Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTTTAGATGATCAAGACAGAGATTCAAAGTTATTTAAAGAAAAAAAGAAAAAATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTAAGACAAATTAGGATGAAAGTTGAAGGTTTTTAATTTTCCTTTACATTTTGGATTATTTATTTTTCTTGTAAGTGTGTAGTTATGTAGTTGGTGACACGTAGTTAGAACACGTTTAAATTTTGGTTGCATTGTTCTTTACTTGTGTATATCTTTTTGGGTTTAAATTTTGTTTGACTTTCATTTAATTTTCTTTGTCCTCTTTTTAAGTTTTTCAAACATATTGTAAGACATAATCATAATAACAATATTAACTAATAATTTAGAGATAAGGTTGAAAGTAGGATTGGCAAAAAAATCTATAGGTCGGGGAATCCTTGATTTAATTGGGGATGTTAGTCAAATCGGAGATCTTTTTAAGAACCTTGTTTGGGAATGGGGTGGGGACGGAGAGGGTATCCCTGCCCTGAGCCTGACCCGATTAAATAAAAAGTTAATAATATATATAAAAGATGTTGATTCTCGCTCTCGCATCCTTTCCTCACTCACTATCTCTCTCGCTTTCTCACACTCTTTCTCTCTCTCTTTCTCTCTCTTGCGTCGGAATGGGTCCTTGCGTGGACCCATTTCCCCAATGGGATAGGCAGGTCCCCCGCTCCGCCCCGGCCTGGCTCCGTTGCCAACCATAGTTAAAAGTTGGTATAAAACAAAATTACTTTTCCAAATTCAAATGAAGTTTTAGGTACCAACAAATTTCATCTCAATGTCAAAATCTTGACATGATATAGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA
mRNA sequence
CCAATTTTAGATGATCAAGACAGAGATTCAAAGTTATTTAAAGAAAAAAAGAAAAAATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA
Coding sequence (CDS)
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA
Protein sequence
MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGGGGVASNQNMGTLQTSIESS
Homology
BLAST of Clc08G03020 vs. NCBI nr
Match:
KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])
HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0
Query: 1 MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
MESSSSSL+K+N+DNAKA R R S N G G QINR SR +R S+TNR PPPK S+G
Sbjct: 1 MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
Query: 61 GG 62
GG
Sbjct: 61 GG 62
BLAST of Clc08G03020 vs. NCBI nr
Match:
XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])
HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0
Query: 1 MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
ME SSS+LQ SN+DNAKA RR N G QINRLS +RR G+ TNR PPPK S+GG
Sbjct: 1 MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60
Query: 61 G 62
G
Sbjct: 61 G 61
BLAST of Clc08G03020 vs. NCBI nr
Match:
KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])
HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0
Query: 1 MESSSSSLQK--SNSDNAKARRRRRSGNVGAGGQIN-RLSRSARRTGGSQTNRVPPPKMS 60
MESSSSSLQK +N NAKA R R + N G G IN R SR RRT GS+ NR PPPK S
Sbjct: 1 MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60
Query: 61 SGGGG 63
+GGGG
Sbjct: 61 TGGGG 65
BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match:
A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 0
Query: 1 MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
MESSSSSL+K+N+DNAKA R R S N G G QINR SR +R S+TNR PPPK S+G
Sbjct: 1 MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
Query: 61 GGG 63
GGG
Sbjct: 61 GGG 63
BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match:
A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 8.3e-06
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0
Query: 1 MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
ME SSS+LQ SN+DNAKA RR N G QINRLS +RR G+ TNR PPPK S+GG
Sbjct: 1 MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60
Query: 61 G 62
G
Sbjct: 61 G 61
BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match:
A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0
Query: 1 MESSSSSLQK--SNSDNAKARRRRRSGNVGAGGQIN-RLSRSARRTGGSQTNRVPPPKMS 60
MESSSSSLQK +N NAKA R R + N G G IN R SR RRT GS+ NR PPPK S
Sbjct: 1 MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60
Query: 61 SGGGG 63
+GGGG
Sbjct: 61 TGGGG 65
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8646590.1 | 1.7e-05 | 64.52 | hypothetical protein Csa_005634, partial [Cucumis sativus] | [more] |
| XP_022930152.1 | 1.7e-05 | 62.30 | proline-rich protein 36-like [Cucurbita moschata] | [more] |
| KAA0048493.1 | 1.9e-04 | 63.08 | hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KAN3 | 2.2e-06 | 65.08 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1 | [more] |
| A0A6J1EPK7 | 8.3e-06 | 62.30 | proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ... | [more] |
| A0A5D3DY74 | 9.2e-05 | 63.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
