Clc02G13803 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G13803
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
LocationClcChr02: 26083819 .. 26086121 (+)
RNA-Seq ExpressionClc02G13803
SyntenyClc02G13803
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGGGGATTCAAGTCTTTCTATTCAACCTCTGTCAAGCTCAAGGTCACACATGGTCCCCTCTTTCCCTATTGGGTTTTCCCACTCAAAGGCGAGTCTTTATGCCATTTGATAGGGTTATGCCCACACTAATGACGTGTGTCATCTTAAATCGGCTAGGTTGGGCTATCCTTAGCAATGCGTGGCCGACTAATGTCAAGTGGTGTCTTCCCCACACACGATGCGCCAAAAGTTGGCACACTCGGATCTCGTTCGCGTTAGGCCTCACTATAGGTCCATGTTGGCCTTGACCTCCAACCCATTTCTCTCTAGTATAGTCTCGAGATGCTCTGAGTTGACATGAATAAGAGATCCTCGCACTTATCGAGCCTATTGCACTTTGATGCCTAAGTTAGTACAAAAAGTGACTAATTTAGCTAGGTGCAAAAGAAGTAATGTTAGATCTCTCCTTAGGAGATTACTTACTGTTCCCTTTCGGGTGGTCAAATGCAATTATTAACAAGTCTATCCTCTAACACACGTCTATGGGTTACATGGTGTCAGATGCTCGAGATTGTAGGGTGGCGGTCTCTGGATCAGACTTGGTTATTTTCCGATTGGTATATATTCACTAGCTCAATTGGTCAACCCAACTTTTAGGCACTGACATTTCTTTGTCGGGCTTTCCCTTAGGCAATTGGCAACCTTCAACGTATGCAAACTTCTACATAAATTTGTAATTTAACCTTTTTTTAACCCATTATCTATTACAATTTTTCGTTTTTAAAATTACTGTTTGATAACAATTTTAGTTTTTGGTCAATTGATAACAAATTTTGAGTAGGAAAAGGTTCGATGAAGCAGAGTTTAATAAGTAAATAAATAAAATAAAAGAGAGCAAAGATCAATCAAAACTCGAGTAGGAAAAGGTTTCTCATAGCCATTATAAAACGAGGAGAAGAAAGTGGAAAATTTTCATTGACAGTTCTTGGCTGGAGAATCCAAAATTCCAGAGTTAAATTAAATCTATAAAAGGGTAAATAGCTTCATTTGAGTTTGCTTTATATTCAGCCTCTTCTTCTTTGAAATCCTGTTTGTCCATTCACAATTTACTTCTTTTTTTTAACTTTTAATATTTATATTTCCTAATTTCTTTAATATATATATATATATATATATATATATAAAATTTTAAAATATGTTGGTTTAAATAGGATTTTCTTTTGTCAAATATTTCAAATTTATGGTCTATGATCACACTAGTACTTAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATCACTCCAACTTAGATAGTTCAATAGTTGCAATCGAGCAAGGAGGCGCTCCAACTAAAATGATTGTAACGAATGATGAAGAGATAAATTCTCCAATTTAGGTAATTTCTTTTTATAAAAAAATACTGGTAGGTTTTCAAAATGGTTGATAACTAGGGAAAGATACAATTATTTAGCAAATATTAAGAGCTGGAAAAAAATAATTAACAAACAAACAAAGAAAATTTGAAATAATTCATAGATAAAGGCTTAGAACAAATAATAATAACAAAACTGAAATAAAAATCCGGTTGATGAGGCGAAGGAATTGGCCATCCTAATCTCAAGTATTCTGTTGGGGCTTTATAATCTGAAGCTTAATTAAATTATTGTTTATTTCTCTATTTCATAATTAAAAATTTCATTTTTATTGTGTGTGTAGATTTGAAGCTTCAACAATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCGACTGAACATTCCAAAACTCACAAGAAAGACAAAGATTTTCAGGTTTTTTTTTTTTTTTTTTTTGCTTTCTTTTTTTTGGTTTCTGTTCATGTTCCCTTAATTATTTATTGTTTTCAAAATTAATAAAGAAAATAATATTATTATTGTTATTATATTTAGGAAAAGGCAAGTGAAGAAGTATATGTAGGGCATTTAGTTGTGAATTACCGATGTGAAAAATGTGGATGTTCTTTTGATCTTGAAACCTCTCTTCGTTCACATCATTGCAAAGTAATTAAGCTTCTTCTCTTTTTTTCTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTAATTCAAATTTTGTATTTTTAATTTTAATATTTATAAATATTTGGAGCAGAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGAAGTGGAGAAAAGTTTGGGGGAGAACAAGTCTTTCAGAAAAAGAAGTAGGAAGGGAATACCAACACGGGCACCTTTCTTTTAG

mRNA sequence

CTAGGGGATTCAAGTCTTTCTATTCAACCTCTGTCAAGCTCAAGGTCACACATGGTCCCCTCTTTCCCTATTGGGTTTTCCCACTCAAAGGCGAGTCTTTATGCCATTTGATAGGGTTATGCCCACACTAATGACATTTGAAGCTTCAACAATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCGACTGAACATTCCAAAACTCACAAGAAAGACAAAGATTTTCAGGAAAAGGCAAGTGAAGAAGTATATGTAGGGCATTTAGTTGTGAATTACCGATGTGAAAAATGTGGATGTTCTTTTGATCTTGAAACCTCTCTTCGTTCACATCATTGCAAAAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGAAGTGGAGAAAAGTTTGGGGGAGAACAAGTCTTTCAGAAAAAGAAGTAGGAAGGGAATACCAACACGGGCACCTTTCTTTTAG

Coding sequence (CDS)

ATGCCATTTGATAGGGTTATGCCCACACTAATGACATTTGAAGCTTCAACAATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCGACTGAACATTCCAAAACTCACAAGAAAGACAAAGATTTTCAGGAAAAGGCAAGTGAAGAAGTATATGTAGGGCATTTAGTTGTGAATTACCGATGTGAAAAATGTGGATGTTCTTTTGATCTTGAAACCTCTCTTCGTTCACATCATTGCAAAAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGAAGTGGAGAAAAGTTTGGGGGAGAACAAGTCTTTCAGAAAAAGAAGTAGGAAGGGAATACCAACACGGGCACCTTTCTTTTAG

Protein sequence

MPFDRVMPTLMTFEASTMDDKSVPYNLRLRRDHKASSPTEHSKTHKKDKDFQEKASEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPFF
Homology
BLAST of Clc02G13803 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 8.5e-39
Identity = 83/108 (76.85%), Postives = 98/108 (90.74%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKKDKDFQEKAS-EEVYVGHLVVNYRCEKCGCS 77
           MDDKS+PYNLRLR+DHK+SSPTEHSKTHK D+DFQEKAS +++YV HL+V+YRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 78  FDLETSLRSHHCKNKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRA 125
           FD+E+SL SHHCKNK+E+EA MEIE    LGENKSFRK+SRKG+P RA
Sbjct: 61  FDIESSLSSHHCKNKNEREA-MEIEGHGILGENKSFRKKSRKGVPRRA 107

BLAST of Clc02G13803 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 4.7e-29
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MDDKSVPYNLRLR+DHKAS+ TE SK  K+ +++FQEK  EEV     +  Y C+KCGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 78  FDLETSLRSHHCK--NKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPFF 128
           FDL+ SLRSHHCK  NKSEKEA ME EV++ LG++KS RKR+RKGIPTRAPFF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEA-MENEVDEGLGKDKSLRKRTRKGIPTRAPFF 107

BLAST of Clc02G13803 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MDDKSVPYNLRLR+DHKAS+ TE SK  K+ +++FQEK  EEV     +  Y C+KCGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 78  FDLETSLRSHHCK--NKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPF 127
           FDL+ SLRSHHCK  NKSEKEA ME EVE+ LG++KS RKR+RKGIPTRAPF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEA-MENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

BLAST of Clc02G13803 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MD+KSVPYNLRLR+DHKAS+ TE SK  K+ +++FQEK  EEV     +  Y C+KCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 78  FDLETSLRSHHCK--NKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPF 127
           FDL+ SLRSHHCK  NKSEKEA ME EVE+ LG++KS RKR+RKGIPTRAPF
Sbjct: 61  FDLQPSLRSHHCKNNNKSEKEA-MENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

BLAST of Clc02G13803 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MD+KSVPYNLRLR+DHKAS+ TE SK  K+ +++FQEK  EEV     +  Y C+KCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 78  FDLETSLRSHHCK--NKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPFF 128
           FDL+ SLRSHHCK  NKSE+EA  E EVE++LG++KS RKR+RKGIPTRAPFF
Sbjct: 61  FDLQPSLRSHHCKSNNKSEREA-TENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

BLAST of Clc02G13803 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 86/111 (77.48%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKKDKDFQEKAS-EEVYVGHLVVNYRCEKCGCS 77
           MDDKS+PYNLRLR+DHK+SSPTEHSKTHK D+DFQEKAS +++YV HL+V+YRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 78  FDLETSLRSHHCKNKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPFF 128
           FD+E+SL SHHCKNK+E+EA MEIE    LGENKSFRK+SRKG+P RAPFF
Sbjct: 61  FDIESSLSSHHCKNKNEREA-MEIEGHGILGENKSFRKKSRKGVPRRAPFF 110

BLAST of Clc02G13803 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 75/113 (66.37%), Postives = 91/113 (80.53%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MD+KSVPYNLRLR+DHKAS+ TE SK  K+ +++FQEK  EEV     +  Y C+KCGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEV-----LSLYGCDKCGCS 60

Query: 78  FDLETSLRSHHCK--NKSEKEAIMEIEVEKSLGENKSFRKRSRKGIPTRAPFF 128
           FDL+ SLRSHHCK  NKSE+EA  E EVE++LG++KS RKR+RKGIPTRAPFF
Sbjct: 61  FDLQPSLRSHHCKSNNKSEREA-TENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

BLAST of Clc02G13803 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.9e-21
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 18  MDDKSVPYNLRLRRDHKASSPTEHSKTHKK-DKDFQEKASEEVYVGHLVVNYRCEKCGCS 77
           MDDKS+PYNLRLR   KAS+PTE SK ++K ++DFQEK  EE+      +  RCEKCGC 
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEI-----GLEQRCEKCGCR 60

Query: 78  FDLETSLRSHH--CKNKSEKEAIMEIEVEKSLGEN----KSFRKRSRKGIPTRAPFF 128
           F +E SL SHH  CKNK  +E +    V + L +N    KSFRKRSRKGIPTRAP F
Sbjct: 61  FGIEISLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTRAPLF 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651931.18.5e-3976.85hypothetical protein Csa_006531, partial [Cucumis sativus][more]
XP_023511836.14.7e-2968.14uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo][more]
KAG6571418.11.4e-2868.75hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011182.14.0e-2867.86hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022928048.15.2e-2866.37uncharacterized protein LOC111434950 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ062.0e-4177.48C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P... [more]
A0A6J1EMR92.5e-2866.37uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1D7393.9e-2157.26uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..52
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 68..95
score: 10.366926

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G13803.1Clc02G13803.1mRNA