Clc05G10310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G10310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	remorin
Location	ClcChr05: 8279830 .. 8282249 (+)
RNA-Seq Expression	Clc05G10310
Synteny	Clc05G10310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

tgaaagtttttgtttgagtaattagataacatatggtaatgccaagtgccaactcataataaggcaatatttgtccatcctcatccacctatgtttaattaccaactccaaatatttcccttcttattcttccaactataatatctcaaccacctctctctctctctcatttccatttttccctttcattttctctctcttaactcacaaatggccaccgatgagcccaacaaagtagagtctcaatctccgtcagagccccctccgccagctgcaacggagccggtggaggagcctaccaaagacgtggcggatgagaaatcaattatcccattacccccaccggaggaggagccggccgatgactccaaagctctggcaatcgttgaaagtaatttataaatataaagctctcaactttttcatttttttaatgcttttttgagctgtttggttggtggaaaaagagagagagaaaaaaaaaaaaggaatggaattttggaatttatcttcctctgtttttttttttttttttctttctctctctctctccagagttaattaatcattttgtgtggttagaaagaaaatagaaggagaaatttcttaattttcttattgggtttgtgtttaaattacatgtttgactctgtttttttttttttgttttggaatgataagagactgaagaaaaagcagaggagaaagagaaagacagtgaaggctcaattaatagaggtgattaaatggtgatatgaaatgattaatgtcaataatttgattaccaaaatgaatgaataattgcattaaattcttttttttttttttttttttttaatgttttatggttattagatgctgtacttgcaagagtggcaacagagaagagattgtcactcattaaagcttgggaagagagtgaaaaatcaaaggcagagaataggtacaaatcttgttttcattttcccatatagctgttttggaaaatttttgtcttcaaatttgatcacatttatagacaaaattacaatacaattttgtccatcaaaaactctaaaactactaaaatccaaaaaaaaaaaaaaagaaaaaaaaaactaactgaaaagtaatgccttttccaaatttccttttgttaaattacaaacttgttctcaatgtttgtatctcataggtgttgaagcttaaaaattatcaaataggctcttccgatgtcaattttatgccaaataagctaattaatttttaattttataagcaatattttgaaagattaatgaatctattatataaaaaaaattaaattttgtatctaatagatcattaaactttcaatttcgtttctaagtaaatttttaatattttagagacttttacaaaattgaaagtctagagacttacttgacatttttttaaatttagaaatctattttagaggtaatatcaaaagtctagatacctatttcataccaacttaatagtttaagggctaaaacttacaatttaactctttttaatagttaagttacaaatttggttcttatgatgtgtagaaagttaaaatagttcatatagtttgttagaatttagtcctaatagtttgataaatttagtccttaaagttaaaatcctcataaagagtcctatcgcaaggattattcacatagaagttatcaaactatataaactaaattctaattataaactataagaactcaataatttgccatgcaacccttttttatactattatttggtgcatgtgatttgaatggaacttgttgagcagagctcacaaaaagctatcagcaattggatcatgggagaacagcaagaaagcagctgtggaggctgaactgaaaaagattgaggtggcgttgtattcgtagatatgttatttacgattttggcgttatatataaatttactaaccaatgcctttgttaatctcatatttatctctctttatgaacataactaacacactgttagtgaactacgtaaatctctttgtcaattttctactatttacgttttgtggtttctttgatttcgatttcacattacaaatagagtcatttttcattatttgtattcaggaaaaattggagaagaagaaagcagagtatatagagaaatgaagaacaaaatagctttgattcacaaatcagcagaagaaaagaaggctgttattgaagcaaagcgtggagaagaaaagcttaaggcagaggaaatggcagccaaatacaaagctactggaactgttcctaagaagatccttggttgtttctaattaaaaactatgtgaatttgcttcttttatttcttggttaaggatgggtgttgctttctattcttgtttctttcatttatatatatatatctactttctttctttataattcatatatcatATCAAT

mRNA sequence

tgaaagtttttgtttgagtaattagataacatatggtaatgccaagtgccaactcataataaggcaatatttgtccatcctcatccacctatgtttaattaccaactccaaatatttcccttcttattcttccaactataatatctcaaccacctctctctctctctcatttccatttttccctttcattttctctctcttaactcacaaatggccaccgatgagcccaacaaagtagagtctcaatctccgtcagagccccctccgccagctgcaacggagccggtggaggagcctaccaaagacgtggcggatgagaaatcaattatcccattacccccaccggaggaggagccggccgatgactccaaagctctggcaatcgttgaaaagactgaagaaaaagcagaggagaaagagaaagacagtgaaggctcaattaatagagatgctgtacttgcaagagtggcaacagagaagagattgtcactcattaaagcttgggaagagagtgaaaaatcaaaggcagagaatagagctcacaaaaagctatcagcaattggatcatgggagaacagcaagaaagcagctgtggaggctgaactgaaaaagattgaggaaaaattggagaagaagaaagcagagtatatagagaaatgaagaacaaaatagctttgattcacaaatcagcagaagaaaagaaggctgttattgaagcaaagcgtggagaagaaaagcttaaggcagaggaaatggcagccaaatacaaagctactggaactgttcctaagaagatccttggttgtttctaattaaaaactatgtgaatttgcttcttttatttcttggttaaggatgggtgttgctttctattcttgtttctttcatttatatatatatatctactttctttctttataattcatatatcatATCAAT

Coding sequence (CDS)

atggccaccgatgagcccaacaaagtagagtctcaatctccgtcagagccccctccgccagctgcaacggagccggtggaggagcctaccaaagacgtggcggatgagaaatcaattatcccattacccccaccggaggaggagccggccgatgactccaaagctctggcaatcgttgaaaagactgaagaaaaagcagaggagaaagagaaagacagtgaaggctcaattaatagagatgctgtacttgcaagagtggcaacagagaagagattgtcactcattaaagcttgggaagagagtgaaaaatcaaaggcagagaatagagctcacaaaaagctatcagcaattggatcatgggagaacagcaagaaagcagctgtggaggctgaactgaaaaagattgaggaaaaattggagaagaagaaagcagagtatatagagaaatga

Protein sequence

MATDEPNKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK

Homology

[Close]

BLAST of Clc05G10310 vs. NCBI nr
Match: XP_038875881.1 (remorin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 222.2 bits (565), Expect = 2.9e-54
Identity = 131/149 (87.92%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVE 60
           MA DEPNKVESQSPSE PP  A + +EE TKDVA+EKSIIPL PPE +PADDSKALA +E
Sbjct: 1   MAADEPNKVESQSPSERPPLPAADSMEERTKDVAEEKSIIPLTPPEVKPADDSKALATIE 60

Query: 61  KTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSW 120
           KT EKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSW
Sbjct: 61  KTHEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSW 120

Query: 121 ENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           ENS KAAVEAELK+IEEKLEKKKAEYIEK
Sbjct: 121 ENSNKAAVEAELKQIEEKLEKKKAEYIEK 149

[Close]

BLAST of Clc05G10310 vs. NCBI nr
Match: XP_008439225.1 (PREDICTED: remorin [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-52
Identity = 129/150 (86.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 2   ATDEPNKVES-QSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEE-PADDSKALAIV 61
           ++DEP K+ES +SPSEPPPPAA EP ++   DVA+EKSIIPLPPPE+E PADDSKALAIV
Sbjct: 3   SSDEPKKIESEESPSEPPPPAAAEPTKD---DVAEEKSIIPLPPPEDEKPADDSKALAIV 62

Query: 62  EKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 121
           EK++EKAEEKEK+SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS
Sbjct: 63  EKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 122

Query: 122 WENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           WENSKKAAVEAELK+IEEKLEKKK EYIEK
Sbjct: 123 WENSKKAAVEAELKQIEEKLEKKKGEYIEK 149

[Close]

BLAST of Clc05G10310 vs. NCBI nr
Match: XP_038875876.1 (remorin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 6.0e-52
Identity = 130/154 (84.42%), Postives = 137/154 (88.96%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVE 60
           MA DEPNKVESQSPSE PP  A + +EE TKDVA+EKSIIPL PPE +PADDSKALA +E
Sbjct: 1   MAADEPNKVESQSPSERPPLPAADSMEERTKDVAEEKSIIPLTPPEVKPADDSKALATIE 60

Query: 61  -----KTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS 120
                +T EKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS
Sbjct: 61  SFGMIETHEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS 120

Query: 121 AIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           AIGSWENS KAAVEAELK+IEEKLEKKKAEYIEK
Sbjct: 121 AIGSWENSNKAAVEAELKQIEEKLEKKKAEYIEK 154

[Close]

BLAST of Clc05G10310 vs. NCBI nr
Match: KAA0033640.1 (remorin [Cucumis melo var. makuwa])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 128/150 (85.33%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 2   ATDEPNKVES-QSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEE-PADDSKALAIV 61
           ++DEP K+ES +SP EPPPPAA EP ++   DVA+EKSIIPLPPPE+E PADDSKALAIV
Sbjct: 3   SSDEPKKIESEESPLEPPPPAAAEPTKD---DVAEEKSIIPLPPPEDEKPADDSKALAIV 62

Query: 62  EKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 121
           EK++EKAEEKEK+SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS
Sbjct: 63  EKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 122

Query: 122 WENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           WENSKKAAVEAELK+IEEKLEKKK EYIEK
Sbjct: 123 WENSKKAAVEAELKQIEEKLEKKKGEYIEK 149

[Close]

BLAST of Clc05G10310 vs. NCBI nr
Match: XP_022141174.1 (remorin-like [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-48
Identity = 121/142 (85.21%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 10  ESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPE--EEPADDSKALAIVEKTEEKAE 69
           ES+S S+PPP  A EPVEEP+KDVA+EKSIIP  PPE  E PAD SKALA+VEKT EKAE
Sbjct: 6   ESESSSKPPPLPAAEPVEEPSKDVAEEKSIIPRTPPEEMENPADHSKALAVVEKTPEKAE 65

Query: 70  EKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKAA 129
           +KEKD+ GSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS IGSWENSKKAA
Sbjct: 66  QKEKDNGGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSEIGSWENSKKAA 125

Query: 130 VEAELKKIEEKLEKKKAEYIEK 150
           VEAELK+IEEKLEKKKAEYIEK
Sbjct: 126 VEAELKQIEEKLEKKKAEYIEK 147

[Close]

BLAST of Clc05G10310 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 103/154 (66.88%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEPTKDVADEKSII--PLPPP--EEEPADDSKAL 60
           MA  E  KVE   P+ P P     PVE P + VADEK+I+   LPPP  E+E  DDSKAL
Sbjct: 1   MAELEAKKVEIVDPAPPAP----GPVEAPKEVVADEKAIVAPALPPPAEEKEKPDDSKAL 60

Query: 61  AIVE-KTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS 120
            +VE K  E A+EK+   EGSI+RDAVLARVATEKR+SLIKAWEESEKSKAEN+A KK+S
Sbjct: 61  VVVETKAPEPADEKK---EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVS 120

Query: 121 AIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           AIG+WENSKKA +EAELKK+EE+LEKKKAEY EK
Sbjct: 121 AIGAWENSKKANLEAELKKMEEQLEKKKAEYTEK 147

[Close]

BLAST of Clc05G10310 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-30
Identity = 92/157 (58.60%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEP--TKDVADEKS------IIPLPPPEEEPADD 60
           MA +EP KV +++ SEP P     PVE+P    DVA ++       ++P P P EE  +D
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEV-PVEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQED 60

Query: 61  SKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHK 120
           SKA+  V   E + E+K    EGS+NRDAVLARV TEKR+SLIKAWEE+EK K EN+A K
Sbjct: 61  SKAIVPVVPKEVEEEKK----EGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEK 120

Query: 121 KLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           KLS+IGSWEN+KKAAVEAELKK+EE+LEKKKAEY+E+
Sbjct: 121 KLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 151

[Close]

BLAST of Clc05G10310 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-25
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATE-----PVEEP---TKDVADEKSIIPLPPPEEEPADD 60
           + ++ P KV + +P++ P PA  E     P   P   TKDVA+EK  I  PPP E+  DD
Sbjct: 9   LESESPAKVTTPAPADTPAPAPAEIPAPAPAPTPADVTKDVAEEK--IQNPPP-EQIFDD 68

Query: 61  SKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHK 120
           SKAL +VEK  E+     K +  S++RD  LA ++ EKRLS ++AWEESEKSKAEN+A K
Sbjct: 69  SKALTVVEKPVEE-PAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEK 128

Query: 121 KLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           K++ + +WENSKKAAVEA+LKKIEE+LEKKKAEY E+
Sbjct: 129 KIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

[Close]

BLAST of Clc05G10310 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-24
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 7   NKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVEKTEEKA 66
           +KV+ +SP+   P  A EP   P  +VADEK  I  PPP E     SKALA+VEK  E+ 
Sbjct: 8   SKVDVESPAVLAP--AKEPTPAPV-EVADEK--IHNPPPVE-----SKALAVVEKPIEEH 67

Query: 67  EEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKA 126
             K K S GS +RD +LA +  EK+ S IKAWEESEKSKAENRA KK+S + +WENSKKA
Sbjct: 68  TPK-KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKA 127

Query: 127 AVEAELKKIEEKLEKKKAEYIEK 150
           AVEA+L+KIEEKLEKKKA+Y EK
Sbjct: 128 AVEAQLRKIEEKLEKKKAQYGEK 139

[Close]

BLAST of Clc05G10310 vs. ExPASy TrEMBL
Match: A0A1S3AXW2 (remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 129/150 (86.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 2   ATDEPNKVES-QSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEE-PADDSKALAIV 61
           ++DEP K+ES +SPSEPPPPAA EP ++   DVA+EKSIIPLPPPE+E PADDSKALAIV
Sbjct: 3   SSDEPKKIESEESPSEPPPPAAAEPTKD---DVAEEKSIIPLPPPEDEKPADDSKALAIV 62

Query: 62  EKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 121
           EK++EKAEEKEK+SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS
Sbjct: 63  EKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 122

Query: 122 WENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           WENSKKAAVEAELK+IEEKLEKKK EYIEK
Sbjct: 123 WENSKKAAVEAELKQIEEKLEKKKGEYIEK 149

[Close]

BLAST of Clc05G10310 vs. ExPASy TrEMBL
Match: A0A5A7SRU5 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.5e-52
Identity = 128/150 (85.33%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 2   ATDEPNKVES-QSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEE-PADDSKALAIV 61
           ++DEP K+ES +SP EPPPPAA EP ++   DVA+EKSIIPLPPPE+E PADDSKALAIV
Sbjct: 3   SSDEPKKIESEESPLEPPPPAAAEPTKD---DVAEEKSIIPLPPPEDEKPADDSKALAIV 62

Query: 62  EKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 121
           EK++EKAEEKEK+SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS
Sbjct: 63  EKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGS 122

Query: 122 WENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           WENSKKAAVEAELK+IEEKLEKKK EYIEK
Sbjct: 123 WENSKKAAVEAELKQIEEKLEKKKGEYIEK 149

[Close]

BLAST of Clc05G10310 vs. ExPASy TrEMBL
Match: A0A0A0L9S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 126/152 (82.89%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MATDEPNKVE-SQSPSEPPPPAATEPVEEPTK-DVADEKSIIPLPPPEEE-PADDSKALA 60
           MA+DEP ++E  +SPSE PPP     V EPTK DVA+EKSIIPL PPE+E PADDSKALA
Sbjct: 1   MASDEPKQIEPEESPSEAPPPPPPPAVAEPTKDDVAEEKSIIPLLPPEDEKPADDSKALA 60

Query: 61  IVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAI 120
           IVEK++EKAEEKEK+SEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAI
Sbjct: 61  IVEKSDEKAEEKEKESEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAI 120

Query: 121 GSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           GSWENSKKAAVEAELK+IEEK EKKK E+IEK
Sbjct: 121 GSWENSKKAAVEAELKQIEEKFEKKKGEHIEK 152

[Close]

BLAST of Clc05G10310 vs. ExPASy TrEMBL
Match: A0A6J1CHU8 (remorin-like OS=Momordica charantia OX=3673 GN=LOC111011630 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.3e-48
Identity = 121/142 (85.21%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 10  ESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPE--EEPADDSKALAIVEKTEEKAE 69
           ES+S S+PPP  A EPVEEP+KDVA+EKSIIP  PPE  E PAD SKALA+VEKT EKAE
Sbjct: 6   ESESSSKPPPLPAAEPVEEPSKDVAEEKSIIPRTPPEEMENPADHSKALAVVEKTPEKAE 65

Query: 70  EKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKAA 129
           +KEKD+ GSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLS IGSWENSKKAA
Sbjct: 66  QKEKDNGGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSEIGSWENSKKAA 125

Query: 130 VEAELKKIEEKLEKKKAEYIEK 150
           VEAELK+IEEKLEKKKAEYIEK
Sbjct: 126 VEAELKQIEEKLEKKKAEYIEK 147

[Close]

BLAST of Clc05G10310 vs. ExPASy TrEMBL
Match: A0A6J1HZY5 (remorin-like OS=Cucurbita maxima OX=3661 GN=LOC111467746 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 114/149 (76.51%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVE 60
           MA DEP K+ES+ PSEP PP A E VEEPTK+VA+EKSII L PPE+ PADDSK L I E
Sbjct: 1   MADDEPKKLESEPPSEPSPPQAAELVEEPTKNVAEEKSIIQLTPPEKTPADDSKPLLIFE 60

Query: 61  KTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSW 120
           KTE K EEK+     SINRDA LARVATEKRL+LIKAWEESEKS+ ENRAHKKLS IGSW
Sbjct: 61  KTEAKTEEKQ---SSSINRDAELARVATEKRLTLIKAWEESEKSRTENRAHKKLSEIGSW 120

Query: 121 ENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           E+SKKAAVEAELK+IEEK EKKKAEY+EK
Sbjct: 121 ESSKKAAVEAELKQIEEKFEKKKAEYVEK 146

[Close]

BLAST of Clc05G10310 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-31
Identity = 92/157 (58.60%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEP--TKDVADEKS------IIPLPPPEEEPADD 60
           MA +EP KV +++ SEP P     PVE+P    DVA ++       ++P P P EE  +D
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEV-PVEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQED 60

Query: 61  SKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHK 120
           SKA+  V   E + E+K    EGS+NRDAVLARV TEKR+SLIKAWEE+EK K EN+A K
Sbjct: 61  SKAIVPVVPKEVEEEKK----EGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEK 120

Query: 121 KLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           KLS+IGSWEN+KKAAVEAELKK+EE+LEKKKAEY+E+
Sbjct: 121 KLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 151

[Close]

BLAST of Clc05G10310 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-31
Identity = 93/157 (59.24%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATEPVEEP--TKDVADEKS------IIPLPPPEEEPADD 60
           MA +EP KV +++ SEP P     PVE+P    DVA ++       ++P P P EE  +D
Sbjct: 1   MAEEEPKKV-TETVSEPTPTPEV-PVEKPAAAADVAPQEKPVAPPPVLPSPAPAEEKQED 60

Query: 61  SKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHK 120
           SKA+  V     K EE++K  EGS+NRDAVLARV TEKR+SLIKAWEE+EK K EN+A K
Sbjct: 61  SKAIVPV---VPKVEEEKK--EGSVNRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEK 120

Query: 121 KLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           KLS+IGSWEN+KKAAVEAELKK+EE+LEKKKAEY+E+
Sbjct: 121 KLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 150

[Close]

BLAST of Clc05G10310 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 67/109 (61.47%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 41  PLPPPEEEPADDSKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEE 100
           P PP +EE +DDSKA+ +V   +E  E+K+    GS++RDAVL R+  +KR+SLIKAWEE
Sbjct: 19  PSPPSKEEKSDDSKAIVLVVAAKEPTEDKK---VGSVHRDAVLVRLEQDKRISLIKAWEE 78

Query: 101 SEKSKAENRAHKKLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           +EKSK EN+A KK+S++G+WENSKKA+VEAELKKIEE+L KKKA Y E+
Sbjct: 79  AEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQ 124

[Close]

BLAST of Clc05G10310 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein )

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-26
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 1   MATDEPNKVESQSPSEPPPPAATE-----PVEEP---TKDVADEKSIIPLPPPEEEPADD 60
           + ++ P KV + +P++ P PA  E     P   P   TKDVA+EK  I  PPP E+  DD
Sbjct: 9   LESESPAKVTTPAPADTPAPAPAEIPAPAPAPTPADVTKDVAEEK--IQNPPP-EQIFDD 68

Query: 61  SKALAIVEKTEEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHK 120
           SKAL +VEK  E+     K +  S++RD  LA ++ EKRLS ++AWEESEKSKAEN+A K
Sbjct: 69  SKALTVVEKPVEE-PAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEK 128

Query: 121 KLSAIGSWENSKKAAVEAELKKIEEKLEKKKAEYIEK 150
           K++ + +WENSKKAAVEA+LKKIEE+LEKKKAEY E+
Sbjct: 129 KIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

[Close]

BLAST of Clc05G10310 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein )

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-25
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 7   NKVESQSPSEPPPPAATEPVEEPTKDVADEKSIIPLPPPEEEPADDSKALAIVEKTEEKA 66
           +KV+ +SP+   P  A EP   P  +VADEK  I  PPP E     SKALA+VEK  E+ 
Sbjct: 8   SKVDVESPAVLAP--AKEPTPAPV-EVADEK--IHNPPPVE-----SKALAVVEKPIEEH 67

Query: 67  EEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSKKA 126
             K K S GS +RD +LA +  EK+ S IKAWEESEKSKAENRA KK+S + +WENSKKA
Sbjct: 68  TPK-KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKA 127

Query: 127 AVEAELKKIEEKLEKKKAEYIEK 150
           AVEA+L+KIEEKLEKKKA+Y EK
Sbjct: 128 AVEAQLRKIEEKLEKKKAQYGEK 139

The following BLAST results are available for this feature:

BLAST of Clc05G10310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875881.1	2.9e-54	87.92	remorin-like isoform X2 [Benincasa hispida]	[more]
XP_008439225.1	2.7e-52	86.00	PREDICTED: remorin [Cucumis melo]	[more]
XP_038875876.1	6.0e-52	84.42	remorin-like isoform X1 [Benincasa hispida]	[more]
KAA0033640.1	1.3e-51	85.33	remorin [Cucumis melo var. makuwa]	[more]
XP_022141174.1	6.9e-48	85.21	remorin-like [Momordica charantia]	[more]

BLAST of Clc05G10310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93788	3.5e-34	66.88	Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
Q9FFA5	4.0e-30	58.60	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
Q9M2D8	3.8e-25	53.50	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]
O80837	5.5e-24	59.44	Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1	[more]

BLAST of Clc05G10310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AXW2	1.3e-52	86.00	remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1	[more]
A0A5A7SRU5	6.5e-52	85.33	Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 S...	[more]
A0A0A0L9S3	4.0e-49	82.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182080 PE=3 SV=1	[more]
A0A6J1CHU8	3.3e-48	85.21	remorin-like OS=Momordica charantia OX=3673 GN=LOC111011630 PE=3 SV=1	[more]
A0A6J1HZY5	1.7e-44	76.51	remorin-like OS=Cucurbita maxima OX=3661 GN=LOC111467746 PE=3 SV=1	[more]

BLAST of Clc05G10310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23750.1	2.8e-31	58.60	Remorin family protein	[more]
AT5G23750.2	6.3e-31	59.24	Remorin family protein	[more]
AT3G48940.1	1.2e-26	61.47	Remorin family protein	[more]
AT3G61260.1	2.7e-26	53.50	Remorin family protein	[more]
AT2G45820.1	3.9e-25	59.44	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	COILS	Coil	Coil	coord: 125..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..77
None	No IPR available	PANTHER	PTHR31775:SF5	REMORIN 1.4	coord: 1..149
None	No IPR available	PANTHER	PTHR31775	OS02G0117200 PROTEIN	coord: 1..149
IPR005518	Remorin, N-terminal	PFAM	PF03766	Remorin_N	coord: 30..86 e-value: 5.4E-23 score: 80.8
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 90..149 e-value: 5.8E-16 score: 58.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G10310.1	Clc05G10310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress