Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGGTAAATTGGATGCTCGTGTTCTTTATTGTCTTTGAAGGATTAGAATTATTTTTAAACGATTCTTTAATTGAATATGTGAGGGGTAGATTCAAATTTCTAGAGATAATATGTGTTTTAATCAATTAAATTTTATTTTTTAAAGTTATTTTTTCTCCTTTTATGTTTAATTTTATCGAAGTGATTTGTATCAATTAAGCTTTTATTTTTATTTTTGAGGTAAATTGGATGCTCGTGTTCTTCGTTGTCTTTGAAGTCTACTGCACTTTATCACTGAAATTTTTCAATATTTATAAACAGCTTTGGCTCATTTTGCTATATTTGAAAAGAGTTATTATAATAATATTATCTTAATCATGATTTTAAATATTTTAAACTTAGATTATCAATGATATAAATGGTCGAACTAGCTTTATTGGTGAAGCTAAATACATGTAATTAGTCAAGGTCGAGCTTTAAAGCTTAAGTCACTCTTCACATGATTCATGGTTGATCCTATGGGTCGGTCTTCCTTATCTTTGATCTAACTACTATTCATCTCGTGGTGATCTTTTTCAATAATTTTTCAAGCAAACACGAAAAACAATAATAAAAAGTGAGAGATCTAGGAGACGAAAAAGTACACAAAAACAAATATTCATGAAACACAAAATTCAAACACTTAAATCTTTGATGAATAAGAACCCAACCCACAACAAAGCAGAACATAGTTCACTTCAAACAAGAAGGCCATGAAAAACCCCATTCCCTATGGACTTAGCGTTTCAATGGCAGTCTTTTTCATCACACAAAGAAGAGAAAAAGAAAAGAAAAAACAGAATTCATCAACTTTATTCAAAAGCTTTGTTGTTTGAGCCTTTTTCCATTCTTTTCAATTGCTCACTTGCAGTCGCACGAGTCGCACGAGCAGCTACTCCCACAGCTGCACCCACTCCTACATCGCACCATATTTAATTATTTAGTTTATTAAATATATTGATCAAATATCATTCTTTTTCATCTACACTTACGCTTCGTACTTTCAATGAATCTTTAAAATAGTGCATTGTTAATTCGTTGTTTACTTTTTGAGAAGAGAGAATACTGACATTGTTTCTCTATAGACTTTTGAAAACATATTCATTTTAATTTGTGTATTTTTTTACCTAAAAATTATTAATATCATTTAAACATAAAAAATTATTTTAAATAACAAAATTGTTGAAAATATTTACAAATAATAGCAAAATATCATAGTTTATTTGTGATAGACCGCGATAGATATGTCCTATCATGACACAAATAAACACAAATAGTAGTTTATCACAGTCTATCATAGATAGACATTGAAATTTTGCTATATAGTTCATTTTTCTATATTTGAAAACAGCCGTAAACATATTCGATAAAAAATTAATTTCAAACCAATTATAATGATTAACTTTAAAATTTATTGAAAATAAAAATTAAAAAAAAAAAACTAGGTTTGGACATTTGAATCATCTAATTAAAATATATGAAGATAATCATCAATATCTTAATTAGTTGAGCTATGTTCATATCTATTATTGACAAAGTAAATATAAATTATCCTTTAGTTGAAGTGTGTGTACATATCCATACGGTTAAAAAATTGTAGAGATTGGAGATCAAATATTGACCTTTGGGATGGTAAGTTCCTTTAAAAAAAAAAAAGTATTTCAACCAGTACGAGTATAAAAATTTGAACAAGTTCCAACCTCAAAATATATATATATGTCAATTATTGTTAATTTATGCTAATTTTATTTTTAAAAGGGTAGTTAATGAAGATATGTATGTATTAATTTATTATTGTAGGTTTTTTAAACCAAAGATTATGCATAGAATCATTACTTACATCATCAGGGAAGTCGCCTCTGTGATGGTCCTGCAAAGATTTAAAAAAAAAGGTAATTCTTAAATGACGACATGTCATTGTTATTGGTAAATTTAATAGTAAAAAGCAATATCCTACAATTAAAAGTAACCATCAACGTGAATTAAACATAGTTTAGGGAACAATGAAAATATTATCATCTTAAAAATGGACGTTTAGATGACTCAAAAACTTTTAAAAAATATAATAAAAATAAATAAATAAATAAATAAACGATACAATCAGGAGTTGAGTAGGGCTACAACATCACACTTTGAAAATACTTGGTGGATTATTTGAATTATTGAAATTTTTTTATGGATGGGAGATTGAACTTCCAACTTCTAAAATGGAAAATCGTGCTAATTATCATTGAGTTAAGCTTTTACTTTAACGGTTTGAATTATTGAGGTTGTTTGTTCAAATTCTTGCTAAAAAAAAATATTGATATCAAACTATATTATGAAAATTAGCTATGCTCAAAAAACAATTATAACTTTGAGAAAATAGGTGAACCCAGAAACAGAAATGATCTCAATGAATCCATAGATTTTCAATGTATTTGAAAGAAACTGATAAGATTTTGTGAATCATGGAATTAATAATTTTGAGATCCCTACAATGAACTATACATACAATAATATATAAAATGAAAATGAATAAGTTTTGTAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA
mRNA sequence
ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA
Coding sequence (CDS)
ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA
Protein sequence
MGNWLGKRKLVHPIEGYEGVKSSRPLRIKVVMTRNQLKELMAMVDLTLNDDLGSFILQKCCQEERKRERPRLAIAAVST
Homology
BLAST of Clc06G03110 vs. NCBI nr
Match:
KAG7013803.1 (hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGYEGVKS-SRPLRIKVVMTRNQLKELMAMVDLTLNDDLGSFILQK 60
MGNW+GKR+++HPIEG+EG++S SRPLRIKVVMTRNQLKELMAM DL+L DDL S ILQ+
Sbjct: 1 MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMADLSLCDDLASLILQE 60
Query: 61 CCQ 63
CC+
Sbjct: 61 CCR 63
BLAST of Clc06G03110 vs. NCBI nr
Match:
XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])
HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPI---EGYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDDLG 60
MGNW+GK + VHP+ EG GV S+ +RIK+ MT+ +LKELMA VD+T +++LG
Sbjct: 1 MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60
Query: 61 SFILQKCCQ 63
IL++C +
Sbjct: 61 GLILKECLE 69
BLAST of Clc06G03110 vs. NCBI nr
Match:
PQQ16064.1 (hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora])
HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIE------GYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LND 60
MGNW+G+ K VHP E G SS LRIKV MT +LKELMA VD+T N
Sbjct: 1 MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60
Query: 61 DLGSFILQKCCQEERKRERPRLAI 75
+LG IL++C E R R R A+
Sbjct: 61 ELGRLILRECL-EGRSRARVVAAV 83
BLAST of Clc06G03110 vs. NCBI nr
Match:
KAF3963623.1 (hypothetical protein CMV_012006 [Castanea mollissima])
HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGYEGVK-SSRPLRIKVVMTRNQLKELMAMVDLTL-NDDLGSFILQ 60
MGN G++K VHP++ +G++ S LRI+V M++ +LKE+M VDLT N DLG I+Q
Sbjct: 1 MGNSFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRELKEMMDQVDLTQGNSDLGGLIMQ 60
Query: 61 KCCQ 63
+C +
Sbjct: 61 ECLE 64
BLAST of Clc06G03110 vs. NCBI nr
Match:
GFY90175.1 (hypothetical protein Acr_07g0003720 [Actinidia rufa])
HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGYE--------GVKSSRPLRIKVVMTRNQLKELMAMVD---LTLN 60
MGNWLGK+++VHP+ G+E G +S+ +RIKV M+ +LKE MA VD L +
Sbjct: 1 MGNWLGKKQVVHPL-GHEPLRNGWSGGSRSNSSVRIKVRMSARELKEWMAQVDPSKLADS 60
Query: 61 DDLGSFILQKCCQEERKRERPRLAI 75
+ LG ILQ+C R R PR+ +
Sbjct: 61 EQLGGLILQEC---SRGRWVPRVVV 81
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match:
A0A7N2MCT3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGYEGVK-SSRPLRIKVVMTRNQLKELMAMVDLTL-NDDLGSFILQ 60
MGN+ G++K VHP++ +G++ S LRI+V M++ +LKE+MA VDLT N DLG I+Q
Sbjct: 1 MGNFFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRKLKEMMAQVDLTQGNSDLGGLIMQ 60
Query: 61 KCCQ 63
+C +
Sbjct: 61 ECLE 64
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match:
A0A314ZEY0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19127 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIE------GYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LND 60
MGNW+G+ K VHP E G SS LRIKV MT +LKELMA VD+T N
Sbjct: 1 MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60
Query: 61 DLGSFILQKCCQEERKRERPRLAI 75
+LG IL++C E R R R A+
Sbjct: 61 ELGRLILRECL-EGRSRARVVAAV 83
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match:
A0A7J0EUJ9 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_07g0003720 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGYE--------GVKSSRPLRIKVVMTRNQLKELMAMVD---LTLN 60
MGNWLGK+++VHP+ G+E G +S+ +RIKV M+ +LKE MA VD L +
Sbjct: 1 MGNWLGKKQVVHPL-GHEPLRNGWSGGSRSNSSVRIKVRMSARELKEWMAQVDPSKLADS 60
Query: 61 DDLGSFILQKCCQEERKRERPRLAI 75
+ LG ILQ+C R R PR+ +
Sbjct: 61 EQLGGLILQEC---SRGRWVPRVVV 81
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match:
M5X891 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGY-----EGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDD 60
MGNW+G+ K VHP E SS LRIKV MT Q KELMA VD T N +
Sbjct: 1 MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60
Query: 61 LGSFILQKCCQ 63
LG IL++C +
Sbjct: 61 LGRLILRECLE 71
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match:
A0A5E4FCA7 (PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0
Query: 1 MGNWLGKRKLVHPIEGY-----EGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDD 60
MGNW+G+ K VHP E SS LRIKV MT Q KELMA VD T N +
Sbjct: 1 MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60
Query: 61 LGSFILQKCCQ 63
LG IL++C +
Sbjct: 61 LGRLILRECLE 71
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7013803.1 | 1.4e-18 | 76.19 | hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_024197720.1 | 5.4e-07 | 47.83 | uncharacterized protein LOC112200945 [Rosa chinensis] | [more] |
PQQ16064.1 | 1.0e-05 | 47.62 | hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora] | [more] |
KAF3963623.1 | 3.8e-05 | 46.88 | hypothetical protein CMV_012006 [Castanea mollissima] | [more] |
GFY90175.1 | 5.0e-05 | 43.53 | hypothetical protein Acr_07g0003720 [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A7N2MCT3 | 1.7e-06 | 48.44 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A314ZEY0 | 4.9e-06 | 47.62 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_191... | [more] |
A0A7J0EUJ9 | 2.4e-05 | 43.53 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_07g0003720 PE=4 SV=1 | [more] |
M5X891 | 7.1e-05 | 47.89 | Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1 | [more] |
A0A5E4FCA7 | 7.1e-05 | 47.89 | PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |