Clc06G03110 (gene) Watermelon (cordophanus) v2

Overview
NameClc06G03110
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr06: 3257177 .. 3259961 (+)
RNA-Seq ExpressionClc06G03110
SyntenyClc06G03110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGGTAAATTGGATGCTCGTGTTCTTTATTGTCTTTGAAGGATTAGAATTATTTTTAAACGATTCTTTAATTGAATATGTGAGGGGTAGATTCAAATTTCTAGAGATAATATGTGTTTTAATCAATTAAATTTTATTTTTTAAAGTTATTTTTTCTCCTTTTATGTTTAATTTTATCGAAGTGATTTGTATCAATTAAGCTTTTATTTTTATTTTTGAGGTAAATTGGATGCTCGTGTTCTTCGTTGTCTTTGAAGTCTACTGCACTTTATCACTGAAATTTTTCAATATTTATAAACAGCTTTGGCTCATTTTGCTATATTTGAAAAGAGTTATTATAATAATATTATCTTAATCATGATTTTAAATATTTTAAACTTAGATTATCAATGATATAAATGGTCGAACTAGCTTTATTGGTGAAGCTAAATACATGTAATTAGTCAAGGTCGAGCTTTAAAGCTTAAGTCACTCTTCACATGATTCATGGTTGATCCTATGGGTCGGTCTTCCTTATCTTTGATCTAACTACTATTCATCTCGTGGTGATCTTTTTCAATAATTTTTCAAGCAAACACGAAAAACAATAATAAAAAGTGAGAGATCTAGGAGACGAAAAAGTACACAAAAACAAATATTCATGAAACACAAAATTCAAACACTTAAATCTTTGATGAATAAGAACCCAACCCACAACAAAGCAGAACATAGTTCACTTCAAACAAGAAGGCCATGAAAAACCCCATTCCCTATGGACTTAGCGTTTCAATGGCAGTCTTTTTCATCACACAAAGAAGAGAAAAAGAAAAGAAAAAACAGAATTCATCAACTTTATTCAAAAGCTTTGTTGTTTGAGCCTTTTTCCATTCTTTTCAATTGCTCACTTGCAGTCGCACGAGTCGCACGAGCAGCTACTCCCACAGCTGCACCCACTCCTACATCGCACCATATTTAATTATTTAGTTTATTAAATATATTGATCAAATATCATTCTTTTTCATCTACACTTACGCTTCGTACTTTCAATGAATCTTTAAAATAGTGCATTGTTAATTCGTTGTTTACTTTTTGAGAAGAGAGAATACTGACATTGTTTCTCTATAGACTTTTGAAAACATATTCATTTTAATTTGTGTATTTTTTTACCTAAAAATTATTAATATCATTTAAACATAAAAAATTATTTTAAATAACAAAATTGTTGAAAATATTTACAAATAATAGCAAAATATCATAGTTTATTTGTGATAGACCGCGATAGATATGTCCTATCATGACACAAATAAACACAAATAGTAGTTTATCACAGTCTATCATAGATAGACATTGAAATTTTGCTATATAGTTCATTTTTCTATATTTGAAAACAGCCGTAAACATATTCGATAAAAAATTAATTTCAAACCAATTATAATGATTAACTTTAAAATTTATTGAAAATAAAAATTAAAAAAAAAAAACTAGGTTTGGACATTTGAATCATCTAATTAAAATATATGAAGATAATCATCAATATCTTAATTAGTTGAGCTATGTTCATATCTATTATTGACAAAGTAAATATAAATTATCCTTTAGTTGAAGTGTGTGTACATATCCATACGGTTAAAAAATTGTAGAGATTGGAGATCAAATATTGACCTTTGGGATGGTAAGTTCCTTTAAAAAAAAAAAAGTATTTCAACCAGTACGAGTATAAAAATTTGAACAAGTTCCAACCTCAAAATATATATATATGTCAATTATTGTTAATTTATGCTAATTTTATTTTTAAAAGGGTAGTTAATGAAGATATGTATGTATTAATTTATTATTGTAGGTTTTTTAAACCAAAGATTATGCATAGAATCATTACTTACATCATCAGGGAAGTCGCCTCTGTGATGGTCCTGCAAAGATTTAAAAAAAAAGGTAATTCTTAAATGACGACATGTCATTGTTATTGGTAAATTTAATAGTAAAAAGCAATATCCTACAATTAAAAGTAACCATCAACGTGAATTAAACATAGTTTAGGGAACAATGAAAATATTATCATCTTAAAAATGGACGTTTAGATGACTCAAAAACTTTTAAAAAATATAATAAAAATAAATAAATAAATAAATAAACGATACAATCAGGAGTTGAGTAGGGCTACAACATCACACTTTGAAAATACTTGGTGGATTATTTGAATTATTGAAATTTTTTTATGGATGGGAGATTGAACTTCCAACTTCTAAAATGGAAAATCGTGCTAATTATCATTGAGTTAAGCTTTTACTTTAACGGTTTGAATTATTGAGGTTGTTTGTTCAAATTCTTGCTAAAAAAAAATATTGATATCAAACTATATTATGAAAATTAGCTATGCTCAAAAAACAATTATAACTTTGAGAAAATAGGTGAACCCAGAAACAGAAATGATCTCAATGAATCCATAGATTTTCAATGTATTTGAAAGAAACTGATAAGATTTTGTGAATCATGGAATTAATAATTTTGAGATCCCTACAATGAACTATACATACAATAATATATAAAATGAAAATGAATAAGTTTTGTAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA

mRNA sequence

ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA

Coding sequence (CDS)

ATGGGAAATTGGTTGGGAAAGAGAAAGCTGGTACATCCAATTGAGGGATATGAAGGAGTGAAAAGTTCGAGGCCTCTGAGGATCAAAGTAGTGATGACTCGAAACCAGCTGAAGGAGCTCATGGCCATGGTTGACCTCACATTAAATGATGATTTAGGCAGCTTCATCCTCCAAAAATGCTGCCAAGAAGAGAGAAAGAGAGAGAGACCCAGATTGGCAATTGCAGCTGTCTCCACATGA

Protein sequence

MGNWLGKRKLVHPIEGYEGVKSSRPLRIKVVMTRNQLKELMAMVDLTLNDDLGSFILQKCCQEERKRERPRLAIAAVST
Homology
[Close]
BLAST of Clc06G03110 vs. NCBI nr
Match: KAG7013803.1 (hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGYEGVKS-SRPLRIKVVMTRNQLKELMAMVDLTLNDDLGSFILQK 60
          MGNW+GKR+++HPIEG+EG++S SRPLRIKVVMTRNQLKELMAM DL+L DDL S ILQ+
Sbjct: 1  MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMADLSLCDDLASLILQE 60

Query: 61 CCQ 63
          CC+
Sbjct: 61 CCR 63

[Close]
BLAST of Clc06G03110 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPI---EGYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDDLG 60
          MGNW+GK + VHP+   EG  GV S+  +RIK+ MT+ +LKELMA VD+T     +++LG
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 61 SFILQKCCQ 63
            IL++C +
Sbjct: 61 GLILKECLE 69

[Close]
BLAST of Clc06G03110 vs. NCBI nr
Match: PQQ16064.1 (hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIE------GYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LND 60
          MGNW+G+ K VHP E      G     SS  LRIKV MT  +LKELMA VD+T     N 
Sbjct: 1  MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60

Query: 61 DLGSFILQKCCQEERKRERPRLAI 75
          +LG  IL++C  E R R R   A+
Sbjct: 61 ELGRLILRECL-EGRSRARVVAAV 83

[Close]
BLAST of Clc06G03110 vs. NCBI nr
Match: KAF3963623.1 (hypothetical protein CMV_012006 [Castanea mollissima])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGYEGVK-SSRPLRIKVVMTRNQLKELMAMVDLTL-NDDLGSFILQ 60
          MGN  G++K VHP++  +G++  S  LRI+V M++ +LKE+M  VDLT  N DLG  I+Q
Sbjct: 1  MGNSFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRELKEMMDQVDLTQGNSDLGGLIMQ 60

Query: 61 KCCQ 63
          +C +
Sbjct: 61 ECLE 64

[Close]
BLAST of Clc06G03110 vs. NCBI nr
Match: GFY90175.1 (hypothetical protein Acr_07g0003720 [Actinidia rufa])

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-05
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGYE--------GVKSSRPLRIKVVMTRNQLKELMAMVD---LTLN 60
          MGNWLGK+++VHP+ G+E        G +S+  +RIKV M+  +LKE MA VD   L  +
Sbjct: 1  MGNWLGKKQVVHPL-GHEPLRNGWSGGSRSNSSVRIKVRMSARELKEWMAQVDPSKLADS 60

Query: 61 DDLGSFILQKCCQEERKRERPRLAI 75
          + LG  ILQ+C    R R  PR+ +
Sbjct: 61 EQLGGLILQEC---SRGRWVPRVVV 81

[Close]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match: A0A7N2MCT3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGYEGVK-SSRPLRIKVVMTRNQLKELMAMVDLTL-NDDLGSFILQ 60
          MGN+ G++K VHP++  +G++  S  LRI+V M++ +LKE+MA VDLT  N DLG  I+Q
Sbjct: 1  MGNFFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRKLKEMMAQVDLTQGNSDLGGLIMQ 60

Query: 61 KCCQ 63
          +C +
Sbjct: 61 ECLE 64

[Close]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match: A0A314ZEY0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19127 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.9e-06
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIE------GYEGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LND 60
          MGNW+G+ K VHP E      G     SS  LRIKV MT  +LKELMA VD+T     N 
Sbjct: 1  MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60

Query: 61 DLGSFILQKCCQEERKRERPRLAI 75
          +LG  IL++C  E R R R   A+
Sbjct: 61 ELGRLILRECL-EGRSRARVVAAV 83

[Close]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match: A0A7J0EUJ9 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_07g0003720 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGYE--------GVKSSRPLRIKVVMTRNQLKELMAMVD---LTLN 60
          MGNWLGK+++VHP+ G+E        G +S+  +RIKV M+  +LKE MA VD   L  +
Sbjct: 1  MGNWLGKKQVVHPL-GHEPLRNGWSGGSRSNSSVRIKVRMSARELKEWMAQVDPSKLADS 60

Query: 61 DDLGSFILQKCCQEERKRERPRLAI 75
          + LG  ILQ+C    R R  PR+ +
Sbjct: 61 EQLGGLILQEC---SRGRWVPRVVV 81

[Close]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match: M5X891 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGY-----EGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDD 60
          MGNW+G+ K VHP E           SS  LRIKV MT  Q KELMA VD T     N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 61 LGSFILQKCCQ 63
          LG  IL++C +
Sbjct: 61 LGRLILRECLE 71

[Close]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match: A0A5E4FCA7 (PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 1  MGNWLGKRKLVHPIEGY-----EGVKSSRPLRIKVVMTRNQLKELMAMVDLT----LNDD 60
          MGNW+G+ K VHP E           SS  LRIKV MT  Q KELMA VD T     N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 61 LGSFILQKCCQ 63
          LG  IL++C +
Sbjct: 61 LGRLILRECLE 71

The following BLAST results are available for this feature:
BLAST of Clc06G03110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013803.11.4e-1876.19hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_024197720.15.4e-0747.83uncharacterized protein LOC112200945 [Rosa chinensis][more]
PQQ16064.11.0e-0547.62hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora][more]
KAF3963623.13.8e-0546.88hypothetical protein CMV_012006 [Castanea mollissima][more]
GFY90175.15.0e-0543.53hypothetical protein Acr_07g0003720 [Actinidia rufa][more]
BLAST of Clc06G03110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7N2MCT31.7e-0648.44Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A314ZEY04.9e-0647.62Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_191... [more]
A0A7J0EUJ92.4e-0543.53Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_07g0003720 PE=4 SV=1[more]
M5X8917.1e-0547.89Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1[more]
A0A5E4FCA77.1e-0547.89PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV... [more]
BLAST of Clc06G03110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc06G03110.2Clc06G03110.2mRNA