Clc08G03020 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G03020
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionproline-rich protein 36-like
LocationClcChr08: 6615958 .. 6616981 (+)
RNA-Seq ExpressionClc08G03020
SyntenyClc08G03020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTTTAGATGATCAAGACAGAGATTCAAAGTTATTTAAAGAAAAAAAGAAAAAATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTAAGACAAATTAGGATGAAAGTTGAAGGTTTTTAATTTTCCTTTACATTTTGGATTATTTATTTTTCTTGTAAGTGTGTAGTTATGTAGTTGGTGACACGTAGTTAGAACACGTTTAAATTTTGGTTGCATTGTTCTTTACTTGTGTATATCTTTTTGGGTTTAAATTTTGTTTGACTTTCATTTAATTTTCTTTGTCCTCTTTTTAAGTTTTTCAAACATATTGTAAGACATAATCATAATAACAATATTAACTAATAATTTAGAGATAAGGTTGAAAGTAGGATTGGCAAAAAAATCTATAGGTCGGGGAATCCTTGATTTAATTGGGGATGTTAGTCAAATCGGAGATCTTTTTAAGAACCTTGTTTGGGAATGGGGTGGGGACGGAGAGGGTATCCCTGCCCTGAGCCTGACCCGATTAAATAAAAAGTTAATAATATATATAAAAGATGTTGATTCTCGCTCTCGCATCCTTTCCTCACTCACTATCTCTCTCGCTTTCTCACACTCTTTCTCTCTCTCTTTCTCTCTCTTGCGTCGGAATGGGTCCTTGCGTGGACCCATTTCCCCAATGGGATAGGCAGGTCCCCCGCTCCGCCCCGGCCTGGCTCCGTTGCCAACCATAGTTAAAAGTTGGTATAAAACAAAATTACTTTTCCAAATTCAAATGAAGTTTTAGGTACCAACAAATTTCATCTCAATGTCAAAATCTTGACATGATATAGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA

mRNA sequence

CCAATTTTAGATGATCAAGACAGAGATTCAAAGTTATTTAAAGAAAAAAAGAAAAAATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAGCGATAATGCCAAAGCTCGCCGTCGACGGCGGTCAGGGAATGTTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGGTCAGCTCGAAGGACCGGCGGCAGTCAAACCAACCGTGTCCCTCCGCCGAAGATGAGCTCTGGTGGCGGCGGTGTTGCCTCAAATCAAAATATGGGCACACTCCAAACATCTATCGAATCAAGTTGA

Protein sequence

MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGGGGVASNQNMGTLQTSIESS
Homology
BLAST of Clc08G03020 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
          MESSSSSL+K+N+DNAKA R R S N G G QINR  SR  +R   S+TNR PPPK S+G
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

BLAST of Clc08G03020 vs. NCBI nr
Match: XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
          ME SSS+LQ SN+DNAKA   RR  N   G QINRLS  +RR  G+ TNR PPPK S+GG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of Clc08G03020 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1  MESSSSSLQK--SNSDNAKARRRRRSGNVGAGGQIN-RLSRSARRTGGSQTNRVPPPKMS 60
          MESSSSSLQK  +N  NAKA R R + N G G  IN R SR  RRT GS+ NR PPPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 SGGGG 63
          +GGGG
Sbjct: 61 TGGGG 65

BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRL-SRSARRTGGSQTNRVPPPKMSSG 60
          MESSSSSL+K+N+DNAKA R R S N G G QINR  SR  +R   S+TNR PPPK S+G
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGG 63
          GGG
Sbjct: 61 GGG 63

BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match: A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.3e-06
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MESSSSSLQKSNSDNAKARRRRRSGNVGAGGQINRLSRSARRTGGSQTNRVPPPKMSSGG 60
          ME SSS+LQ SN+DNAKA   RR  N   G QINRLS  +RR  G+ TNR PPPK S+GG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of Clc08G03020 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05
Identity = 41/65 (63.08%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 1  MESSSSSLQK--SNSDNAKARRRRRSGNVGAGGQIN-RLSRSARRTGGSQTNRVPPPKMS 60
          MESSSSSLQK  +N  NAKA R R + N G G  IN R SR  RRT GS+ NR PPPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 SGGGG 63
          +GGGG
Sbjct: 61 TGGGG 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646590.11.7e-0564.52hypothetical protein Csa_005634, partial [Cucumis sativus][more]
XP_022930152.11.7e-0562.30proline-rich protein 36-like [Cucurbita moschata][more]
KAA0048493.11.9e-0463.08hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAN32.2e-0665.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1[more]
A0A6J1EPK78.3e-0662.30proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ... [more]
A0A5D3DY749.2e-0563.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G03020.2Clc08G03020.2mRNA