Homology
BLAST of Clc05G28900 vs. NCBI nr
Match:
XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])
HSP 1 Score: 438.3 bits (1126), Expect = 4.3e-119
Identity = 212/247 (85.83%), Postives = 225/247 (91.09%), Query Frame = 0
Query: 7 MNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRG 66
M MST RMENNNDQCRGRKIFVGGLSAELTEDEFK YFEKFG+ITDVVVMHDSVTNRPRG
Sbjct: 1 MIMSTTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRG 60
Query: 67 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLP-- 126
FGFITF+SVESVDSVLQ+NFHELNGRRVEVKRAIPKKGNYN GHIPNART GGKSPLP
Sbjct: 61 FGFITFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNS 120
Query: 127 NRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSP 186
NR+VPFPYPYYG+ Y +YPGFTPFPH+GGPGVDLYGS+ YGNWFPPSFGNMAS+G W P
Sbjct: 121 NRNVPFPYPYYGSSYPVYPGFTPFPHYGGPGVDLYGSHLYGNWFPPSFGNMASEGTWYGP 180
Query: 187 NFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGM--AIRNGEIKQKTSGKRSMSADAVP 246
NFFGVG+FPPPYRN LI P +SSKGLSDTGTGNGM RNGEIKQ T+GKR MSADAVP
Sbjct: 181 NFFGVGIFPPPYRNSLIPPIYSSKGLSDTGTGNGMVDTRRNGEIKQNTTGKRIMSADAVP 240
Query: 247 FQIKDKT 250
FQIKD+T
Sbjct: 241 FQIKDRT 247
BLAST of Clc05G28900 vs. NCBI nr
Match:
KAE8649895.1 (hypothetical protein Csa_012205 [Cucumis sativus])
HSP 1 Score: 364.4 bits (934), Expect = 7.9e-97
Identity = 188/247 (76.11%), Postives = 205/247 (83.00%), Query Frame = 0
Query: 6 RMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPR 65
R+NMST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPR
Sbjct: 50 RLNMSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPR 109
Query: 66 GFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL-- 125
GFGF+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL
Sbjct: 110 GFGFVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLN 169
Query: 126 PNRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCS 185
NR+VPFPYPYYG+GY IYPGFT FPH+G VD YGSNFYGNWFPP N+ASDG W
Sbjct: 170 GNRNVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHG 229
Query: 186 PNFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVP 245
PNFF VGM PP RN L+ P SKG+ G+ NGMA RNGEIKQ T+GKR MSADA P
Sbjct: 230 PNFFSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAP 289
Query: 246 FQIKDKT 250
FQIKD+T
Sbjct: 290 FQIKDRT 289
BLAST of Clc05G28900 vs. NCBI nr
Match:
XP_004141412.1 (RNA-binding protein 1 [Cucumis sativus])
HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95
Identity = 186/244 (76.23%), Postives = 202/244 (82.79%), Query Frame = 0
Query: 9 MSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFG 68
MST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPRGFG
Sbjct: 1 MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60
Query: 69 FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL--PNR 128
F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL NR
Sbjct: 61 FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120
Query: 129 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNF 188
+VPFPYPYYG+GY IYPGFT FPH+G VD YGSNFYGNWFPP N+ASDG W PNF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180
Query: 189 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVPFQI 248
F VGM PP RN L+ P SKG+ G+ NGMA RNGEIKQ T+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237
Query: 249 KDKT 250
KD+T
Sbjct: 241 KDRT 237
BLAST of Clc05G28900 vs. NCBI nr
Match:
KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 310.5 bits (794), Expect = 1.4e-80
Identity = 165/248 (66.53%), Postives = 188/248 (75.81%), Query Frame = 0
Query: 1 MATEQRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSV 60
+A EQRM+ T RME DQ RGRKIFVGGLSAELTED+FK+YFEKFG++TDVVVM DSV
Sbjct: 14 LAREQRMSNGT-RME---DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSV 73
Query: 61 TNRPRGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGK 120
T RPRGFGFITFDSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI K
Sbjct: 74 TKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SK 133
Query: 121 SPLPNRDVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGA 180
SPL +V YPYY GYT+YPGFTPFP + GPG LYGS+ YGNWF PSFG MAS A
Sbjct: 134 SPLSESNVLPSYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAA 193
Query: 181 WCSPNFFGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADA 240
W +PNFF GMFPPP+++ L+ P++SS GLS G A ++ T +++MSADA
Sbjct: 194 WYAPNFF--GMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADA 247
Query: 241 VPFQIKDK 249
VPF KDK
Sbjct: 254 VPFHAKDK 247
BLAST of Clc05G28900 vs. NCBI nr
Match:
XP_022940975.1 (RNA-binding protein 1-like [Cucurbita moschata])
HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 0
Query: 19 DQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESV 78
DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9 DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68
Query: 79 DSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGTG 138
DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL +V YPYY G
Sbjct: 69 DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128
Query: 139 YTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYRN 198
YT+YPGFTPFP + GPG LYGS+ YGNWF PSFG MAS AW +PNFF GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188
Query: 199 FLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
L+ P++SS GLS G A ++ T +++MSADAVPF KDK
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228
BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match:
Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 1.1e-32
Identity = 90/206 (43.69%), Postives = 121/206 (58.74%), Query Frame = 0
Query: 5 QRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRP 64
Q+MN M +N R +KIFVGGLS+ TE+EFK+YFE+FG+ TDVVVMHD VTNRP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160
Query: 65 RGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNAGHIPNARTLGGK 124
RGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G N NA +IP + +
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220
Query: 125 SP-LPNRD-----VPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 184
+P +P ++ + FP P +G + + P YG F S+ N
Sbjct: 221 TPYVPEQNGYGMVLQFPPPVFGYHHNVQAVQYP-----------YGYQFTAQVANVSWNN 280
Query: 185 --MASDGAWCSPNFFGVGMFPPPYRN 199
M G +C+P PPP N
Sbjct: 281 PIMQPTGFYCAPPH----PTPPPTNN 291
BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match:
Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 0
Query: 8 NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
N++T R + + +KIFVGGL LT++EF+ YFE +G +TDV +M+D TNRPRGF
Sbjct: 94 NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153
Query: 68 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRD 127
GF++FDS ++VDSVL FH+L+G++VEVKRA+PK N G R++GG
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG----GRSMGGGG------ 213
Query: 128 VPFPYPYYGTGYTIYPGFTPFPHF-----GGPGVDLYGSNFYGNWFPPSFGNMASDGA 181
Y YG + Y G F G G+ YGS+ YG +GN S+GA
Sbjct: 214 -SGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYG----AGYGN-GSNGA 255
BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match:
Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)
HSP 1 Score: 100.5 bits (249), Expect = 2.8e-20
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0
Query: 22 RGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESVDSV 81
R +KIFVGGLSA T ++ K+YFE+FG I D ++M D TNR RGFGF+TF S + VD V
Sbjct: 116 RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175
Query: 82 LQNNFHELNGRRVEVKRAIPKK--------GNYNAGHIPNARTLGGKSPLPNRDVPFPYP 141
+ +FHE+N + VE K+A PK+ AG + G LP Y
Sbjct: 176 CEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYA 235
Query: 142 YY--GTGYTIYPGF-TPFP 150
Y G GY+ YP F P+P
Sbjct: 236 AYAAGRGYSGYPSFGLPYP 254
BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match:
Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)
HSP 1 Score: 99.0 bits (245), Expect = 8.1e-20
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 18 NDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVES 77
+D + KIFVGG+ E E + YF+KFG +T+VV+++D+ RPRGFGFITF+ +S
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 78 VDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGT 137
VD + +FH++ G++VEVKRA P+ A P A G + P
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVA----------PSAAN 226
Query: 138 GYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYR 197
G+ P T +G G+ + G + PP G G PPP+
Sbjct: 227 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR-------------GAPPPPPPFT 268
Query: 198 NFLIS 203
++++S
Sbjct: 287 SYIVS 268
BLAST of Clc05G28900 vs. ExPASy Swiss-Prot
Match:
Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 0
Query: 18 NDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVES 77
+D + KIFVGG+ E E + YF+KFG +T+VV+++D+ RPRGFGFITF+ +S
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 78 VDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGT 137
VD + +FH++ G++VEVKRA P+ A P A G + P
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSR----------VVPNAAN 226
Query: 138 GYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYR 197
G+ P T +G G+ + G + PP G G PPP+
Sbjct: 227 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR-------------GAPPPPPPFT 268
Query: 198 NFLIS 203
++++S
Sbjct: 287 SYIVS 268
BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match:
A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)
HSP 1 Score: 360.1 bits (923), Expect = 7.2e-96
Identity = 186/244 (76.23%), Postives = 202/244 (82.79%), Query Frame = 0
Query: 9 MSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFG 68
MST RM+NNNDQCRGRKIFVGGLSAELTE+EF++YFE FGQITDVVVMHDSVTNRPRGFG
Sbjct: 1 MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60
Query: 69 FITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPL--PNR 128
F+TF+S+ESVDSVLQ NFHELNGRRVEVKRAIPKKGNYN HIPNAR KSPL NR
Sbjct: 61 FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120
Query: 129 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNF 188
+VPFPYPYYG+GY IYPGFT FPH+G VD YGSNFYGNWFPP N+ASDG W PNF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGA-AVDSYGSNFYGNWFPPGSANIASDGWWHGPNF 180
Query: 189 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNGMA-IRNGEIKQKTSGKRSMSADAVPFQI 248
F VGM PP RN L+ P SKG+ G+ NGMA RNGEIKQ T+GKR MSADA PFQI
Sbjct: 181 FSVGMLPPLCRNSLMHP---SKGIY-IGSRNGMANTRNGEIKQNTAGKRIMSADAAPFQI 237
Query: 249 KDKT 250
KD+T
Sbjct: 241 KDRT 237
BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match:
A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)
HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 0
Query: 19 DQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVESV 78
DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITFDSV+SV
Sbjct: 9 DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68
Query: 79 DSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYGTG 138
DSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL +V YPYY G
Sbjct: 69 DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSYPYYSCG 128
Query: 139 YTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMFPPPYRN 198
YT+YPGFTPFP + GPG LYGS+ YGNWF PSFG MAS AW +PNFF GMFPPP++N
Sbjct: 129 YTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMFPPPHKN 188
Query: 199 FLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
L+ P++SS GLS G A ++ T +++MSADAVPF KDK
Sbjct: 189 SLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDK 228
BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match:
A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)
HSP 1 Score: 305.4 bits (781), Expect = 2.1e-79
Identity = 159/236 (67.37%), Postives = 179/236 (75.85%), Query Frame = 0
Query: 13 RMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITF 72
RME DQ RGRKIFVGGLSAELTED+FK YFEKFG++TDVVVM DSVT RPRGFGFITF
Sbjct: 6 RME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITF 65
Query: 73 DSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPY 132
DSV+SVDSVLQNNFHELNGRRVEVKRAIPKKGNYN GHI KSPL +V Y
Sbjct: 66 DSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPLSESNVLPSY 125
Query: 133 PYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGNMASDGAWCSPNFFGVGMF 192
PYY GYT+YPGFTPFP + GPG LYGS+ YGNWF PSFG MAS AW PNFF GMF
Sbjct: 126 PYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF--GMF 185
Query: 193 PPPYRNFLISPSFSSKGLSDTGTGNGMAIRNGEIKQKTSGKRSMSADAVPFQIKDK 249
PPP++N L+ P++SS GLS G A +++ T +++MSADAVPF KD+
Sbjct: 186 PPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDR 228
BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match:
A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)
HSP 1 Score: 251.9 bits (642), Expect = 2.8e-63
Identity = 143/251 (56.97%), Postives = 173/251 (68.92%), Query Frame = 0
Query: 7 MNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRG 66
MN S+ RME+NNDQ RG+KIFVGGL ++LTE+EFK+YFEKFGQITDVVVM DSVTNRPRG
Sbjct: 1 MNKSSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRG 60
Query: 67 FGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNR 126
FGFITFDSVESV+ VLQNNFHELNGRRVEVKRA+PK N N+ + GKSPL +
Sbjct: 61 FGFITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQR-----GKSPL-SP 120
Query: 127 DVPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNW-FPPSFGN------MASDG 186
VP YP++ +G +YPG+ PFPH+ YGS+ YG+W + +G +
Sbjct: 121 HVPLYYPHFSSGPVVYPGYAPFPHY-------YGSSLYGSWHYNGLYGTGHEAPPLPLGS 180
Query: 187 AWCSPNFFGVGMFPPPYRNFLISPSFSSKG--LSDTGTGNGMAIRNGEIKQKTSGKRSMS 246
AW +PN FG GMFP PY N +I P +SSKG L D GNG RNG +MS
Sbjct: 181 AWYAPNVFGDGMFPSPYINSVIHPVYSSKGGRLLDPMAGNGR--RNG----------NMS 226
Query: 247 ADAVPFQIKDK 249
ADAVPFQ+ ++
Sbjct: 241 ADAVPFQLNNR 226
BLAST of Clc05G28900 vs. ExPASy TrEMBL
Match:
A0A5N6R9D7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1)
HSP 1 Score: 194.1 bits (492), Expect = 6.8e-46
Identity = 103/212 (48.58%), Postives = 131/212 (61.79%), Query Frame = 0
Query: 15 ENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDS 74
+N ++Q R +KIFVGGLSA LTE+EFK YF++FG++TDVVVMHDS T+RPRGFGFITFDS
Sbjct: 108 DNGDNQFRTKKIFVGGLSASLTEEEFKNYFKRFGRVTDVVVMHDSTTHRPRGFGFITFDS 167
Query: 75 VESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPY 134
ESV++V+QN+FHELNGR VEVKRA+PK+ N + N R GG R P +P
Sbjct: 168 EESVENVMQNSFHELNGRLVEVKRAVPKEVNNGSDSGFNTRIEGG------RGSPGSFPP 227
Query: 135 YGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPS--------FGNMASDGAWCSPNF 194
Y Y I PG+ PFP F G G LYG++ Y W+P +A W P
Sbjct: 228 YSLRYWILPGYVPFPGFSGGGGSLYGASMYSGWYPSGGSGGVGSVVAPLAPRNPWYGPRV 287
Query: 195 FGVGMFPPPYRNFLISPSFSSKGLSDTGTGNG 219
G G FP P + I P++ + G+ G G
Sbjct: 288 IGAGAFPLPPGSASIYPAYFTGGVGGIGMSAG 313
BLAST of Clc05G28900 vs. TAIR 10
Match:
AT1G58470.1 (RNA-binding protein 1 )
HSP 1 Score: 141.7 bits (356), Expect = 7.7e-34
Identity = 90/206 (43.69%), Postives = 121/206 (58.74%), Query Frame = 0
Query: 5 QRMNMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRP 64
Q+MN M +N R +KIFVGGLS+ TE+EFK+YFE+FG+ TDVVVMHD VTNRP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160
Query: 65 RGFGFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKG----NYNAGHIPNARTLGGK 124
RGFGF+T+DS +SV+ V+Q+NFHEL+ +RVEVKRAIPK+G N NA +IP + +
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220
Query: 125 SP-LPNRD-----VPFPYPYYGTGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 184
+P +P ++ + FP P +G + + P YG F S+ N
Sbjct: 221 TPYVPEQNGYGMVLQFPPPVFGYHHNVQAVQYP-----------YGYQFTAQVANVSWNN 280
Query: 185 --MASDGAWCSPNFFGVGMFPPPYRN 199
M G +C+P PPP N
Sbjct: 281 PIMQPTGFYCAPPH----PTPPPTNN 291
BLAST of Clc05G28900 vs. TAIR 10
Match:
AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 125.2 bits (313), Expect = 7.5e-29
Identity = 74/158 (46.84%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 17 NNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVE 76
N R +KIFVGGL + +TE EFK YF++FG I DVVVM+D T RPRGFGFITFDS E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
Query: 77 SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYG 136
SVD VL FHELNG+ VEVKRA+PK+ + S PNR P YG
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 234
Query: 137 TGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 175
Y + P + +N Y N FPP + N
Sbjct: 235 NNYGVVPNRS-------------SANSYFNSFPPGYNN 241
BLAST of Clc05G28900 vs. TAIR 10
Match:
AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 125.2 bits (313), Expect = 7.5e-29
Identity = 74/158 (46.84%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 17 NNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGFGFITFDSVE 76
N R +KIFVGGL + +TE EFK YF++FG I DVVVM+D T RPRGFGFITFDS E
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171
Query: 77 SVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRDVPFPYPYYG 136
SVD VL FHELNG+ VEVKRA+PK+ + S PNR P YG
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPKELS---------------STTPNRS---PLIGYG 231
Query: 137 TGYTIYPGFTPFPHFGGPGVDLYGSNFYGNWFPPSFGN 175
Y + P + +N Y N FPP + N
Sbjct: 232 NNYGVVPNRS-------------SANSYFNSFPPGYNN 238
BLAST of Clc05G28900 vs. TAIR 10
Match:
AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 123.6 bits (309), Expect = 2.2e-28
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 0
Query: 8 NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
N++T R + + +KIFVGGL LT++EF+ YFE +G +TDV +M+D TNRPRGF
Sbjct: 94 NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 153
Query: 68 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNAGHIPNARTLGGKSPLPNRD 127
GF++FDS ++VDSVL FH+L+G++VEVKRA+PK N G R++GG
Sbjct: 154 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG----GRSMGGGG------ 213
Query: 128 VPFPYPYYGTGYTIYPGFTPFPHF-----GGPGVDLYGSNFYGNWFPPSFGNMASDGA 181
Y YG + Y G F G G+ YGS+ YG +GN S+GA
Sbjct: 214 -SGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYG----AGYGN-GSNGA 255
BLAST of Clc05G28900 vs. TAIR 10
Match:
AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 120.2 bits (300), Expect = 2.4e-27
Identity = 86/206 (41.75%), Postives = 108/206 (52.43%), Query Frame = 0
Query: 8 NMSTIRMENNNDQCRGRKIFVGGLSAELTEDEFKTYFEKFGQITDVVVMHDSVTNRPRGF 67
N S ++ + +KIFVGGL++ +TE EFK YF +FG ITDVVVM+D T RPRGF
Sbjct: 90 NKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGF 149
Query: 68 GFITFDSVESVDSVLQNNFHELNGRRVEVKRAIPKKGNYNA-GHIPNARTLGGK--SPLP 127
GFI++DS E+VD VLQ FHELNG+ VEVK A+PK N + N + G S L
Sbjct: 150 GFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLL 209
Query: 128 NRDVPFPYPYYGTGYTIYP------------GFTPFPHFGGPGVDLYGSNF-------YG 187
N P +GY + P GF+PF H G G++L NF YG
Sbjct: 210 NEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGH--GYGIEL---NFEPNQTQNYG 269
Query: 188 NWFPPSFGNMASDGAWCSPNFFGVGM 192
+ FG S G S FG M
Sbjct: 270 SGSSGGFGRPFSPGYAASLGRFGSQM 290
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9C652 | 1.1e-32 | 43.69 | RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1 | [more] |
Q8W034 | 3.1e-27 | 42.13 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... | [more] |
Q9VVE5 | 2.8e-20 | 43.17 | RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... | [more] |
Q9JII5 | 8.1e-20 | 32.43 | DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2 | [more] |
Q96EP5 | 1.1e-19 | 32.43 | DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L563 | 7.2e-96 | 76.23 | RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV... | [more] |
A0A6J1FS87 | 1.2e-79 | 68.26 | RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV... | [more] |
A0A6J1J2K5 | 2.1e-79 | 67.37 | RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1 | [more] |
A0A6J1C724 | 2.8e-63 | 56.97 | RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S... | [more] |
A0A5N6R9D7 | 6.8e-46 | 48.58 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1 | [more] |