTTTCTTCATTATGGTTATCTTCATCTGGGTCGTCTTCTGCCACCAAGCCGCGGCCGTTGCAAGACCATTACCGGAAAGTCAAAATACAGAGCAAGCGGATGTCAGGGCCACCGCCGCCGGAAGCAAGGAGAAGCTTTGCCCAGCTGCCCTGATCCTCTCCATAACTAGAGTAATTTTGTTTGTCCTCTGTTCTGCGAAGGAAAAAGAAAAGGGAAGCTTTTTCTGGGTCATCAGTGTTCGGAGAATCCCTCCATGA

Protein sequence

MYGGATPTRRRRFLSSFFIMVIFIWVVFCHQAAAVARPLPESQNTEQADVRATAAGSKEKLCPAALILSITRVILFVLCSAKEKEKGSFFWVISVRRIPP
Homology
[Close]
BLAST of Clc08G05160 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 3  GGAT-PTRRRRFLSSFFIMVIFIWVVFC---HQAAAVARPLPESQNTEQADVRATAAGSK 62
          GGAT P RRRRFLSSFF+++ FIWVVFC   HQA AVARP P +Q  EQ+   +  AGSK
Sbjct: 10 GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS--VSGGAGSK 69

[Close]
BLAST of Clc08G05160 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 3  GGAT-PTRRRRFLSSFFIMVIFIWVVFC---HQAAAVARPLPESQNTEQADVRATAAGSK 62
          GGAT P RRRRFLSSFF+++ FIWVVFC   HQA AVARP P +Q  EQ+   +  AGSK
Sbjct: 4  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS--VSGGAGSK 63

[Close]
BLAST of Clc08G05160 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 1  MYGGATPTRRRRFLSSFFIMVIFIWVVFCHQAAAV-ARPLPESQNTEQADVRATAAGSKE 60
          M GG TPTR+RRFLS+  +M +FIWVVFCHQ  AV AR  PE+   E+  V     GSKE
Sbjct: 1  MCGGVTPTRQRRFLSTLLVMALFIWVVFCHQPGAVSARLFPENLIPEETHV-GGGGGSKE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 61

[Close]
BLAST of Clc08G05160 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 4  GATPTRRRRFLSSFFIMVIFIWVVFCHQAA-AVARPLPESQNTEQADVRATAAGSKEK 61
          GATP+RRRR LS FFI++ FIWVV  +QAA A+ARPL ES+N +       A GSKEK
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGNQAASAMARPLEESENPDMG-----AVGSKEK 57

[Close]
BLAST of Clc08G05160 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 4  GATPTRRRRFLSSFFIMVIFIWVVFCHQAA-AVARPLPESQNTEQADVRATAAGSKEK 61
          GATP+RRRR LS FFI++ FIWVV  +QAA A+ARPL ES+N +       A GSKEK
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGNQAASAMARPLEESENPDMG-----AVGSKEK 57

The following BLAST results are available for this feature:
BLAST of Clc08G05160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579278.11.1e-0965.08CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7016789.11.1e-0965.08hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601785.11.0e-0758.06CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAA0063931.13.4e-0660.34putative Clavata3/esr-related 43 [Cucumis melo var. makuwa][more]
BLAST of Clc08G05160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G05160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VDX31.6e-0660.34Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
BLAST of Clc08G05160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G05160.1Clc08G05160.1mRNA