Clc05G28900 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G28900
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding protein 1-like
LocationClcChr05: 35848651 .. 35849907 (-)
RNA-Seq ExpressionClc05G28900
SyntenyClc05G28900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCATTAGCCCAACCCAAAAAAGGCACTTATTATCTGCTTAAATACCGATTATTTGACCTATGTATCCAGCGTTGGACATGGCAACTGTCTACCTTGTGTTTTTGCTGAAAATCTCCTGATCTCTGTAATGTCGAAGCTGTAAAAAGTAAGTTCTACAATCTACCTTCTATACTTCTCTTTAATTTCTTCTGGTCGTTTCAACCATTGTAATCGTTTTGTCCAATCCCCTCCCCAGGGTTTTGCCTGCATTTCCATTTAGGGTTTTAGGGCTAATTCTCTATTGGATGAATTTCACTTTTAGCCGCTCTTATACCCATTTTTTTGGTTCTTTATTGGTGATGGAAGGTAATTATAGAAACCCCAGTTGATAAAGTGTTGGCTTTTACTGGAAACTAATTTTTAGAATATTGCTCTTTTATTTTTCTTTTATGATTGATTTGTAATGTTTTCGTCCAGAATTGTAGGTTAAAGTGACTTACTCTACTGGTTAAAACCTGTGGAGCAAGCAACGGAACAAAGAATGAATATGAGTACTATTAGGATGGAAAATAACAATGATCAGTGTAGGGGCAGAAAGATTTTTGTTGGGGGCTTATCAGCTGAATTGACTGAGGATGAGTTTAAAACTTACTTTGAAAAGTTCGGTCAGATAACCGATGTAGTTGTGATGCATGATAGTGTAACCAACCGCCCTAGAGGATTTGGATTCATCACATTTGATTCTGTAGAATCTGTTGACTCTGTTCTGCAGAATAACTTTCATGAGCTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGAAACTACAATGCTGGTCATATTCCCAATGCTAGAACACTGGGAGGAAAAAGCCCTCTTCCTAACAGGGATGTTCCTTTCCCTTACCCATATTATGGTACTGGTTATACAATTTATCCTGGTTTTACACCTTTTCCGCATTTTGGAGGACCAGGAGTTGATTTGTATGGTTCAAACTTCTATGGGAATTGGTTTCCCCCTAGCTTTGGTAACATGGCTTCCGACGGCGCATGGTGCAGTCCAAATTTTTTTGGTGTTGGGATGTTTCCTCCACCTTACAGAAATTTTCTAATTTCTCCATCATTCTCAAGCAAGGGGCTCTCAGATACAGGGACTGGAAATGGAATGGCAATAAGAAACGGGGAGATAAAGCAGAAAACTTCTGGAAAGCGAAGTATGTCAGCGGATGCAGTGCCATTTCAGATCAAAGACAAAACTTGA

mRNA sequence

ATGGCAACGGAACAAAGAATGAATATGAGTACTATTAGGATGGAAAATAACAATGATCAGTGTAGGGGCAGAAAGATTTTTGTTGGGGGCTTATCAGCTGAATTGACTGAGGATGAGTTTAAAACTTACTTTGAAAAGTTCGGTCAGATAACCGATGTAGTTGTGATGCATGATAGTGTAACCAACCGCCCTAGAGGATTTGGATTCATCACATTTGATTCTGTAGAATCTGTTGACTCTGTTCTGCAGAATAACTTTCATGAGCTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGAAACTACAATGCTGGTCATATTCCCAATGCTAGAACACTGGGAGGAAAAAGCCCTCTTCCTAACAGGGATGTTCCTTTCCCTTACCCATATTATGGTACTGGTTATACAATTTATCCTGGTTTTACACCTTTTCCGCATTTTGGAGGACCAGGAGTTGATTTGTATGGTTCAAACTTCTATGGGAATTGGTTTCCCCCTAGCTTTGGTAACATGGCTTCCGACGGCGCATGGTGCAGTCCAAATTTTTTTGGTGTTGGGATGTTTCCTCCACCTTACAGAAATTTTCTAATTTCTCCATCATTCTCAAGCAAGGGGCTCTCAGATACAGGGACTGGAAATGGAATGGCAATAAGAAACGGGGAGATAAAGCAGAAAACTTCTGGAAAGCGAAGTATGTCAGCGGATGCAGTGCCATTTCAGATCAAAGACAAAACTTGA

Coding sequence (CDS)

ATGGCAACGGAACAAAGAATGAATATGAGTACTATTAGGATGGAAAATAACAATGATCAGTGTAGGGGCAGAAAGATTTTTGTTGGGGGCTTATCAGCTGAATTGACTGAGGATGAGTTTAAAACTTACTTTGAAAAGTTCGGTCAGATAACCGATGTAGTTGTGATGCATGATAGTGTAACCAACCGCCCTAGAGGATTTGGATTCATCACATTTGATTCTGTAGAATCTGTTGACTCTGTTCTGCAGAATAACTTTCATGAGCTGAATGGTAGGCGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGAAACTACAATGCTGGTCATATTCCCAATGCTAGAACACTGGGAGGAAAAAGCCCTCTTCCTAACAGGGATGTTCCTTTCCCTTACCCATATTATGGTACTGGTTATACAATTTATCCTGGTTTTACACCTTTTCCGCATTTTGGAGGACCAGGAGTTGATTTGTATGGTTCAAACTTCTATGGGAATTGGTTTCCCCCTAGCTTTGGTAACATGGCTTCCGACGGCGCATGGTGCAGTCCAAATTTTTTTGGTGTTGGGATGTTTCCTCCACCTTACAGAAATTTTCTAATTTCTCCATCATTCTCAAGCAAGGGGCTCTCAGATACAGGGACTGGAAATGGAATGGCAATAAGAAACGGGGAGATAAAGCAGAAAACTTCTGGAAAGCGAAGTATGTCAGCGGATGCAGTGCCATTTCAGATCAAAGACAAAACTTGA

Protein sequence

MATEQRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDKT
Homology
BLAST of Clc05G28900 vs. NCBI nr
Match: XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 438.3 bits (1126), Expect = 4.3e-119
Identity = 212/247 (85.83%), Postives = 225/247 (91.09%), Query Frame = 0

Query: 7   MNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRG 66
           M MST RMENNNDQCRGRKIFVGGLSAELTEDEFK YFEKFG+ITDVVVMHDSVTNRPRG
Sbjct: 1   MIMSTTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60

Query: 67  FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLP-- 126
           FGFITF+SVESVDSVLQ+NFHELNGRRVEVKRAIPKKGNYN GHIPNART GGKSPLP  
Sbjct: 61  FGFITFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNS 120

Query: 127 NRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSP 186
           NR+VPFPYPYYG+ Y +YPGFTPFPH+GGPGVDLYGS+ YGNWFPPSFGNMAS+G W  P
Sbjct: 121 NRNVPFPYPYYGSSYPVYPGFTPFPHYGGPGVDLYGSHLYGNWFPPSFGNMASEGTWYGP 180

Query: 187 NFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGM--AIRNGEIKQKTSGKRSMSADAVP 246
           NFFGVG+FPPPYRN LI P +SSKGLSDTGTGNGM    RNGEIKQ T+GKR MSADAVP
Sbjct: 181 NFFGVGIFPPPYRNSLIPPIYSSKGLSDTGTGNGMVDTRRNGEIKQNTTGKRIMSADAVP 240

Query: 247 FQIKDKT 250
           FQIKD+T
Sbjct: 241 FQIKDRT 247

BLAST of Clc05G28900 vs. NCBI nr
Match: KAE8649895.1 (hypothetical protein Csa_012205 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 7.9e-97
Identity = 188/247 (76.11%), Postives = 205/247 (83.00%), Query Frame = 0

Query: 6   RMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPR 65
           R+NMST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPR
Sbjct: 50  RLNMSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPR 109

Query: 66  GFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL-- 125
           GFGF+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN  HIPNAR    KSPL  
Sbjct: 110 GFGFVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLN 169

Query: 126 PNRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCS 185
            NR+VPFPYPYYG+GY IYPGFT FPH+G   VD YGSNFYGNWFPP   N+ASDG W  
Sbjct: 170 GNRNVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHG 229

Query: 186 PNFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVP 245
           PNFF VGM PP  RN L+ P   SKG+   G+ NGMA  RNGEIKQ T+GKR MSADA P
Sbjct: 230 PNFFSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAP 289

Query: 246 FQIKDKT 250
           FQIKD+T
Sbjct: 290 FQIKDRT 289

BLAST of Clc05G28900 vs. NCBI nr
Match: XP_004141412.1 (RNA-binding protein 1 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95
Identity = 186/244 (76.23%), Postives = 202/244 (82.79%), Query Frame = 0

Query: 9   MSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFG 68
           MST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPRGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 69  FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL--PNR 128
           F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN  HIPNAR    KSPL   NR
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120

Query: 129 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNF 188
           +VPFPYPYYG+GY IYPGFT FPH+G   VD YGSNFYGNWFPP   N+ASDG W  PNF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180

Query: 189 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVPFQI 248
           F VGM PP  RN L+ P   SKG+   G+ NGMA  RNGEIKQ T+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237

Query: 249 KDKT 250
           KD+T
Sbjct: 241 KDRT 237

BLAST of Clc05G28900 vs. NCBI nr
Match: KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.5 bits (794), Expect = 1.4e-80
Identity = 165/248 (66.53%), Postives = 188/248 (75.81%), Query Frame = 0

Query: 1   MATEQRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSV 60
           +A EQRM+  T RME   DQ RGRKIFVGGLSAELTED+FK+YFEKFG++TDVVVM DSV
Sbjct: 14  LAREQRMSNGT-RME---DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSV 73

Query: 61  TNRPRGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGK 120
           T RPRGFGFITFDSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI        K
Sbjct: 74  TKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SK 133

Query: 121 SPLPNRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGA 180
           SPL   +V   YPYY  GYT+YPGFTPFP + GPG  LYGS+ YGNWF PSFG MAS  A
Sbjct: 134 SPLSESNVLPSYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAA 193

Query: 181 WCSPNFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADA 240
           W +PNFF  GMFPPP+++ L+ P++SS GLS    G   A    ++   T  +++MSADA
Sbjct: 194 WYAPNFF--GMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADA 247

Query: 241 VPFQIKDK 249
           VPF  KDK
Sbjct: 254 VPFHAKDK 247

BLAST of Clc05G28900 vs. NCBI nr
Match: XP_022940975.1 (RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 0

Query: 19  DQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESV 78
           DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 79  DSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGTG 138
           DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI        KSPL   +V   YPYY  G
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128

Query: 139 YTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYRN 198
           YT+YPGFTPFP + GPG  LYGS+ YGNWF PSFG MAS  AW +PNFF  GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188

Query: 199 FLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
            L+ P++SS GLS    G   A    ++   T  +++MSADAVPF  KDK
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228

BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-32
Identity = 90/206 (43.69%), Postives = 121/206 (58.74%), Query Frame = 0

Query: 5   QRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRP 64
           Q+MN     M +N    R +KIFVGGLS+  TE+EFK+YFE+FG+ TDVVVMHD VTNRP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160

Query: 65  RGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNAGHIPNARTLGGK 124
           RGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G    N NA +IP + +    
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220

Query: 125 SP-LPNRD-----VPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 184
           +P +P ++     + FP P +G  + +     P           YG  F       S+ N
Sbjct: 221 TPYVPEQNGYGMVLQFPPPVFGYHHNVQAVQYP-----------YGYQFTAQVANVSWNN 280

Query: 185 --MASDGAWCSPNFFGVGMFPPPYRN 199
             M   G +C+P        PPP  N
Sbjct: 281 PIMQPTGFYCAPPH----PTPPPTNN 291

BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 0

Query: 8   NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
           N++T R    +   + +KIFVGGL   LT++EF+ YFE +G +TDV +M+D  TNRPRGF
Sbjct: 94  NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153

Query: 68  GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRD 127
           GF++FDS ++VDSVL   FH+L+G++VEVKRA+PK  N   G     R++GG        
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG----GRSMGGGG------ 213

Query: 128 VPFPYPYYGTGYTIYPGFTPFPHF-----GGPGVDLYGSNFYGNWFPPSFGNMASDGA 181
               Y  YG   + Y G      F      G G+  YGS+ YG      +GN  S+GA
Sbjct: 214 -SGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYG----AGYGN-GSNGA 255

BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-20
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0

Query: 22  RGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESVDSV 81
           R +KIFVGGLSA  T ++ K+YFE+FG I D ++M D  TNR RGFGF+TF S + VD V
Sbjct: 116 RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175

Query: 82  LQNNFHELNGRRVEVKRAIPKK--------GNYNAGHIPNARTLGGKSPLPNRDVPFPYP 141
            + +FHE+N + VE K+A PK+            AG       + G   LP       Y 
Sbjct: 176 CEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYA 235

Query: 142 YY--GTGYTIYPGF-TPFP 150
            Y  G GY+ YP F  P+P
Sbjct: 236 AYAAGRGYSGYPSFGLPYP 254

BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-20
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 0

Query: 18  NDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVES 77
           +D  +  KIFVGG+     E E + YF+KFG +T+VV+++D+   RPRGFGFITF+  +S
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166

Query: 78  VDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGT 137
           VD  +  +FH++ G++VEVKRA P+     A   P A   G +            P    
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVA----------PSAAN 226

Query: 138 GYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYR 197
           G+   P  T    +G  G+ +      G + PP  G              G    PPP+ 
Sbjct: 227 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR-------------GAPPPPPPFT 268

Query: 198 NFLIS 203
           ++++S
Sbjct: 287 SYIVS 268

BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 0

Query: 18  NDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVES 77
           +D  +  KIFVGG+     E E + YF+KFG +T+VV+++D+   RPRGFGFITF+  +S
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166

Query: 78  VDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGT 137
           VD  +  +FH++ G++VEVKRA P+     A   P A   G +            P    
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSR----------VVPNAAN 226

Query: 138 GYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYR 197
           G+   P  T    +G  G+ +      G + PP  G              G    PPP+ 
Sbjct: 227 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR-------------GAPPPPPPFT 268

Query: 198 NFLIS 203
           ++++S
Sbjct: 287 SYIVS 268

BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match: A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 7.2e-96
Identity = 186/244 (76.23%), Postives = 202/244 (82.79%), Query Frame = 0

Query: 9   MSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFG 68
           MST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPRGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 69  FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL--PNR 128
           F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN  HIPNAR    KSPL   NR
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120

Query: 129 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNF 188
           +VPFPYPYYG+GY IYPGFT FPH+G   VD YGSNFYGNWFPP   N+ASDG W  PNF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180

Query: 189 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVPFQI 248
           F VGM PP  RN L+ P   SKG+   G+ NGMA  RNGEIKQ T+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237

Query: 249 KDKT 250
           KD+T
Sbjct: 241 KDRT 237

BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match: A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 0

Query: 19  DQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESV 78
           DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 79  DSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGTG 138
           DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI        KSPL   +V   YPYY  G
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128

Query: 139 YTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYRN 198
           YT+YPGFTPFP + GPG  LYGS+ YGNWF PSFG MAS  AW +PNFF  GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188

Query: 199 FLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
            L+ P++SS GLS    G   A    ++   T  +++MSADAVPF  KDK
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228

BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match: A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.1e-79
Identity = 159/236 (67.37%), Postives = 179/236 (75.85%), Query Frame = 0

Query: 13  RMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITF 72
           RME   DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITF
Sbjct: 6   RME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITF 65

Query: 73  DSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPY 132
           DSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI        KSPL   +V   Y
Sbjct: 66  DSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSY 125

Query: 133 PYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMF 192
           PYY  GYT+YPGFTPFP + GPG  LYGS+ YGNWF PSFG MAS  AW  PNFF  GMF
Sbjct: 126 PYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF--GMF 185

Query: 193 PPPYRNFLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
           PPP++N L+ P++SS GLS    G   A    +++  T  +++MSADAVPF  KD+
Sbjct: 186 PPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDR 228

BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match: A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.8e-63
Identity = 143/251 (56.97%), Postives = 173/251 (68.92%), Query Frame = 0

Query: 7   MNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRG 66
           MN S+ RME+NNDQ RG+KIFVGGL ++LTE+EFK+YFEKFGQITDVVVM DSVTNRPRG
Sbjct: 1   MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRG 60

Query: 67  FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNR 126
           FGFITFDSVESV+ VLQNNFHELNGRRVEVKRA+PK  N N+ +        GKSPL + 
Sbjct: 61  FGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQR-----GKSPL-SP 120

Query: 127 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNW-FPPSFGN------MASDG 186
            VP  YP++ +G  +YPG+ PFPH+       YGS+ YG+W +   +G       +    
Sbjct: 121 HVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGS 180

Query: 187 AWCSPNFFGVGMFPPPYRNFLISPSFSSKG--LSDTGTGNGMAIRNGEIKQKTSGKRSMS 246
           AW +PN FG GMFP PY N +I P +SSKG  L D   GNG   RNG          +MS
Sbjct: 181 AWYAPNVFGDGMFPSPYINSVIHPVYSSKGGRLLDPMAGNGR--RNG----------NMS 226

Query: 247 ADAVPFQIKDK 249
           ADAVPFQ+ ++
Sbjct: 241 ADAVPFQLNNR 226

BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match: A0A5N6R9D7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 6.8e-46
Identity = 103/212 (48.58%), Postives = 131/212 (61.79%), Query Frame = 0

Query: 15  ENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDS 74
           +N ++Q R +KIFVGGLSA LTE+EFK YF++FG++TDVVVMHDS T+RPRGFGFITFDS
Sbjct: 108 DNGDNQFRTKKIFVGGLSASLTEEEFKNYFKRFGRVTDVVVMHDSTTHRPRGFGFITFDS 167

Query: 75  VESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPY 134
            ESV++V+QN+FHELNGR VEVKRA+PK+ N  +    N R  GG      R  P  +P 
Sbjct: 168 EESVENVMQNSFHELNGRLVEVKRAVPKEVNNGSDSGFNTRIEGG------RGSPGSFPP 227

Query: 135 YGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPS--------FGNMASDGAWCSPNF 194
           Y   Y I PG+ PFP F G G  LYG++ Y  W+P             +A    W  P  
Sbjct: 228 YSLRYWILPGYVPFPGFSGGGGSLYGASMYSGWYPSGGSGGVGSVVAPLAPRNPWYGPRV 287

Query: 195 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNG 219
            G G FP P  +  I P++ + G+   G   G
Sbjct: 288 IGAGAFPLPPGSASIYPAYFTGGVGGIGMSAG 313

BLAST of Clc05G28900 vs. TAIR 10
Match: AT1G58470.1 (RNA-binding protein 1 )

HSP 1 Score: 141.7 bits (356), Expect = 7.7e-34
Identity = 90/206 (43.69%), Postives = 121/206 (58.74%), Query Frame = 0

Query: 5   QRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRP 64
           Q+MN     M +N    R +KIFVGGLS+  TE+EFK+YFE+FG+ TDVVVMHD VTNRP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160

Query: 65  RGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNAGHIPNARTLGGK 124
           RGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G    N NA +IP + +    
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220

Query: 125 SP-LPNRD-----VPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 184
           +P +P ++     + FP P +G  + +     P           YG  F       S+ N
Sbjct: 221 TPYVPEQNGYGMVLQFPPPVFGYHHNVQAVQYP-----------YGYQFTAQVANVSWNN 280

Query: 185 --MASDGAWCSPNFFGVGMFPPPYRN 199
             M   G +C+P        PPP  N
Sbjct: 281 PIMQPTGFYCAPPH----PTPPPTNN 291

BLAST of Clc05G28900 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-29
Identity = 74/158 (46.84%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 17  NNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVE 76
           N    R +KIFVGGL + +TE EFK YF++FG I DVVVM+D  T RPRGFGFITFDS E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174

Query: 77  SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYG 136
           SVD VL   FHELNG+ VEVKRA+PK+ +               S  PNR    P   YG
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 234

Query: 137 TGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 175
             Y + P  +              +N Y N FPP + N
Sbjct: 235 NNYGVVPNRS-------------SANSYFNSFPPGYNN 241

BLAST of Clc05G28900 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.2 bits (313), Expect = 7.5e-29
Identity = 74/158 (46.84%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 17  NNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVE 76
           N    R +KIFVGGL + +TE EFK YF++FG I DVVVM+D  T RPRGFGFITFDS E
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171

Query: 77  SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYG 136
           SVD VL   FHELNG+ VEVKRA+PK+ +               S  PNR    P   YG
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 231

Query: 137 TGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 175
             Y + P  +              +N Y N FPP + N
Sbjct: 232 NNYGVVPNRS-------------SANSYFNSFPPGYNN 238

BLAST of Clc05G28900 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-28
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 0

Query: 8   NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
           N++T R    +   + +KIFVGGL   LT++EF+ YFE +G +TDV +M+D  TNRPRGF
Sbjct: 94  NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153

Query: 68  GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRD 127
           GF++FDS ++VDSVL   FH+L+G++VEVKRA+PK  N   G     R++GG        
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG----GRSMGGGG------ 213

Query: 128 VPFPYPYYGTGYTIYPGFTPFPHF-----GGPGVDLYGSNFYGNWFPPSFGNMASDGA 181
               Y  YG   + Y G      F      G G+  YGS+ YG      +GN  S+GA
Sbjct: 214 -SGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYG----AGYGN-GSNGA 255

BLAST of Clc05G28900 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-27
Identity = 86/206 (41.75%), Postives = 108/206 (52.43%), Query Frame = 0

Query: 8   NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
           N S   ++ +      +KIFVGGL++ +TE EFK YF +FG ITDVVVM+D  T RPRGF
Sbjct: 90  NKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149

Query: 68  GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNA-GHIPNARTLGGK--SPLP 127
           GFI++DS E+VD VLQ  FHELNG+ VEVK A+PK    N   +  N  + G    S L 
Sbjct: 150 GFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLL 209

Query: 128 NRDVPFPYPYYGTGYTIYP------------GFTPFPHFGGPGVDLYGSNF-------YG 187
           N       P   +GY + P            GF+PF H  G G++L   NF       YG
Sbjct: 210 NEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGH--GYGIEL---NFEPNQTQNYG 269

Query: 188 NWFPPSFGNMASDGAWCSPNFFGVGM 192
           +     FG   S G   S   FG  M
Sbjct: 270 SGSSGGFGRPFSPGYAASLGRFGSQM 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038898856.14.3e-11985.83RNA-binding protein 1-like [Benincasa hispida][more]
KAE8649895.17.9e-9776.11hypothetical protein Csa_012205 [Cucumis sativus][more]
XP_004141412.11.5e-9576.23RNA-binding protein 1 [Cucumis sativus][more]
KAG7037746.11.4e-8066.53RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022940975.12.6e-7968.26RNA-binding protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9C6521.1e-3243.69RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
Q8W0343.1e-2742.13Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q9VVE52.8e-2043.17RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
Q9JII58.1e-2032.43DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2[more]
Q96EP51.1e-1932.43DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L5637.2e-9676.23RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV... [more]
A0A6J1FS871.2e-7968.26RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV... [more]
A0A6J1J2K52.1e-7967.37RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1[more]
A0A6J1C7242.8e-6356.97RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S... [more]
A0A5N6R9D76.8e-4648.58Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G58470.17.7e-3443.69RNA-binding protein 1 [more]
AT4G26650.17.5e-2946.84RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.27.5e-2946.84RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G14300.12.2e-2842.13RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.12.4e-2741.75RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 25..97
e-value: 2.5E-25
score: 100.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 26..94
e-value: 1.4E-17
score: 63.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 24..101
score: 18.751446
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 21..110
e-value: 2.3E-27
score: 97.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..249
NoneNo IPR availablePANTHERPTHR48032:SF12NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 6..240
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 6..240
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 22..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G28900.2Clc05G28900.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding