Clc02G17660 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G17660
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	pathogenesis-related protein PR-4-like
Location	ClcChr02: 30237265 .. 30238002 (+)
RNA-Seq Expression	Clc02G17660
Synteny	Clc02G17660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAGCCTACAAACATATATAAGTGAGAAAGTTACTAGAGAGAATTAAGAAAGCAAAGAATGGAGAGAGGAAGTATTATGATGGTTTTGGTGTTGGCTTTGGGGATTTTGAGTTTGGCAAATGCTCAAAGTGCCACCAATGTGAGAGCTACTTATCATTTTTACAACCCACAAGATATTAATTGGGACTATCTTAGAGCAAGTGTTTTTTGTGCAACATGGGATGCTAACAAGCCTTTGGAGTGGCGCCGCCAGTATGGCTGGACCGCCTTTTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCTTGTGGACGTTGTTTGAGGGTAAGTAAATCTTCTTGTTCATAAATTTTTAACTGCATTTGTAAACATTTTTGTCCCTACAAAATCATCATGTTTTAATCTATCATAAAAAAGAAGAAAGTTCTTGAAGCTGAGAAATTTTTATGCGGTGTAATGTAGGTGACCAACACTGCGACAGGAGCTTCAGAAATAGTGAGAATTGTTGATCAATGCGCTAATGGAGGGTTAGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAATGGAAACTTCCAAGGCCATCTTATTGTCAATTATGAGTTTGTCAATTGCTAAGATTTCTTGTTTAATTAAATTTCATTCTTCCTAGAAGAAGAAAGAAAATCATGTTGTAACGAATAAAGTACGAATAATAAAAAAGTATGAAATAAAGGTTTGTTTAAA

mRNA sequence

AAAAAAAAGCCTACAAACATATATAAGTGAGAAAGTTACTAGAGAGAATTAAGAAAGCAAAGAATGGAGAGAGGAAGTATTATGATGGTTTTGGTGTTGGCTTTGGGGATTTTGAGTTTGGCAAATGCTCAAAGTGCCACCAATGTGAGAGCTACTTATCATTTTTACAACCCACAAGATATTAATTGGGACTATCTTAGAGCAAGTGTTTTTTGTGCAACATGGGATGCTAACAAGCCTTTGGAGTGGCGCCGCCAGTATGGCTGGACCGCCTTTTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACCAACACTGCGACAGGAGCTTCAGAAATAGTGAGAATTGTTGATCAATGCGCTAATGGAGGGTTAGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAATGGAAACTTCCAAGGCCATCTTATTGTCAATTATGAGTTTGTCAATTGCTAAGATTTCTTGTTTAATTAAATTTCATTCTTCCTAGAAGAAGAAAGAAAATCATGTTGTAACGAATAAAGTACGAATAATAAAAAAGTATGAAATAAAGGTTTGTTTAAA

Coding sequence (CDS)

ATGGAGAGAGGAAGTATTATGATGGTTTTGGTGTTGGCTTTGGGGATTTTGAGTTTGGCAAATGCTCAAAGTGCCACCAATGTGAGAGCTACTTATCATTTTTACAACCCACAAGATATTAATTGGGACTATCTTAGAGCAAGTGTTTTTTGTGCAACATGGGATGCTAACAAGCCTTTGGAGTGGCGCCGCCAGTATGGCTGGACCGCCTTTTGTGGCCCTGTTGGCCCTCGTGGTCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACCAACACTGCGACAGGAGCTTCAGAAATAGTGAGAATTGTTGATCAATGCGCTAATGGAGGGTTAGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAATGGAAACTTCCAAGGCCATCTTATTGTCAATTATGAGTTTGTCAATTGCTAA

Protein sequence

MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNGNGNFQGHLIVNYEFVNC

Homology

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BLAST of Clc02G17660 vs. NCBI nr
Match: XP_008456018.1 (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa] >TYK18424.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+GSIMM+LVLALG+LSLANAQSATNVRATYH YNPQDINWDYLRASVFCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNGNF+GHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

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BLAST of Clc02G17660 vs. NCBI nr
Match: XP_004139239.1 (pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical protein Csa_019369 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           M +GSIMM+LVLALG+LSLANAQSATNVRATYH YNPQDINWDYLRASVFCATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRG+ SCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNGN +GHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. NCBI nr
Match: XP_022999102.1 (pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo] >XP_023547311.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+GS +M+L LALGILSLANAQSA NVRATYH YNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNG F+GHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. NCBI nr
Match: XP_022946136.1 (pathogenesis-related protein PR-4-like [Cucurbita moschata])

HSP 1 Score: 278.5 bits (711), Expect = 3.2e-71
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+ SI+M+L LALG+LSLANAQSA NVRATYH YNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNG F+GHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. NCBI nr
Match: KAG6599312.1 (hypothetical protein SDJN03_09090, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 126/142 (88.73%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+ S +M+L LALG+LSLANAQSA NVRATYH YNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKVSFLMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNT TG+SEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGSSEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNG F+GHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

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BLAST of Clc02G17660 vs. ExPASy Swiss-Prot
Match: P32045 (Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-56
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MERGSIMMVLVLALG-ILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKP 60
           MER + + V    +  ++++A AQSATNVRATYH YNPQ+INWD   ASV+CATWDA+KP
Sbjct: 1   MERVNKLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKP 60

Query: 61  LEWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFR 120
           LEWRR+YGWTAFCGP GP GQASCGRCLRVTNT TG  E VRIVDQC NGGLDLDVNVF 
Sbjct: 61  LEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFN 120

Query: 121 RIDTNGNGNFQGHLIVNYEFVNC 143
           R+DTNG G  +G+L VNYEFVNC
Sbjct: 121 RLDTNGLGYQRGNLNVNYEFVNC 143

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BLAST of Clc02G17660 vs. ExPASy Swiss-Prot
Match: P29063 (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.8e-56
Identity = 98/137 (71.53%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 6   IMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQ 65
           + + L++   ++++A AQSATNVR+TYH YNPQ+INWD   AS FCATWDA+KPL WR++
Sbjct: 9   LCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQC+NGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFQGHLIVNYEFVNC 143
            G  QGHLIVNYEFVNC
Sbjct: 129 LGYQQGHLIVNYEFVNC 145

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BLAST of Clc02G17660 vs. ExPASy Swiss-Prot
Match: P29062 (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 97/137 (70.80%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 6   IMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQ 65
           + + L++   ++++A AQSATNVR+TYH YNPQ+INWD   AS FCATWDA+KPL WR++
Sbjct: 9   LCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQC+NGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFQGHLIVNYEFVNC 143
            G  QGHL VNYEFVNC
Sbjct: 129 VGYQQGHLTVNYEFVNC 145

[Close]

BLAST of Clc02G17660 vs. ExPASy Swiss-Prot
Match: P09761 (Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.7e-54
Identity = 91/119 (76.47%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 24  SATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQYGWTAFCGPVGPRGQASC 83
           SA NVRATYH YNPQ++ WD    S +C+TWDANKPL WR++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNGNGNFQGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQC+NGGLDLDVNVFR+IDT+GNGN QGHLIVNY+FV+C
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDC 197

[Close]

BLAST of Clc02G17660 vs. ExPASy Swiss-Prot
Match: P09762 (Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.8e-52
Identity = 88/119 (73.95%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 24  SATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQYGWTAFCGPVGPRGQASC 83
           SA NVRATYH YNPQ++ WD    S +C+TWDANKP  WR +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNGNGNFQGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQC+NGGLDLD+NVF++IDT+G GN QGHLIVNY+FVNC
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNC 196

[Close]

BLAST of Clc02G17660 vs. ExPASy TrEMBL
Match: A0A5D3D4G8 (Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001500 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+GSIMM+LVLALG+LSLANAQSATNVRATYH YNPQDINWDYLRASVFCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNGNF+GHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. ExPASy TrEMBL
Match: A0A1S3C3H6 (pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+GSIMM+LVLALG+LSLANAQSATNVRATYH YNPQDINWDYLRASVFCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNGNF+GHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. ExPASy TrEMBL
Match: A0A0A0LIC8 (Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           M +GSIMM+LVLALG+LSLANAQSATNVRATYH YNPQDINWDYLRASVFCATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRG+ SCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNGN +GHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. ExPASy TrEMBL
Match: A0A6J1K9X1 (pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC111493583 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+GS +M+L LALGILSLANAQSA NVRATYH YNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNG F+GHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. ExPASy TrEMBL
Match: A0A6J1G2U1 (pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC111450306 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MERGSIMMVLVLALGILSLANAQSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPL 60
           ME+ SI+M+L LALG+LSLANAQSA NVRATYH YNPQDINWDYLRASVFCATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRR 120
           EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNT TGASEIVRIVDQCANGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFQGHLIVNYEFVNC 143
           IDTNGNG F+GHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of Clc02G17660 vs. TAIR 10
Match: AT3G04720.1 (pathogenesis-related 4 )

HSP 1 Score: 191.0 bits (484), Expect = 6.4e-49
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 23  QSATNVRATYHFYNPQDINWDYLRASVFCATWDANKPLEWRRQYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYHFYNP   NWD    S +C+TWDA+KP  WR +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTATGASEIVRIVDQCANGGLDLDVNVFRRIDTNGNGNFQGHLIVNYEFVNC 142
           CG+CLRV NT T A+  VRIVDQC+NGGLDLDV +F +IDT+G G  QGHLIV+Y+FV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

The following BLAST results are available for this feature:

BLAST of Clc02G17660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456018.1	4.5e-73	92.25	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 p...	[more]
XP_004139239.1	5.0e-72	91.55	pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical pro...	[more]
XP_022999102.1	6.5e-72	90.85	pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathog...	[more]
XP_022946136.1	3.2e-71	90.14	pathogenesis-related protein PR-4-like [Cucurbita moschata]	[more]
KAG6599312.1	2.1e-70	88.73	hypothetical protein SDJN03_09090, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc02G17660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32045	2.3e-56	72.03	Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P29063	6.8e-56	71.53	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P29062	1.5e-55	70.80	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P09761	3.7e-54	76.47	Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1	[more]
P09762	7.8e-52	73.95	Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1	[more]

BLAST of Clc02G17660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4G8	2.2e-73	92.25	Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C3H6	2.2e-73	92.25	pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 P...	[more]
A0A0A0LIC8	2.4e-72	91.55	Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4...	[more]
A0A6J1K9X1	3.2e-72	90.85	pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114935...	[more]
A0A6J1G2U1	1.6e-71	90.14	pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Clc02G17660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04720.1	6.4e-49	69.17	pathogenesis-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 58..76 score: 78.95 coord: 96..114 score: 77.19 coord: 117..141 score: 69.07 coord: 77..95 score: 77.89
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 24..142 e-value: 5.9E-59 score: 197.2
IPR001153	Barwin domain	PROSITE	PS51174	BARWIN_3	coord: 23..142 score: 81.418312
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 23..142 e-value: 7.0E-56 score: 189.3
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 23..142
IPR044301	Pathogenesis-related protein-4	PANTHER	PTHR46351	WOUND-INDUCED PROTEIN WIN2	coord: 6..142
None	No IPR available	PANTHER	PTHR46351:SF6	PATHOGENESIS-RELATED PROTEIN PR-4A	coord: 6..142
IPR018226	Barwin, conserved site	PROSITE	PS00772	BARWIN_2	coord: 135..142
IPR018226	Barwin, conserved site	PROSITE	PS00771	BARWIN_1	coord: 83..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G17660.1	Clc02G17660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0006952	defense response
molecular_function	GO:0004540	ribonuclease activity