Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA
mRNA sequence
ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA
Coding sequence (CDS)
ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA
Protein sequence
MNSFVNLQIENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLTVRCCGLQLVYKQDVEMIDKMLMEAIQSS
Homology
BLAST of Clc08G00780 vs. NCBI nr
Match:
XP_022141874.1 (TMV resistance protein N-like isoform X1 [Momordica charantia])
HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENGLI+P HIHTITED IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661
BLAST of Clc08G00780 vs. NCBI nr
Match:
XP_022141875.1 (uncharacterized protein LOC111012131 isoform X2 [Momordica charantia])
HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENGLI+P HIHTITED IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451
BLAST of Clc08G00780 vs. NCBI nr
Match:
XP_038889439.1 (TMV resistance protein N-like [Benincasa hispida])
HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 71/86 (82.56%), Postives = 83/86 (96.51%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
IENGLI+PLH+H+ITEDR IW+HERQFVWLYYSP+NTYG++FRHRS +WAIIEADTPDL
Sbjct: 1584 IENGLIEPLHLHSITEDRFIWLHERQFVWLYYSPRNTYGEIFRHRSCIWAIIEADTPDLM 1643
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQ 95
VRCCGLQLVYKQD+E+IDK+LM+AIQ
Sbjct: 1644 VRCCGLQLVYKQDMEVIDKILMKAIQ 1669
BLAST of Clc08G00780 vs. NCBI nr
Match:
XP_038890618.1 (TMV resistance protein N-like [Benincasa hispida])
HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
IENGLI PLHIHTI ED +IW+HERQFVWLYYSP+ YG +FRHRSHVWAIIEAD+PDL
Sbjct: 1582 IENGLINPLHIHTIIEDTVIWLHERQFVWLYYSPRKKYGQIFRHRSHVWAIIEADSPDLM 1641
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
+CCGLQLVYKQ+V+MIDK+LMEAIQSS
Sbjct: 1642 AKCCGLQLVYKQNVQMIDKILMEAIQSS 1669
BLAST of Clc08G00780 vs. NCBI nr
Match:
XP_008463577.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])
HSP 1 Score: 160.6 bits (405), Expect = 6.7e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+ YG++FRHRSHVWAIIEADTPDL
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match:
A0A6J1CK08 (TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENGLI+P HIHTITED IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match:
A0A6J1CJB7 (uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENGLI+P HIHTITED IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match:
A0A1S3CJJ5 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+ YG++FRHRSHVWAIIEADTPDL
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match:
A0A6J1IBG2 (TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENG+I P+HIHTITEDR IW+HERQF+WLYYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1570 VENGVIHPIHIHTITEDRFIWLHERQFLWLYYSPRQTYGNIIRHRSHIWATIEADTPDMT 1629
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
VR CGLQLVY QDVE ID +LMEAI+S
Sbjct: 1630 VRGCGLQLVYNQDVERIDNILMEAIES 1656
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match:
A0A6J1EC12 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432680 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 0
Query: 9 IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
+ENG+I P+HIHT+TEDR IW+HERQF+W YYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1586 VENGVIHPIHIHTVTEDRFIWLHERQFLWFYYSPRQTYGNILRHRSHIWATIEADTPDMT 1645
Query: 69 VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
VR CGLQLVY QDVE IDK+LMEAI+S
Sbjct: 1646 VRGCGLQLVYNQDVERIDKILMEAIES 1672
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CK08 | 4.8e-40 | 86.36 | TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
| A0A6J1CJB7 | 4.8e-40 | 86.36 | uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
| A0A1S3CJJ5 | 3.2e-36 | 79.55 | TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1 | [more] |
| A0A6J1IBG2 | 1.8e-34 | 75.86 | TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 S... | [more] |
| A0A6J1EC12 | 1.8e-34 | 74.71 | TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
