Clc08G00780 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G00780
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTMV resistance protein N-like
LocationClcChr08: 1411615 .. 1411905 (-)
RNA-Seq ExpressionClc08G00780
SyntenyClc08G00780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

mRNA sequence

ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

Coding sequence (CDS)

ATGAACTCTTTTGTCAATTTGCAAATTGAGAATGGACTAATTCAACCATTACACATTCATACTATCACTGAGGACAGAATCATTTGGATGCATGAACGCCAGTTTGTTTGGCTCTATTACAGCCCAAAAAACACATATGGTGACGTTTTTCGCCACAGGTCTCATGTTTGGGCTATTATTGAAGCTGATACCCCAGACTTGACGGTAAGATGTTGTGGACTTCAATTAGTGTACAAGCAAGATGTGGAAATGATTGACAAGATGTTGATGGAAGCCATTCAGTCATCTTAA

Protein sequence

MNSFVNLQIENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLTVRCCGLQLVYKQDVEMIDKMLMEAIQSS
Homology
[Close]
BLAST of Clc08G00780 vs. NCBI nr
Match: XP_022141874.1 (TMV resistance protein N-like isoform X1 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661

[Close]
BLAST of Clc08G00780 vs. NCBI nr
Match: XP_022141875.1 (uncharacterized protein LOC111012131 isoform X2 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451

[Close]
BLAST of Clc08G00780 vs. NCBI nr
Match: XP_038889439.1 (TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 71/86 (82.56%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI+PLH+H+ITEDR IW+HERQFVWLYYSP+NTYG++FRHRS +WAIIEADTPDL 
Sbjct: 1584 IENGLIEPLHLHSITEDRFIWLHERQFVWLYYSPRNTYGEIFRHRSCIWAIIEADTPDLM 1643

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQ 95
            VRCCGLQLVYKQD+E+IDK+LM+AIQ
Sbjct: 1644 VRCCGLQLVYKQDMEVIDKILMKAIQ 1669

[Close]
BLAST of Clc08G00780 vs. NCBI nr
Match: XP_038890618.1 (TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIHTI ED +IW+HERQFVWLYYSP+  YG +FRHRSHVWAIIEAD+PDL 
Sbjct: 1582 IENGLINPLHIHTIIEDTVIWLHERQFVWLYYSPRKKYGQIFRHRSHVWAIIEADSPDLM 1641

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
             +CCGLQLVYKQ+V+MIDK+LMEAIQSS
Sbjct: 1642 AKCCGLQLVYKQNVQMIDKILMEAIQSS 1669

[Close]
BLAST of Clc08G00780 vs. NCBI nr
Match: XP_008463577.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 6.7e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+  YG++FRHRSHVWAIIEADTPDL 
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677

[Close]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1CK08 (TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1574 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1633

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1634 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1661

[Close]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1CJB7 (uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012131 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENGLI+P HIHTITED  IW+HERQFVWLYYSPKNTYG++FRH+SH+WAIIEADTPDLT
Sbjct: 1364 VENGLIEPFHIHTITEDTFIWLHERQFVWLYYSPKNTYGNIFRHKSHIWAIIEADTPDLT 1423

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            VRCCGLQLVY QDVE IDKMLMEAIQSS
Sbjct: 1424 VRCCGLQLVYNQDVEKIDKMLMEAIQSS 1451

[Close]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A1S3CJJ5 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            IENGLI PLHIH+I ED++IW+HERQFVWLYYSP+  YG++FRHRSHVWAIIEADTPDL 
Sbjct: 1590 IENGLINPLHIHSIIEDKVIWLHERQFVWLYYSPRKKYGEIFRHRSHVWAIIEADTPDLV 1649

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQSS 97
            V CCGLQ+VYK+DV +IDK+LMEAIQSS
Sbjct: 1650 VICCGLQVVYKKDVRVIDKILMEAIQSS 1677

[Close]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1IBG2 (TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENG+I P+HIHTITEDR IW+HERQF+WLYYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1570 VENGVIHPIHIHTITEDRFIWLHERQFLWLYYSPRQTYGNIIRHRSHIWATIEADTPDMT 1629

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
            VR CGLQLVY QDVE ID +LMEAI+S
Sbjct: 1630 VRGCGLQLVYNQDVERIDNILMEAIES 1656

[Close]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match: A0A6J1EC12 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432680 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 0 

Query: 9    IENGLIQPLHIHTITEDRIIWMHERQFVWLYYSPKNTYGDVFRHRSHVWAIIEADTPDLT 68
            +ENG+I P+HIHT+TEDR IW+HERQF+W YYSP+ TYG++ RHRSH+WA IEADTPD+T
Sbjct: 1586 VENGVIHPIHIHTVTEDRFIWLHERQFLWFYYSPRQTYGNILRHRSHIWATIEADTPDMT 1645

Query: 69   VRCCGLQLVYKQDVEMIDKMLMEAIQS 96
            VR CGLQLVY QDVE IDK+LMEAI+S
Sbjct: 1646 VRGCGLQLVYNQDVERIDKILMEAIES 1672

The following BLAST results are available for this feature:
BLAST of Clc08G00780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141874.19.9e-4086.36TMV resistance protein N-like isoform X1 [Momordica charantia][more]
XP_022141875.19.9e-4086.36uncharacterized protein LOC111012131 isoform X2 [Momordica charantia][more]
XP_038889439.16.0e-3782.56TMV resistance protein N-like [Benincasa hispida][more]
XP_038890618.13.0e-3680.68TMV resistance protein N-like [Benincasa hispida][more]
XP_008463577.16.7e-3679.55PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
BLAST of Clc08G00780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CK084.8e-4086.36TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1CJB74.8e-4086.36uncharacterized protein LOC111012131 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A1S3CJJ53.2e-3679.55TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103501686 PE=4 SV=1[more]
A0A6J1IBG21.8e-3475.86TMV resistance protein N-like OS=Cucurbita maxima OX=3661 GN=LOC111472024 PE=4 S... [more]
A0A6J1EC121.8e-3474.71TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of Clc08G00780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G00780.1Clc08G00780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0007165 signal transduction
molecular_function GO:0043531 ADP binding
molecular_function GO:0003953 NAD+ nucleosidase activity