Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATCTTGACGTTACTGATTCAGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACGCAAAGAAGAAGCCCAAAGGTTCCATGAACCGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAGAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCCCTTGGATTGGCTAAATTGGCGACTTCATTTTTGGATTCCTCCATGGATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGACGAAGATTATAAGCCTGGCAATGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAGGAGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGTTCTCGTGGAATGAAGGTATCACTCTCCATTTTCTGTTATATGTACTGTACTTTTTACCATTGTACAGATGAATTATATAAATTTGTGGTAGCTGTTCTATTCATGATTTTGCGATGTTCCTTAGCTTGATTAACTGATAATTTACTGTTGGGATCCTTAACTAATAATTGCGTACATGATCTTCATTAAGTAGAATATTTAACATTTTTCCTGTAATATCCATCAAAGATGGAGATCAATGCTGAGAGTACATACACAATTTTTAAAAGAAGACAGTATTTATTGGCATGGTGAAAAGATGAACCCAATCGACAAACATCCCTAAAAGGAGCTTAGGAATTACTTTCTTTGGTCGGTATTTGGAAGGGATTTAAGGAGAAGTAACAGCTCACATTCTCTCCTTGAGAAGGAAAATCATCTATCAAGTAAAAGCAATGATGACTAGCCCTTTTTGTTTTCTTGTGATGGAACCAAGATTCTGTGTTTACCTCATTTGCATCCAACTTGGTGATTTTTGGCCAAGTATTGCCTCTTGTTTGGAAGATTTTAAATCCATATTAGCTAGTAGTAGTCAACCAACCACTAACCACTAACCAGTACATGGTTCCCCAATGGAGGGTGAAGGAAAAATCATATTATCTTGTCCATATTTCATAAGTCTTAACTTTCTCTATATTTTCCATAACCTCAATGGAGTAAGATTTTGATAGGCACCTAAATTACGAAAGTGTATATGTGAAAGCGTGGAAAAGGAGGTGTAGGTTCGTGAGAAATTAGTGTGGAACCCAGAGAATGTTGTTGGTTAGAATTGGGTTGTGGGTAGCAGGGCATATAGGATGTCTTGTTGCTTGAGGAGATTATCTTTACTGCCAAAATATTGTATTTGGTTCTCTGAGGAGAAATCGGGAGTGAAAGGGAAGCTCTCAAATCTTCCCTAGTTTATGTTGGATAAATGAAGTTGTTGGCTGAGGCCTAACATTTTGGTATTAAAGCACCATTTCAAGGAATGGTGGGTAGAAGGATGGAGAATAGGGTTGTGGAGTTGGAGGAGAAGTTGACTTTGTTTGGGAAAAGGTCGATAGAGCTGGAAACGAAGCTGGACTCTCAGTTTGTAAAGCTGAATGTGGTTGGGGGGCTTAATACATCAACTTTTTGGGACCAAGTTTGTGGTGTTGTGGGTTCAAATGCTAGATATCAGGCAAGGCAAAGTAGTCAACCAACCCCCAAAGGGTACTCATTGGTGAGTTGCTATGTTACCAAGGCAGAATAATCCTCCCAACTTTTTCGTCTGCTATTACACTTCTCTTGAGTGAATTTCATAATAGTTGACGTGGGTGGTCAAGGCCTTGCCAAAATTGATAAATGA
mRNA sequence
ATGTCGAATCTTGACGTTACTGATTCAGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACGCAAAGAAGAAGCCCAAAGGTTCCATGAACCGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAGAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCCCTTGGATTGGCTAAATTGGCGACTTCATTTTTGGATTCCTCCATGGATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGACGAAGATTATAAGCCTGGCAATGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAGGAGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGTTCTCGTGGAATGAAGGTATCACTCTCCATTTTCTGTTATATGTACTTTGACGTGGGTGGTCAAGGCCTTGCCAAAATTGATAAATGA
Coding sequence (CDS)
ATGTCGAATCTTGACGTTACTGATTCAGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACGCAAAGAAGAAGCCCAAAGGTTCCATGAACCGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAGAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCCCTTGGATTGGCTAAATTGGCGACTTCATTTTTGGATTCCTCCATGGATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGACGAAGATTATAAGCCTGGCAATGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAGGAGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGTTCTCGTGGAATGAAGGTATCACTCTCCATTTTCTGTTATATGTACTTTGACGTGGGTGGTCAAGGCCTTGCCAAAATTGATAAATGA
Protein sequence
MSNLDVTDSEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSEDDDSEEEDEDFGSGKVSGSRGMKVSLSIFCYMYFDVGGQGLAKIDK
Homology
BLAST of Clc06G03090 vs. NCBI nr
Match:
XP_004140495.1 (uncharacterized protein LOC101206207 [Cucumis sativus] >KGN46547.1 hypothetical protein Csa_005249 [Cucumis sativus])
HSP 1 Score: 184.1 bits (466), Expect = 8.8e-43
Identity = 108/129 (83.72%), Postives = 116/129 (89.92%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+T +KKK +GSMN RN KDVPEYEKQR+SRIAENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTHSKKKLRGSMNGRNVKDVPEYEKQRISRIAENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GLAK+ATSFLDSS +LRK D KGKRKLGEAAD+DYKPGNDSSSSED DDSEE DEDFGSG
Sbjct: 61 GLAKMATSFLDSSKNLRKTDIKGKRKLGEAADDDYKPGNDSSSSEDEDDSEEGDEDFGSG 120
Query: 121 KVSGSRGMK 128
KVSGSRG K
Sbjct: 121 KVSGSRGTK 129
BLAST of Clc06G03090 vs. NCBI nr
Match:
XP_016902477.1 (PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo])
HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+TD+K+K + SMN R+ KDVPEYEKQR+SRI ENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTDSKRKLRSSMNCRSVKDVPEYEKQRISRITENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GL KLATSFLDSS +LRK DRKGKRKLGEAADEDY+PG DSSSSED DDSEEEDE+FGSG
Sbjct: 61 GLGKLATSFLDSSKNLRKTDRKGKRKLGEAADEDYEPGQDSSSSEDEDDSEEEDEEFGSG 120
Query: 121 KVSGSRGMK 128
K SGSRG K
Sbjct: 121 KASGSRGTK 129
BLAST of Clc06G03090 vs. NCBI nr
Match:
KAA0039753.1 (EF_hand_5 domain-containing protein [Cucumis melo var. makuwa] >TYK24744.1 EF_hand_5 domain-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+TD+K+K + SMN R+ KDVPEYEKQR+SRI ENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTDSKRKLRSSMNCRSVKDVPEYEKQRISRITENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GL KLATSFLDSS +LRK DRKGKRKLGEAADEDY+PG DSSSSED DDSEEEDE+FGSG
Sbjct: 61 GLGKLATSFLDSSKNLRKTDRKGKRKLGEAADEDYEPGQDSSSSEDEDDSEEEDEEFGSG 120
Query: 121 KVSGSRGMK 128
K SGSRG K
Sbjct: 121 KASGSRGTK 129
BLAST of Clc06G03090 vs. NCBI nr
Match:
XP_023547371.1 (caltractin-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 158.3 bits (399), Expect = 5.2e-35
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 6 VTDSEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLA 65
++DSER+E PNSSSTD KK P+GS++ + KD PEYEKQRLSRIAEN+KRMEALGLAKLA
Sbjct: 10 MSDSERKEAPNSSSTDTKKTPRGSISGGDVKDTPEYEKQRLSRIAENRKRMEALGLAKLA 69
Query: 66 TSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSEDDDSEEEDEDFGSGKVSGSRG 125
TSF+DSS LRKIDRKGKRK DEDY P DSS+SEDDDSEE DE FGSGKVS SRG
Sbjct: 70 TSFMDSSKTLRKIDRKGKRKF----DEDYNPAEDSSNSEDDDSEEGDEGFGSGKVSRSRG 127
Query: 126 MK 128
MK
Sbjct: 130 MK 127
BLAST of Clc06G03090 vs. NCBI nr
Match:
XP_023547370.1 (uncharacterized protein LOC111806339 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 158.3 bits (399), Expect = 5.2e-35
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 6 VTDSEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLA 65
++DSER+E PNSSSTD KK P+GS++ + KD PEYEKQRLSRIAEN+KRMEALGLAKLA
Sbjct: 10 MSDSERKEAPNSSSTDTKKTPRGSISGGDVKDTPEYEKQRLSRIAENRKRMEALGLAKLA 69
Query: 66 TSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSEDDDSEEEDEDFGSGKVSGSRG 125
TSF+DSS LRKIDRKGKRK DEDY P DSS+SEDDDSEE DE FGSGKVS SRG
Sbjct: 70 TSFMDSSKTLRKIDRKGKRKF----DEDYNPAEDSSNSEDDDSEEGDEGFGSGKVSRSRG 127
Query: 126 MK 128
MK
Sbjct: 130 MK 127
BLAST of Clc06G03090 vs. ExPASy TrEMBL
Match:
A0A0A0KDV1 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G108450 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 4.3e-43
Identity = 108/129 (83.72%), Postives = 116/129 (89.92%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+T +KKK +GSMN RN KDVPEYEKQR+SRIAENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTHSKKKLRGSMNGRNVKDVPEYEKQRISRIAENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GLAK+ATSFLDSS +LRK D KGKRKLGEAAD+DYKPGNDSSSSED DDSEE DEDFGSG
Sbjct: 61 GLAKMATSFLDSSKNLRKTDIKGKRKLGEAADDDYKPGNDSSSSEDEDDSEEGDEDFGSG 120
Query: 121 KVSGSRGMK 128
KVSGSRG K
Sbjct: 121 KVSGSRGTK 129
BLAST of Clc06G03090 vs. ExPASy TrEMBL
Match:
A0A5D3DMC4 (EF_hand_5 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003070 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+TD+K+K + SMN R+ KDVPEYEKQR+SRI ENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTDSKRKLRSSMNCRSVKDVPEYEKQRISRITENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GL KLATSFLDSS +LRK DRKGKRKLGEAADEDY+PG DSSSSED DDSEEEDE+FGSG
Sbjct: 61 GLGKLATSFLDSSKNLRKTDRKGKRKLGEAADEDYEPGQDSSSSEDEDDSEEEDEEFGSG 120
Query: 121 KVSGSRGMK 128
K SGSRG K
Sbjct: 121 KASGSRGTK 129
BLAST of Clc06G03090 vs. ExPASy TrEMBL
Match:
A0A1S4E2M5 (uncharacterized protein LOC103499070 OS=Cucumis melo OX=3656 GN=LOC103499070 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 0
Query: 1 MSNLDVTDSER-EETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEAL 60
MSN D+TDSE EETPNSS+TD+K+K + SMN R+ KDVPEYEKQR+SRI ENKKRMEAL
Sbjct: 1 MSNRDLTDSEHDEETPNSSTTDSKRKLRSSMNCRSVKDVPEYEKQRISRITENKKRMEAL 60
Query: 61 GLAKLATSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSED-DDSEEEDEDFGSG 120
GL KLATSFLDSS +LRK DRKGKRKLGEAADEDY+PG DSSSSED DDSEEEDE+FGSG
Sbjct: 61 GLGKLATSFLDSSKNLRKTDRKGKRKLGEAADEDYEPGQDSSSSEDEDDSEEEDEEFGSG 120
Query: 121 KVSGSRGMK 128
K SGSRG K
Sbjct: 121 KASGSRGTK 129
BLAST of Clc06G03090 vs. ExPASy TrEMBL
Match:
A0A6J1H502 (caltractin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460448 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 3.3e-35
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 6 VTDSEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLA 65
++DSER+E PNSSSTD KK P+GS++ + KD PEYEKQRLSRIAEN+KRMEALGLAKLA
Sbjct: 10 MSDSERKEAPNSSSTDTKKTPRGSISGGDVKDTPEYEKQRLSRIAENRKRMEALGLAKLA 69
Query: 66 TSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSEDDDSEEEDEDFGSGKVSGSRG 125
TSF+DSS LRKIDRKGKRK DEDY PG SS+SEDDDSEE DE FGSGKVS SRG
Sbjct: 70 TSFMDSSKTLRKIDRKGKRKF----DEDYNPGEGSSNSEDDDSEEGDEGFGSGKVSRSRG 127
Query: 126 MK 128
MK
Sbjct: 130 MK 127
BLAST of Clc06G03090 vs. ExPASy TrEMBL
Match:
A0A6J1H6F0 (uncharacterized protein LOC111460448 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460448 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 3.3e-35
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 6 VTDSEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLA 65
++DSER+E PNSSSTD KK P+GS++ + KD PEYEKQRLSRIAEN+KRMEALGLAKLA
Sbjct: 10 MSDSERKEAPNSSSTDTKKTPRGSISGGDVKDTPEYEKQRLSRIAENRKRMEALGLAKLA 69
Query: 66 TSFLDSSMDLRKIDRKGKRKLGEAADEDYKPGNDSSSSEDDDSEEEDEDFGSGKVSGSRG 125
TSF+DSS LRKIDRKGKRK DEDY PG SS+SEDDDSEE DE FGSGKVS SRG
Sbjct: 70 TSFMDSSKTLRKIDRKGKRKF----DEDYNPGEGSSNSEDDDSEEGDEGFGSGKVSRSRG 127
Query: 126 MK 128
MK
Sbjct: 130 MK 127
BLAST of Clc06G03090 vs. TAIR 10
Match:
AT1G73440.1 (calmodulin-related )
HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 0
Query: 9 SEREETPNSSSTDAKKKPKGSMNRRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLATSF 68
SERE + +SSS + + KG++++ YEKQRLSRIAENK R++ALG++K A +
Sbjct: 13 SERESS-SSSSGNESEPTKGTISK--------YEKQRLSRIAENKARLDALGISKAAKAL 72
Query: 69 LDSSMDLRKIDRKGKRKLGEAADEDYKPG-NDSSSSEDDDSEE---EDEDFGSGKVSGSR 128
L S +K R+ KR GE D+DY P D EDDD E EDE+F + + S
Sbjct: 73 LSPSPVSKK--RRVKRNSGE-EDDDYTPVIADGDGDEDDDEVEEIDEDEEFLCKRKNKSS 127
Query: 129 GMKVSLS 132
K +S
Sbjct: 133 ASKRKVS 127
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004140495.1 | 8.8e-43 | 83.72 | uncharacterized protein LOC101206207 [Cucumis sativus] >KGN46547.1 hypothetical ... | [more] |
XP_016902477.1 | 3.7e-41 | 80.62 | PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo] | [more] |
KAA0039753.1 | 3.7e-41 | 80.62 | EF_hand_5 domain-containing protein [Cucumis melo var. makuwa] >TYK24744.1 EF_ha... | [more] |
XP_023547371.1 | 5.2e-35 | 75.41 | caltractin-like isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
XP_023547370.1 | 5.2e-35 | 75.41 | uncharacterized protein LOC111806339 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KDV1 | 4.3e-43 | 83.72 | EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G108450 PE=... | [more] |
A0A5D3DMC4 | 1.8e-41 | 80.62 | EF_hand_5 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A1S4E2M5 | 1.8e-41 | 80.62 | uncharacterized protein LOC103499070 OS=Cucumis melo OX=3656 GN=LOC103499070 PE=... | [more] |
A0A6J1H502 | 3.3e-35 | 75.41 | caltractin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460448 PE=4 SV... | [more] |
A0A6J1H6F0 | 3.3e-35 | 75.41 | uncharacterized protein LOC111460448 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
AT1G73440.1 | 1.1e-06 | 41.73 | calmodulin-related | [more] |